BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912989
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2158 0.0
> AT1G31840.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:11424006-11426528 FORWARD LENGTH=2523
Length=2523
Score = 2158 bits (1168), Expect = 0.0
Identities = 1381/1484 (93%), Gaps = 14/1484 (1%)
Strand=Plus/Plus
Query 278 CTGAT-AGTTTTGATAAACTATGTAGAGGAGGAACTGTGCCTTTTGGTGTGAGTGCTCAT 336
||||| | |||||||||||||||||||||||||| || ||||| |||||||||||||||
Sbjct 602 CTGATCA-TTTTGATAAACTATGTAGAGGAGGAATTGAGCCTTCAGGTGTGAGTGCTCAT 660
Query 337 GGATTTGTGTTGGATGCTCTTTTCCGAAAAGGAGAGGTTACAAAGGCTTTAGATTTTCAC 396
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 661 GGATTTGTGTTGGATGCTCTTTTCTGCAAAGGAGAGGTTACAAAGGCTTTAGATTTTCAT 720
Query 397 CGGCTAGTGATGGAGAGAGGTTTTCGTGTTGATATAGTTTCTTGTAATAAGATTTTAAAG 456
|| |||||||||||||||||||||||||||| |||||||||||| |||||| |||| |||
Sbjct 721 CGACTAGTGATGGAGAGAGGTTTTCGTGTTGGTATAGTTTCTTGCAATAAGGTTTTGAAG 780
Query 457 GGTCTTTCGGTTGATCAGATAGAGGTAGCTTCTCGGATGTTAAGTTTGGTGTTGGATTGT 516
|||||||| ||||||||||| ||||||||||||||| ||||||||||||| |||||||||
Sbjct 781 GGTCTTTCAGTTGATCAGATTGAGGTAGCTTCTCGGTTGTTAAGTTTGGTTTTGGATTGT 840
Query 517 GGTCCGGCACCTAATGTGGTGAGTTTTTGTACGGTGATTAATGGGTTTTGCAAAAGAGGC 576
|||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 841 GGTCCGGCACCTAATGTGGTGACTTTTTGCACGTTGATTAATGGGTTTTGCAAAAGAGGT 900
Query 577 GAAATGGATAGAGCATTCGAGCTTTTTAAAGTTATGGAACAGAGAGGGATAGCGCCAGAC 636
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 901 GAAATGGATAGAGCATTCGATCTTTTTAAAGTTATGGAACAGAGAGGGATAGAGCCAGAC 960
Query 637 TTGATCGCTTACAGCACTCTGATTGATGGATACTTCAAAGCGGGGATGTTAGGAATGGGT 696
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 961 TTGATCGCTTACAGTACTCTGATTGATGGATACTTCAAAGCAGGGATGTTAGGAATGGGT 1020
Query 697 CATAAACTTTTCTCGCAGGCCTTACATAAAGGCGTGAAGTTGGACGTGGTTGTCTTCAGT 756
||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1021 CATAAGCTTTTCTCGCAGGCCTTACATAAAGGTGTGAAGTTGGACGTGGTTGTGTTCAGT 1080
Query 757 TCAACCATTGATGTATATGTAAAATTC-GGGTATTTAACAACAGCGTT-TGATGTGTACA 814
||||| |||||||||||||||||| || ||| ||||| ||||||| || || ||||||||
Sbjct 1081 TCAACGATTGATGTATATGTAAAA-TCTGGGGATTTAGCAACAGC-TTCTGTTGTGTACA 1138
Query 815 AGAGAATGTTGTGTCAAGGGATTTCCCCTAATGTGGTTACTTACACCATTCTCATAAAAG 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AGAGAATGTTGTGTCAAGGGATTTCCCCTAATGTGGTTACTTACACCATTCTCATAAAAG 1198
Query 875 GCTTGTGCCAGGATGGTAGGATTTACGAGGCTTTTGGGATATATTGTCAGATCTTGAAAC 934
|||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||
Sbjct 1199 GCTTGTGCCAGGATGGTAGGATTTACGAAGCTTTTGGTATGTATGGTCAGATCTTGAAAC 1258
Query 935 GTGGTCTGGAGCCATCCGTTGTCACTTATAGCAGTCTCATTGATGGTTTTTGCAAGTATG 994
||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1259 GTGGTATGGAGCCATCTATTGTAACTTATAGCAGTCTCATTGATGGTTTTTGCAAGTGTG 1318
Query 995 GGAACTTGAGATCCGGGTTTGCTTTGTATGAGGATATGATAAAGATGGGTTATCCACCTG 1054
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1319 GGAACTTGAGATCCGGGTTTGCTTTATATGAGGATATGATAAAGATGGGTTATCCACCTG 1378
Query 1055 ATGTTGTCATTTATGGTGTGCTTGTCGATGGCCTTTGTAAGCAAGGGCTCATGCTTCATG 1114
||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 1379 ATGTTGTCATTTATGGTGTGCTTGTTGATGGCCTTTCTAAGCAAGGGCTCATGCTCCATG 1438
Query 1115 CTTTGAGATTCTCTGTTAAGACT-CTAGGCCAGTCGATCCGGCCCAATGTTGTAGTTTTT 1173
|| |||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||
Sbjct 1439 CTATGAGATTCTCTGTTAAGA-TGCTAGGCCAGTCGATCCGGCTCAATGTTGTAGTTTTT 1497
Query 1174 AATTCCTTAATAGATGGCTGGTGTAGATTAAACCGTTGTGACGAGGCTTTGAAGGTGTTT 1233
|||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1498 AATTCCTTAATAGATGGCTGGTGTAGGTTAAATCGTTTTGACGAGGCTTTGAAGGTGTTT 1557
Query 1234 AGATTAATGGGGATATATGGTATAAAACCTGATGTAGCCACAATT-ACCACGCTTATGAG 1292
|||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 1558 AGATTAATGGGGATATATGGTATAAAACCTGATGTAGCCACA-TTCACCACGGTTATGAG 1616
Query 1293 GGTGACTGTCATGGAAGGTAGATTAAAAGAGGGATTATTTCTATTTTTCCGGATGTTCAA 1352
||||| | ||||||||||||||||| |||| | ||||||||| |||||||||||||||||
Sbjct 1617 GGTGAGTATCATGGAAGGTAGATTAGAAGAAGCATTATTTCTGTTTTTCCGGATGTTCAA 1676
Query 1353 AATGGGTTTGGAACCTGATGC-TGTAGCATTCTGTACCCTAATGGATGCATTCTGCAAGA 1411
||||||||||||||||||||| | |||||| |||||||||||| |||||||||||||||
Sbjct 1677 AATGGGTTTGGAACCTGATGCCT-TAGCATACTGTACCCTAATAGATGCATTCTGCAAGC 1735
Query 1412 ATATGAAGCCAACCATTGGGCTTCAGCTTTTTGATCTTATGCAGAGGAATAAAAT-TCCT 1470
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1736 ATATGAAGCCAACCATTGGGCTTCAGCTGTTTGATCTTATGCAGAGGAATAAAATCTC-T 1794
Query 1471 GCGGACATCGCAGTATGTAATGTTGTTATTAATTTGCTTTTCAAAGGACAAAGCGTGGAT 1530
|| || || || ||||||||||| || ||| |||||||||||||| | || || | ||
Sbjct 1795 GCAGATATTGCGGTATGTAATGTCGTCATTCATTTGCTTTTCAAATGTCACCGCATAGAG 1854
Query 1531 GAGGCTTCTAAGTTCTTCAATAATCTTCTTGAAGGAAAGATGGAGCCTGATATTGTGACA 1590
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1855 GATGCTTCTAAGTTCTTCAATAATCTTATTGAAGGAAAGATGGAGCCTGATATTGTGACA 1914
Query 1591 TATAACACAATGATATGCGGCTACTGCTCTTTGAGAAGGTTAGATGAAGCAGCGAGGATT 1650
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1915 TATAACACAATGATATGTGGCTACTGCTCTTTGAGAAGGTTAGATGAAGCAGAGAGGATT 1974
Query 1651 TTCGAGATGCTAAAATTTACACCTTTTGGACCCAACGCCGTTACTTTGACTATACTTATC 1710
|||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1975 TTCGAGCTGCTAAAAGTTACACCTTTTGGTCCCAATACCGTTACTTTGACTATACTTATC 2034
Query 1711 CACACACTCTGTAAAAATAGTGATATGGATGGTGCTCTAAGGAT 1754
|| |||||| ||||||| |||||||||||||||| |||||||
Sbjct 2035 CATGTACTCTGCAAAAATAATGATATGGATGGTGCTATAAGGAT 2078
Score = 501 bits (271), Expect = 1e-140
Identities = 301/316 (95%), Gaps = 0/316 (0%)
Strand=Plus/Plus
Query 1755 TATATCTCCAAGCATAATCAGCTATAGCATCATAATCGACGGTCTTTGCAAACGAGGAAG 1814
||| |||||||||||| | || |||||||||||||| |||||||||||||||||||||||
Sbjct 2208 TATTTCTCCAAGCATAGTAAGTTATAGCATCATAATTGACGGTCTTTGCAAACGAGGAAG 2267
Query 1815 AGTGGATGAAGCAACAAATATATTCCATCAAGCCATAGATGCAAAGATACTACCTGATGT 1874
||||||||||||||||||||| |||||||| ||||||||||||||| || | ||||||||
Sbjct 2268 AGTGGATGAAGCAACAAATATCTTCCATCAGGCCATAGATGCAAAGTTATTGCCTGATGT 2327
Query 1875 TGTTGCCTACGCAATTCTTATCCGTGGTTGTTGCAAGGTTGGAAGACTCGTTGAAGCTGC 1934
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2328 TGTTGCCTACGCAATTCTTATCCGTGGTTATTGCAAGGTTGGAAGACTCGTTGAAGCTGC 2387
Query 1935 ATTGTTGTATGAACATATGTTAAGAAACGGAGTCAAACCAGATGATTTGCTGCAACGAGC 1994
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2388 ATTGTTGTATGAACATATGTTAAGAAACGGAGTCAAACCAGATGATTTGCTTCAACGAGC 2447
Query 1995 CCTTTCAGAATATAATCCCCCAAAATGGTTGATGAGCAAAGGGGTCTGGGTACACGATAA 2054
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2448 CCTTTCAGAATATAATCCCCCAAAGTGGTTGATGAGCAAAGGGGTCTGGGTACACGATAA 2507
Query 2055 ACCAATACCTGATTAA 2070
||| || |||||||||
Sbjct 2508 ACCGATGCCTGATTAA 2523
Score = 405 bits (219), Expect = 9e-112
Identities = 267/288 (93%), Gaps = 11/288 (4%)
Strand=Plus/Plus
Query 1 ATGTTTCTTTTTTCTTCATCGTCTTTACAATTACGCAAGA--TT-TTCCCGCCGATTTTC 57
||||| |||||||||||||||||||| ||||||||| ||| || ||||||| |||||||
Sbjct 1 ATGTTACTTTTTTCTTCATCGTCTTTGCAATTACGCGAGATTTTCTTCCCGCGGATTTTC 60
Query 58 TCTGTGTTCGTGAAGCTGAA-TTGCCTGAACTCTCGTGGGTTTTCGTCTGATTCTGCTAA 116
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTGTTCGTGAAGCTGAACTT-TCTGAACTCTCGTGGGTTTTCGTCTGATTCTGCTAA 119
Query 117 AACCCTCGCCGCCGGTGTCTCTAAAGCAATCAAAGAAGGAAACTTTAACTTATTAGA--- 173
| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 120 AGCCCTCGCCGCCGGTATCTCTAAAGCAATCAAAGAAGGAAACTTTAACTTGTTAGATTC 179
Query 174 TTCTGTCTACGGCTCAAATTTGCAACGAAACGAGACGAATCTGGTCCTTCTTTCGCTTGA 233
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 180 TTCTGTCTACGGTTCAAATTTGCAACGAAACGAGACGAATTTGGTCCTTCTTTCGCTTGA 239
Query 234 ATCAGAACCCAATTCTGCGCT-A-GATACTTTCGATGGGCAGAGATCT 279
||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 240 ATCAGAACCCAATTCTGCGCTTAAG-TACTTTCGATGGGCAGAGATCT 286
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102609913980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5