BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg912995 Length=810 Score E Sequences producing significant alignments: (Bits) Value AT1G31885.1 | Symbols: NIP3;1 | NOD26-like intrinsic protein 3;... 1186 0.0 AT2G21020.1 | Symbols: | pseudogene, major intrinsic protein (... 475 2e-133 > AT1G31885.1 | Symbols: NIP3;1 | NOD26-like intrinsic protein 3;1 | chr1:11450460-11451985 FORWARD LENGTH=972 Length=972 Score = 1186 bits (642), Expect = 0.0 Identities = 756/812 (93%), Gaps = 4/812 (0%) Strand=Plus/Plus Query 1 ATGATATTTGCCGGCTGCTCAGCCATCGTGGTAAATGAGACGTACGGCAAACCGGTGACA 60 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 163 ATGATATTTGCCGGTTGCTCAGCCATCGTGGTAAATGAGACGTATGGCAAACCGGTGACA 222 Query 61 CTTCCCGGTATAGCTTTGGTATGGGGACTAACCGTAACGGTTATGATCTACTCAATCGGT 120 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 223 CTTCCCGGTATAGCTTTGGTATGGGGACTAGTCGTAACGGTTATGATCTACTCAATTGGT 282 Query 121 CATGTCTCCGGTGCACATTTCAACCCTGCTGTTTCCATTGCCTTTGCATCTTCTAAAAAG 180 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 283 CATGTCTCTGGTGCACATTTCAACCCTGCTGTTTCTATTGCCTTTGCCTCTTCTAAGAAG 342 Query 181 TTCCCTTTTAATCAGGTTCCAGGGTATATAGCCGCTCAAGTTCTCGGATCGACCTTAGCT 240 |||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||||| Sbjct 343 TTCCCTTTTAATCAGGTTCCGGGGTACATTGCCGCTCAACTTCTCGGATCGACCTTAGCG 402 Query 241 GCTGCAGCTT-TACGGCTTTTGTTTCATCTGA-ATGATGATGTTTGTAGCCTCAAAGGCG 298 ||||||| || |||||||| |||| ||||| | | || |||||||||||||||||||||| Sbjct 403 GCTGCAG-TTCTACGGCTTGTGTTCCATCT-AGACGACGATGTTTGTAGCCTCAAAGGCG 460 Query 299 ATGTTTACGTTGGAACATATCCATCAAACTCAACCACGACGTCATTTGTAATGGAGTTCA 358 ||||||| || ||||||||||| |||||||||| ||||| || || ||||||||||||| Sbjct 461 ATGTTTATGTGGGAACATATCCGTCAAACTCAAATACGACCTCGTTCGTAATGGAGTTCA 520 Query 359 TTGCTACTTTCAATCTAATGTTCGTTATATCTGCTGTCGCTACCGATAAACGAGCCACGG 418 | |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| | Sbjct 521 TCGCTACTTTCAATCTAATGTTTGTTATATCTGCTGTCGCAACCGATAAACGGGCCACCG 580 Query 419 GGTCACTCGCTGGAATCGCTATTGGCGCAACCGTAGTACTCGACATCCTTTTCTCCGGGC 478 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 581 GGTCATTCGCTGGAATCGCTATTGGCGCAACCATAGTACTCGACATCCTTTTCTCCGGGC 640 Query 479 CAATATCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGGGAT 538 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 641 CAATTTCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGGGAT 700 Query 539 GTTATAAGGACTTATGGTTATACATAATTTCACCGGTGCTCGGAGCATTATCAGGTGCAT 598 |||||||||| ||||||||||||||| ||||||| ||| |||| |||||||||||||||| Sbjct 701 GTTATAAGGATTTATGGTTATACATAGTTTCACCCGTGATCGGGGCATTATCAGGTGCAT 760 Query 599 GGACTTACAATTTGTTACGATCCACAAAGAAATCATATAGTGAGATTATTCGTCCAAATT 658 ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 761 GGACTTATGGTTTGTTACGATCGACAAAGAAATCATATAGTGAGATTATTCGTCCAAATT 820 Query 659 GCAATAAAATTTCTTCGAGAGATCGCCAAGAAGCTTCTAAAGATGAGATTTGTGTTTTAC 718 |||||||| | |||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 821 GCAATAAAGTATCTTCGAGAGATCGCCAAGAAGCTTCCCAAGATGAGATTTGTGTTCTAC 880 Query 719 GAGTGGTTGATCCAGCTAACCAAAACTATTTTATATGTTCATCACCTAATGATATCAATG 778 ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 881 GAGTGGTTGATCCGGCTAATCAAAACTATTTTATATGTTCATCACCTACTGATATCAATG 940 Query 779 GTAAATGTAATGTTACATGTAAGTTGGCGTGA 810 | |||||||||||||||||||||||||||||| Sbjct 941 GCAAATGTAATGTTACATGTAAGTTGGCGTGA 972 > AT2G21020.1 | Symbols: | pseudogene, major intrinsic protein (MIP) family, contains Pfam profile: MIP PF00230; blastp match of 61% identity and 1.8e-40 P-value to PIR|S01444|S01444 nodulin-26 precursor - soybean | chr2:9022778-9024211 REVERSE LENGTH=1434 Length=1434 Score = 475 bits (257), Expect = 2e-133 Identities = 310/335 (93%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 476 GGCCAATATCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGG 535 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 947 GGCCAATTTCGGGAGCATCTATGAATCCAGCAAGAAGCTTAGGGCCTGCACTTATATGGG 1006 Query 536 GATGTTATAAGGACTTATGGTTATACATAATTTCACCGGTGCTCGGAGCATTATCAGGTG 595 ||||||||||||| ||||||||||||||| ||||||| | |||||||||||||||| Sbjct 1007 GATGTTATAAGGATTTATGGTTATACATAGTTTCACC----C--GGAGCATTATCAGGTG 1060 Query 596 CATGGACTTACAATTTGTTACGATCCACAAAGAAATCATATAGTGAGATTATTCGTCCAA 655 |||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||||| Sbjct 1061 CATGGACTTATGGTTTGTTACGATCGACAACGAAATCATATAGTGAGATTATACGTCCAA 1120 Query 656 ATTGCAATAAAATTTCTTCGAGAGATCGCCAAGAAGCTTCTAAAGATGAGATTTGTGTTT 715 |||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1121 TTTGCAATAAAGTATCTTCGAGAGATCGCCAAGAAGCTTCCCAAGATGAGATTTGTGTTT 1180 Query 716 TACGAGTGGTTGATCCAGCTAACCAAAACTATTTTATATGTTCATCACCTAATGATATCA 775 |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| Sbjct 1181 TACGAGTGGTTGATCCGGCTAATCAAAACTATTTTATATGTTCATCACCTACCGATATCA 1240 Query 776 ATGGTAAATGTAATGTTACATGTAAGTTGGCGTGA 810 |||| |||||||||||||||||||||||||||||| Sbjct 1241 ATGGCAAATGTAATGTTACATGTAAGTTGGCGTGA 1275 Score = 326 bits (176), Expect = 3e-88 Identities = 190/197 (96%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 1 ATGATATTTGCCGGCTGCTCAGCCATCGTGGTAAATGAGACGTACGGCAAACCGGTGACA 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 567 ATGATATTTGCCGGCTGCTCAGCCATCGTGGTAAATGAGACGTACGGTAAACCGGTGACA 626 Query 61 CTTCCCGGTATAGCTTTGGTATGGGGACTAACCGTAACGGTTATGATCTACTCAATCGGT 120 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 627 CTTCCCGGTATAGCTTTGGTATGGGGACTAGTCGTAACGGTTATGATCTACTCAATTGGT 686 Query 121 CATGTCTCCGGTGCACATTTCAACCCTGCTGTTTCCATTGCCTTTGCATCTTCTAAAAAG 180 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 687 CATGTCTCCGGTGCACATTTCAACCCTGCTGTTTCTATTGCCTTTGCCTCTTCTAAGAAG 746 Query 181 TTCCCTTTTAATCAGGT 197 ||||||||||||||||| Sbjct 747 TTCCCTTTTAATCAGGT 763 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39433805395 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5