BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912993
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2477 0.0
> AT1G31870.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing
factor (InterPro:IPR018609); Has 13303 Blast hits to
9618 proteins in 489 species: Archae - 8; Bacteria - 444;
Metazoa - 7153; Fungi - 2294; Plants - 942; Viruses - 128; Other
Eukaryotes - 2334 (source: NCBI BLink). | chr1:11436747-11440109
FORWARD LENGTH=2134
Length=2134
Score = 2477 bits (1341), Expect = 0.0
Identities = 1583/1694 (93%), Gaps = 39/1694 (2%)
Strand=Plus/Plus
Query 17 CAGGAAACAAATCTTTAAAAGATTACTTGAAGAAGTATGAAAGTAGTGATGTTGT--aga 74
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 165 CAGGAAACCAATCTTTAAAAGATTACTTGAAGAAGTATGAAAGTAGTGATGTTGTAGAGA 224
Query 75 a-aagaagaagaagaagaagcagaagaagCCATCTAAACCTGAACCAAAAGGTGTTTTAG 133
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 225 AGAAGAAGAAGAAGAAGAAGCAGAAGAAGCCATCTAAACCTGAACCAAGAGGTGTTTTAG 284
Query 134 TTGTCGACGAAGATCCAGTTTGGCAAAAGCCGGTTGATCCTGAAGAGGACGAAAACGAAA 193
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 285 TTGTCGACGAAGATCCAGTTTGGCAAAAGCAGGTTGATCCTGAAGAGGACGAAAACGAAG 344
Query 194 ATGATTCAGCAGAGGAAAGGCCTTTAGTTGACGAAGACATTGATGTTAAGAGAATGAGGA 253
|||||||||||||||||| ||| | ||||| ||||||||||| |||||| |||||||||
Sbjct 345 ATGATTCAGCAGAGGAAACACCTCTGGTTGATGAAGACATTGAAGTTAAGCGAATGAGGA 404
Query 254 GGTTGGAGGAAATTAAGGCAAGGCGTGCACATAATGCCATTGCTGAGGATGGGAGTGGGT 313
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 405 GGTTGGAGGAAATTAAGGCAAGGCGTGCTCATAATGCCATTGCTGAGGATGGAAGTGGGT 464
Query 314 GGGTGACGTTACCTCCAAACCGTGAGGACACACAATCTGATATTTCTCCTCCACGTAGAC 373
|||| |||||||||| ||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 465 GGGTAACGTTACCTCTAAACCGTGAAGACACACAATCTAATATTTCTCCTCCACGTAGAC 524
Query 374 AAAGAACTCGTAATGACTCGCCCTCTCCTGAGCCTGGGCCTAGACGTTCGGTTGCGGACA 433
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 525 AAAGGACTCGTAATGACTCGCCCTCTCCTGAGCCTGGGCCTAGACGGTCGGTTGCGGATA 584
Query 434 GAGTTGAAACAGATATGTCACCACCACGTCGGAGGAAACGTCACAATTCGCCTTCACCTG 493
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 585 GAGTTGATACAGATATGTCACCACCACGACGGAGAAAACGTCACAATTCGCCTTCACCTG 644
Query 494 AACCTAACAGAAAACATACAAAGCCTGTTAGTTTGGATTCTGATATGTCACCACCTCGCA 553
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 645 AACCTAACAGAAAACATACCAAGCCTGTTAGTTTGGATTCAGATATGTCACCACCTCGCA 704
Query 554 AAAGAAAAGCCAGGAATGACTCGCCTTCACCAGAGCCTGAAGCTAAAGTCCCCAAAAATC 613
||||||||||||||||||| |||||||||||||| |||||||||||| | |||
Sbjct 705 AAAGAAAAGCCAGGAATGATTCGCCTTCACCAGAACCTGAAGCTAAA-T--------ATC 755
Query 614 TGAGTGAAGATCTATCTCCTCCTCGTAGGAGACATGTTCATTCTCCATCGCGTGAATCTA 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TGAGTGAAGATCTATCTCCTCCTCGTAGGAGACATGTTCATTCTCCATCGCGTGAATCTA 815
Query 674 GCAGAAAGCGTTCAGATTCTGTTGAGTTAGACGATGATTTATCTCCGCCTCGCAGGAAAA 733
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 816 GCAGAAAGCGTTCAGATTCTGTTGAGTTGGACGATGATTTATCTCCGCCTCGCAGGAAAA 875
Query 734 GAGATTTACATGGTTCACCTGTCTCAGATGTAAAAAAGAAGAGTAATGATCTTTCTCCTC 793
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 876 GAGATTTACATGGTTCACCTGTCTCAGATGTAAAAAAGAAGAGCAATGATCTATCTCCTC 935
Query 794 CACGGAGAAGACGATATCATTCTCCATCACCCGAACCGGGTAGAAGGCCTTCAAAATTC- 852
||||||||||| ||||||||||||||||||| ||||| | ||||||| |||||||| ||
Sbjct 936 CACGGAGAAGAAGATATCATTCTCCATCACCTGAACCAGCTAGAAGGTCTTCAAAA-TCT 994
Query 853 ATTGCCTCAAATGCTGATTTATCTCCACCCCGCAGGAATATGAATATGAAGGGTTCTCGA 912
||| ||| ||||||||||||||||||||| || ||||||| |||||||||| ||||| |
Sbjct 995 TTTGGCTCGAATGCTGATTTATCTCCACCCGGCCGGAATATAAATATGAAGGATTCTCAA 1054
Query 913 GACTCAGATCTTTCTCCTCAAAG-AAA-----A-A-CTGCG--GATCCTC-G---ACGT- 957
|||||||||||||| |||||||| ||| | | |||| | || || | | ||
Sbjct 1055 GACTCAGATCTTTCGCCTCAAAGAAAAGCCGCAGATTTGCGACGTTCTTCTGAAAATGTG 1114
Query 958 T-C-----TTCCAATATTGATAGCTCTCCTCCAAGGAGACCACGCAGAGAATCACCAATT 1011
| | ||||||| ||||||||||||| |||||||||||||||||||| ||| || |
Sbjct 1115 TCCAGGAGTTCCAATTTTGATAGCTCTCCCCCAAGGAGACCACGCAGAGATTCATCACCT 1174
Query 1012 CCTCAAACAAGCAAGGAGCAACGAAAGACCGGTTTGATTAGTGGCAAAGACATTGGAAGT 1071
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1175 CCTCAAATAAGCAAGGAGCAACGAAAGACCGGATTGATTAGTGGCAAAGACATTGGAAGT 1234
Query 1072 GAATATCGAAAGAAAAAGGAGGATGAACAATTGAGGTTTAAAAATATGGATTCCGAGCTA 1131
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1235 GAATATCGAAAGAAAAAGGAGGATGAAAAATTGAGGTTTAAAAATATGGATTCCGAGCTA 1294
Query 1132 ACTGGTCAAAATGCAGAAGCAGTATTTCGTGACAAGATCACAGGGAAGCGTATATCAAAG 1191
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1295 ACTGGTCAAAACGCAGAAGCAGTGTTCCGTGACAAGATCACAGGGAAGCGTATATCAAAG 1354
Query 1192 GAGGAATATCTTAAATCGAAGCaaaaaaaaGTGATAGAGAAGCCAAAGGAGATAAAACTG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1355 GAGGAATATCTTAAATCGAAGCAAAAAAAAGTGATAGAGAAGCCAAAGGAGATAAAACTG 1414
Query 1252 GAATGGGGCAAAGGTTTAGCTCAGAAGCGTGAAGCTGAAGCTAGACTACAGGAACTCGAG 1311
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1415 GAATGGGGCAAAGGTTTAGCTCAGAAGCGTGAAGCTGAAGCTAGACTACAAGAACTTGAG 1474
Query 1312 CTTGAGAAGGAGAAGCCATTTGCTCGGACAAGGGATGATCCGGAACTTGATCAAATGTTG 1371
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1475 CTTGAGAAGGATAAGCCATTTGCTCGGACAAGGGATGATCCGGAGCTTGATCAAATGATG 1534
Query 1372 AAGGAAAGAGTTAGATTTGGAGATCCAATGGCTCATTTGGTTAAGAAAAAGAA-GCACGA 1430
||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | ||||
Sbjct 1535 AAGGAAAGAGTTAGATTTGGAGATCCAATGGCTCATTTGGTCAAGAAAA-GAAAGTACGA 1593
Query 1431 GACAACTCTTGTGGATCTAGGAGACGACGAGGAGATGAAAAAATCTGGGTTCATTATACC 1490
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1594 GACAACTCTTGTGGATCTAGGAGACGATGAGGAGATGAAAAAATCTGGGTTCATTATACC 1653
Query 1491 ACAAAGTGTGCCTAAACATAGTTGGTTGACGAGAGGGTTGGAAGCTGCAACAAACCGTTA 1550
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 1654 ACAAAGTGTGCCTAAACATAGTTGGTTGACGAGACGGTTGGAAGCTGCATCAAACCGGTA 1713
Query 1551 TGGGATTAAACCGGGTAGACACTGGGATGGGGTCGACCGTAGTAACGGAACTGAGAAGCA 1610
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1714 TGGGATTAAACCGGGTAGACACTGGGATGGGGTCGACCGTAGTAACGGAACTGAGAAGGA 1773
Query 1611 AT-TGATTAAGAAGACCAATGAGAGGAAAGCAACGGAAATAGAGGCTTATCTCTGGTCCG 1669
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 -TCTGATTAAGAAGACCAATGAGAGGAAAGCAACGGAAATAGAGGCTTATCTCTGGTCCG 1832
Query 1670 TTGCAGACATGTGA 1683
||||||||||||||
Sbjct 1833 TTGCAGACATGTGA 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83182303065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5