BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912951
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31050.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1365 0.0
> AT1G31050.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:11075627-11079240 REVERSE
LENGTH=1498
Length=1498
Score = 1365 bits (739), Expect = 0.0
Identities = 829/873 (95%), Gaps = 3/873 (0%)
Strand=Plus/Plus
Query 27 TAACGGTTGGGTCTATGACACAAATCAAGTTAGGTACGATCAAAGTAGTGACCAACGGCT 86
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TAACGGTTGGATCTATGACCCAAATCAAGTTAGGTACGATCAAAGTAGTGACCAACGGCT 594
Query 87 GTCAAAGTTAACGGATCTTGTAGGCAAGCACTGGTCAATTGCGCCACCGAATAATCCCGA 146
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 595 GTCAAAGTTGACGGATCTTGTAGGCAAGCACTGGTCAATTGCACCACCGAATAATCCCGA 654
Query 147 CATGAACCATAACCTTCATCATCACTTCGATCATGATCATTCTCAAACAAACGACGACGT 206
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
Sbjct 655 CATGAACCATAACCTTCATCATCACTTCGATCATGATCATTCTC--A-AAACGACGACAT 711
Query 207 TTCTATGTACAGACAAGCCTTGGAGGTGAAAAATGAGGAAGATCTTTGTTACAATAATGG 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 TTCTATGTACAGACAAGCCTTGGAGGTGAAAAATGAGGAAGATCTTTGTTACAATAATGG 771
Query 267 CTCAAGTGGCGGTGGTTCCTTGTTCCATGATCCTACAGAAAGTTCTAGAAATTTCCTTGA 326
||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 772 CTCAAGTGGTGGTGGTTCCTTGTTCCATGATCCTATAGAAAGTTCTAGAAGTTTCCTTGA 831
Query 327 TGTAAGGTTAAGTAGGCCATTAACGGATATTAATCCGTCGTTTAAGCCATGCTTTAAGGC 386
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 832 TATAAGGTTAAGTAGGCCATTAACGGATATTAATCCGTCATTTAAGCCATGCTTTAAGGC 891
Query 387 CTTAAACGTATCCGAGTTCAACAAGAAAGAACAGCAAACGGCATCACTGGCAGCAGGGAG 446
|||||||||||||||||| |||||||||||||| ||||||||||| |||||||||| |||
Sbjct 892 CTTAAACGTATCCGAGTTTAACAAGAAAGAACATCAAACGGCATCTCTGGCAGCAGTGAG 951
Query 447 ATTGGGAACAACAAACGCCGGGAAGAAGAAAAGATGTGAAGAAATTTCCGATGAGGTCTC 506
| |||||||||||||||| || || ||||| |||||||||||||||||||||||||| ||
Sbjct 952 ACTGGGAACAACAAACGCTGGAAAAAAGAAGAGATGTGAAGAAATTTCCGATGAGGTTTC 1011
Query 507 CAAGAAGGCCAAGTGCAGCGCCGGCTCTACACTTTCGCCGGAGAAGGAACTACCAAAAGC 566
||||||||||||||||| | ||||||||||||||||| |||||||||||||| |||||
Sbjct 1012 AAAGAAGGCCAAGTGCAGTGAGGGCTCTACACTTTCGCCAGAGAAGGAACTACCCAAAGC 1071
Query 567 CAAACTTCGAGACAAGATCACGACTCTACAGCAAATTGTGTCTCCCTTTGGAAAGACGGA 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1072 CAAACTTCGAGACAAGATCACGACTCTACAGCAAATTGTGTCTCCCTTTGGAAAGACTGA 1131
Query 627 TACTGCTTCTGTACTTCAAGAAGCCATCACTTACATAAATTTTTATCAAGAGCAAGTTAA 686
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TACTGCTTCTGTGCTTCAAGAGGCCATCACTTACATAAATTTTTATCAAGAGCAAGTTAA 1191
Query 687 GCTGCTAAGCACTCCTTATATGAAGAATTCATCAATTAAGGATCCATGGGGAGGATGGGA 746
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1192 GCTGCTAAGCACTCCTTATATGAAGAATTCATCAATGAAGGATCCATGGGGGGGATGGGA 1251
Query 747 TAGAGAAGATCACAACAAAATGGGACCGAAACATCTAGATCTAAGGAGTAGAGGGCTTTG 806
||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1252 CAGAGAAGATCACAACAAAAGGGGACCGAAGCATCTTGATCTAAGGAGTAGAGGGCTTTG 1311
Query 807 TTTGGTTCCTATTTCTTGCACCCCAATCGCATACCGCGATAACAGTGCAACTGACTATTG 866
||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1312 TTTGGTTCCTATTTCATATACCCCAATCGCATACCGCGATAACAGTGCAACTGACTACTG 1371
Query 867 GAGTCCCTCGTATAGAGGTTCTTTGTATCGTTA 899
|| |||| |||||||||||||||||||||||||
Sbjct 1372 GAATCCCACGTATAGAGGTTCTTTGTATCGTTA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5