BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg912952 Length=336 Score E Sequences producing significant alignments: (Bits) Value AT1G31050.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 472 1e-132 > AT1G31050.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:11075627-11079240 REVERSE LENGTH=1498 Length=1498 Score = 472 bits (255), Expect = 1e-132 Identities = 302/324 (93%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 1 ATGTTAAGGGAAGAATGTACTCCAAGTTCATCATGGTGGGAAGATGTTCAACATCATCAT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 ATGTTAAGGGAAGAATGTACTCCAAGTTCATCATGGTGGGAAGATGTTCAACATCATCAT 160 Query 61 AATGATCATGCAAACTCGATTAATTCGACGTCTTTTTACCATAAGAATAGTAATAAAAAC 120 |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||| Sbjct 161 AATGATCATGCAAACTCGATTAGTTCGACGTCTTTCTACCATAAGAGTAGTAATAATAAC 220 Query 121 TTAAACGCAAACGCTAGCTGTGAAGAAGACAATCTCTC-GATCTCTACCGTGA-GCGCTT 178 | | |||| ||||||||||||||||||||||||||||| | |||||||||| | |||||| Sbjct 221 TCACACGCCAACGCTAGCTGTGAAGAAGACAATCTCTCCG-TCTCTACCGT-ACGCGCTT 278 Query 179 CAAATCGTTTGGACCTAACAGCTGAATCCTCCAATCATCACTCTCTCTCGGCTCCAAATC 238 | ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| Sbjct 279 CGAATCGTTTGGACCTAACCGCTGAATCCTCCAATCATCACTCTCTCTCGGCTTCGAATC 338 Query 239 AGCCTGCCTCCTCTTCCGATGAGTTGCTCCGCGACCACGTGGTCTCTTCAT-ATAATCAT 297 ||||||||||||| |||||||||||||| |||||||| || || ||||| | |||||||| Sbjct 339 AGCCTGCCTCCTCCTCCGATGAGTTGCTTCGCGACCATGTAGTATCTTC-TCATAATCAT 397 Query 298 CTATGGAGTCTTGCCTTCTTGCCT 321 |||||||||||||||||||||||| Sbjct 398 CTATGGAGTCTTGCCTTCTTGCCT 421 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15683537688 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5