BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg912952

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G31050.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bin...   472    1e-132


> AT1G31050.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding 
superfamily protein | chr1:11075627-11079240 REVERSE 
LENGTH=1498
Length=1498

 Score =  472 bits (255),  Expect = 1e-132
 Identities = 302/324 (93%), Gaps = 6/324 (2%)
 Strand=Plus/Plus

Query  1    ATGTTAAGGGAAGAATGTACTCCAAGTTCATCATGGTGGGAAGATGTTCAACATCATCAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  101  ATGTTAAGGGAAGAATGTACTCCAAGTTCATCATGGTGGGAAGATGTTCAACATCATCAT  160

Query  61   AATGATCATGCAAACTCGATTAATTCGACGTCTTTTTACCATAAGAATAGTAATAAAAAC  120
            |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| |||
Sbjct  161  AATGATCATGCAAACTCGATTAGTTCGACGTCTTTCTACCATAAGAGTAGTAATAATAAC  220

Query  121  TTAAACGCAAACGCTAGCTGTGAAGAAGACAATCTCTC-GATCTCTACCGTGA-GCGCTT  178
            | | |||| ||||||||||||||||||||||||||||| | |||||||||| | ||||||
Sbjct  221  TCACACGCCAACGCTAGCTGTGAAGAAGACAATCTCTCCG-TCTCTACCGT-ACGCGCTT  278

Query  179  CAAATCGTTTGGACCTAACAGCTGAATCCTCCAATCATCACTCTCTCTCGGCTCCAAATC  238
            | ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct  279  CGAATCGTTTGGACCTAACCGCTGAATCCTCCAATCATCACTCTCTCTCGGCTTCGAATC  338

Query  239  AGCCTGCCTCCTCTTCCGATGAGTTGCTCCGCGACCACGTGGTCTCTTCAT-ATAATCAT  297
            ||||||||||||| |||||||||||||| |||||||| || || ||||| | ||||||||
Sbjct  339  AGCCTGCCTCCTCCTCCGATGAGTTGCTTCGCGACCATGTAGTATCTTC-TCATAATCAT  397

Query  298  CTATGGAGTCTTGCCTTCTTGCCT  321
            ||||||||||||||||||||||||
Sbjct  398  CTATGGAGTCTTGCCTTCTTGCCT  421



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5