BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg912995
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31885.1 | Symbols: NIP3;1 | NOD26-like intrinsic protein 3;... 1186 0.0
AT2G21020.1 | Symbols: | pseudogene, major intrinsic protein (... 475 2e-133
> AT1G31885.1 | Symbols: NIP3;1 | NOD26-like intrinsic protein
3;1 | chr1:11450460-11451985 FORWARD LENGTH=972
Length=972
Score = 1186 bits (642), Expect = 0.0
Identities = 756/812 (93%), Gaps = 4/812 (0%)
Strand=Plus/Plus
Query 1 ATGATATTTGCCGGCTGCTCAGCCATCGTGGTAAATGAGACGTACGGCAAACCGGTGACA 60
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 163 ATGATATTTGCCGGTTGCTCAGCCATCGTGGTAAATGAGACGTATGGCAAACCGGTGACA 222
Query 61 CTTCCCGGTATAGCTTTGGTATGGGGACTAACCGTAACGGTTATGATCTACTCAATCGGT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 223 CTTCCCGGTATAGCTTTGGTATGGGGACTAGTCGTAACGGTTATGATCTACTCAATTGGT 282
Query 121 CATGTCTCCGGTGCACATTTCAACCCTGCTGTTTCCATTGCCTTTGCATCTTCTAAAAAG 180
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 283 CATGTCTCTGGTGCACATTTCAACCCTGCTGTTTCTATTGCCTTTGCCTCTTCTAAGAAG 342
Query 181 TTCCCTTTTAATCAGGTTCCAGGGTATATAGCCGCTCAAGTTCTCGGATCGACCTTAGCT 240
|||||||||||||||||||| ||||| || ||||||||| |||||||||||||||||||
Sbjct 343 TTCCCTTTTAATCAGGTTCCGGGGTACATTGCCGCTCAACTTCTCGGATCGACCTTAGCG 402
Query 241 GCTGCAGCTT-TACGGCTTTTGTTTCATCTGA-ATGATGATGTTTGTAGCCTCAAAGGCG 298
||||||| || |||||||| |||| ||||| | | || ||||||||||||||||||||||
Sbjct 403 GCTGCAG-TTCTACGGCTTGTGTTCCATCT-AGACGACGATGTTTGTAGCCTCAAAGGCG 460
Query 299 ATGTTTACGTTGGAACATATCCATCAAACTCAACCACGACGTCATTTGTAATGGAGTTCA 358
||||||| || ||||||||||| |||||||||| ||||| || || |||||||||||||
Sbjct 461 ATGTTTATGTGGGAACATATCCGTCAAACTCAAATACGACCTCGTTCGTAATGGAGTTCA 520
Query 359 TTGCTACTTTCAATCTAATGTTCGTTATATCTGCTGTCGCTACCGATAAACGAGCCACGG 418
| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct 521 TCGCTACTTTCAATCTAATGTTTGTTATATCTGCTGTCGCAACCGATAAACGGGCCACCG 580
Query 419 GGTCACTCGCTGGAATCGCTATTGGCGCAACCGTAGTACTCGACATCCTTTTCTCCGGGC 478
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 581 GGTCATTCGCTGGAATCGCTATTGGCGCAACCATAGTACTCGACATCCTTTTCTCCGGGC 640
Query 479 CAATATCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGGGAT 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CAATTTCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGGGAT 700
Query 539 GTTATAAGGACTTATGGTTATACATAATTTCACCGGTGCTCGGAGCATTATCAGGTGCAT 598
|||||||||| ||||||||||||||| ||||||| ||| |||| ||||||||||||||||
Sbjct 701 GTTATAAGGATTTATGGTTATACATAGTTTCACCCGTGATCGGGGCATTATCAGGTGCAT 760
Query 599 GGACTTACAATTTGTTACGATCCACAAAGAAATCATATAGTGAGATTATTCGTCCAAATT 658
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 761 GGACTTATGGTTTGTTACGATCGACAAAGAAATCATATAGTGAGATTATTCGTCCAAATT 820
Query 659 GCAATAAAATTTCTTCGAGAGATCGCCAAGAAGCTTCTAAAGATGAGATTTGTGTTTTAC 718
|||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 821 GCAATAAAGTATCTTCGAGAGATCGCCAAGAAGCTTCCCAAGATGAGATTTGTGTTCTAC 880
Query 719 GAGTGGTTGATCCAGCTAACCAAAACTATTTTATATGTTCATCACCTAATGATATCAATG 778
||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 881 GAGTGGTTGATCCGGCTAATCAAAACTATTTTATATGTTCATCACCTACTGATATCAATG 940
Query 779 GTAAATGTAATGTTACATGTAAGTTGGCGTGA 810
| ||||||||||||||||||||||||||||||
Sbjct 941 GCAAATGTAATGTTACATGTAAGTTGGCGTGA 972
> AT2G21020.1 | Symbols: | pseudogene, major intrinsic protein
(MIP) family, contains Pfam profile: MIP PF00230; blastp match
of 61% identity and 1.8e-40 P-value to PIR|S01444|S01444
nodulin-26 precursor - soybean | chr2:9022778-9024211 REVERSE
LENGTH=1434
Length=1434
Score = 475 bits (257), Expect = 2e-133
Identities = 310/335 (93%), Gaps = 6/335 (2%)
Strand=Plus/Plus
Query 476 GGCCAATATCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGG 535
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 GGCCAATTTCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGG 1006
Query 536 GATGTTATAAGGACTTATGGTTATACATAATTTCACCGGTGCTCGGAGCATTATCAGGTG 595
||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 1007 GATGTTATAAGGATTTATGGTTATACATAGTTTCACC----C--GGAGCATTATCAGGTG 1060
Query 596 CATGGACTTACAATTTGTTACGATCCACAAAGAAATCATATAGTGAGATTATTCGTCCAA 655
|||||||||| |||||||||||| |||| ||||||||||||||||||||| |||||||
Sbjct 1061 CATGGACTTATGGTTTGTTACGATCGACAACGAAATCATATAGTGAGATTATACGTCCAA 1120
Query 656 ATTGCAATAAAATTTCTTCGAGAGATCGCCAAGAAGCTTCTAAAGATGAGATTTGTGTTT 715
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1121 TTTGCAATAAAGTATCTTCGAGAGATCGCCAAGAAGCTTCCCAAGATGAGATTTGTGTTT 1180
Query 716 TACGAGTGGTTGATCCAGCTAACCAAAACTATTTTATATGTTCATCACCTAATGATATCA 775
|||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1181 TACGAGTGGTTGATCCGGCTAATCAAAACTATTTTATATGTTCATCACCTACCGATATCA 1240
Query 776 ATGGTAAATGTAATGTTACATGTAAGTTGGCGTGA 810
|||| ||||||||||||||||||||||||||||||
Sbjct 1241 ATGGCAAATGTAATGTTACATGTAAGTTGGCGTGA 1275
Score = 326 bits (176), Expect = 3e-88
Identities = 190/197 (96%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1 ATGATATTTGCCGGCTGCTCAGCCATCGTGGTAAATGAGACGTACGGCAAACCGGTGACA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 567 ATGATATTTGCCGGCTGCTCAGCCATCGTGGTAAATGAGACGTACGGTAAACCGGTGACA 626
Query 61 CTTCCCGGTATAGCTTTGGTATGGGGACTAACCGTAACGGTTATGATCTACTCAATCGGT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 627 CTTCCCGGTATAGCTTTGGTATGGGGACTAGTCGTAACGGTTATGATCTACTCAATTGGT 686
Query 121 CATGTCTCCGGTGCACATTTCAACCCTGCTGTTTCCATTGCCTTTGCATCTTCTAAAAAG 180
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 687 CATGTCTCCGGTGCACATTTCAACCCTGCTGTTTCTATTGCCTTTGCCTCTTCTAAGAAG 746
Query 181 TTCCCTTTTAATCAGGT 197
|||||||||||||||||
Sbjct 747 TTCCCTTTTAATCAGGT 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5