BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913002
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family... 2582 0.0
> AT1G31970.1 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family
protein | chr1:11479866-11482890 FORWARD LENGTH=1852
Length=1852
Score = 2582 bits (1398), Expect = 0.0
Identities = 1553/1626 (96%), Gaps = 18/1626 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGA-AAATTCCAAGAGCTTCCCATCTCCGGCGAACCTTTAGCCGCCGAGAGTCC 59
||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 56 ATGGCTGGACAAA-AGCAAGAGCTTCCCGTCTCCGGCGAACCTTTAGCCGTCGAGAGTCC 114
Query 60 GATGATCAATaagaagaagaagaagagcaagaagaaCAAACACACAGAGGAAATTCATGA 119
||||| ||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||
Sbjct 115 GATGACCAACAAGAAGAAGAAGAAAAGCAAGAAGAACAAACATACAGAGGAAAATCATGA 174
Query 120 AGTC---GAAGTGCCTCAAGAGGTCACGAATGGTGTagaggaagagttgagtaataagga 176
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 175 AGTCGAAGAAGTGCCTCAAGAGGTCACTAATGGTGTAGAGGAAGAGTTGAGTAATAAAGA 234
Query 177 gaagaagaagaaacgtaagagagaggagaaacagat-tgagaagaataagaagaaggatg 235
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct 235 GAAGAAGAAGAAACGTAAGAGAGAGGAGAAAGAG-TCTGAGAAGAATAAGAAGAAGGATG 293
Query 236 tcccggagaagaagctagaagCTGAGGATTTAAGTGTTACCAATGGAGGAGAGAGTGAAC 295
|||||||||||||||| |||||||||||||| || | | | ||||||||||||||
Sbjct 294 TCCCGGAGAAGAAGCTTGAAGCTGAGGATTT-AG-G------A-GAAGGAGAGAGTGAAC 344
Query 296 AACAGAAGGTTGTTGTGACTGGTAAAGATGTGGAAGAGGCAAAGTACGCACCTTTGAAGA 355
|||||||||||||||||||||| |||| ||||||||| |||||||||||| |||||||||
Sbjct 345 AACAGAAGGTTGTTGTGACTGGGAAAGGTGTGGAAGAAGCAAAGTACGCAGCTTTGAAGA 404
Query 356 CTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGATTGTTGTAAGACTTTCGAGAAAC 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 405 CTTTTGCTGAATCGAATTTGCCGGAGAATGTTTTAGATTGTTGTAAGACTTTCGAGAAGC 464
Query 416 CGTCTCCGATTCAGTCACATACATGGCCGTTTTTGTTAGATGGTCGTGATCTTATCGGGA 475
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 465 CGTCTCCGATTCAGTCACATACGTGGCCGTTTTTGTTAGATGGGCGTGATCTTATCGGGA 524
Query 476 TTGCGAAAACTGGGTCAGGTAAGACATTGGCTTTTGGGATTCCTGCGATTATGCATGTGT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TTGCGAAAACTGGGTCAGGTAAGACATTGGCTTTTGGGATTCCTGCGATTATGCATGTGT 584
Query 536 TGAAGAAGAATAAGAAGATTGGTGGAGGATCAAAGAATGTTAATCCTACTTGTTTGGTTC 595
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 585 TGAAGAAAAATAAGAAGATTGGTGGAGGATCAAAGAAGGTTAATCCTACTTGTTTAGTTC 644
Query 596 TTTCTCCTACACGAGAATTGGCTGTTCAGATTTCTGATGTTTTGAGTGAAGCTGGAGAAC 655
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 645 TTTCTCCTACACGAGAATTGGCTGTTCAGATTTCTGATGTTTTGCGTGAAGCTGGAGAAC 704
Query 656 CATGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAAGGCCTCAAATAAATG 715
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 705 CGTGTGGTTTGAAATCGATTTGTGTGTATGGTGGAAGCTCTAAAGGGCCTCAAATAAGTG 764
Query 716 CAATTCGATCTGGAGTTGATATTGTCATTGGTACGCCTGGTCGATTGAGAGACTTGATTG 775
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 765 CAATTCGATCTGGAGTTGATATTGTCATTGGTACGCCTGGTCGTTTGAGAGACTTGATTG 824
Query 776 AGTCTAATGAGCTTCGTCTCTCGGATGTTTCCTTTGTGGTATTGGATGAAGCAGATCGAA 835
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 825 AGTCTAATGTGCTTCGTCTCTCGGATGTTTCCTTTGTCGTATTGGATGAAGCAGATCGAA 884
Query 836 TGCTTGATATGGGTTTCGAGGAACCTGTTCGGTTTATATTGAGCAAGACAAATAAAGTTC 895
|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 885 TGCTTGATATGGGTTTCGAGGAACCTGTCCGGTTTATATTGAGTAACACAAATAAAGTTC 944
Query 896 GTCAGATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCTCAGGAAT 955
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 945 GTCAAATGGTTATGTTCAGTGCAACTTGGCCTTTGGATGTTCACAAATTGGCCCAGGAAT 1004
Query 956 TCATGGATCCAAATCCAATCAAGGTAG-TCATAGGTTCCGTAGATTTAGCTGCCAACCAC 1014
||||||||||||||||||||||||| | |||||||||| ||||| |||||||||||||||
Sbjct 1005 TCATGGATCCAAATCCAATCAAGGT-GATCATAGGTTCTGTAGACTTAGCTGCCAACCAC 1063
Query 1015 GACGTTATGCAAATCATTGAGGTCTTGGATGAACGTGCGCGTGATCAGCGTCTTGTTGCT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1064 GACGTTATGCAAATCATTGAGGTCTTGGATGAACGTGCGCGTGATCAGCGTCTCATTGCA 1123
Query 1075 TTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTATTTGCATTATACAAG 1134
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1124 TTACTAGAAAAATACCATAAATCTCAAAAGAACAGGGTTTTGGTATTTGCTTTATACAAG 1183
Query 1135 GTGGAAGCTGAACGTCTCGAGCGTTTTCTTCAGCAAAGAGGTTGGAAAGCTGTATCTATA 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 GTGGAAGCTGAACGTCTCGAGCGTTTTCTTCAGCAAAGAGGTTGGAAAGCTGTATCTATA 1243
Query 1195 CACGGAAACAAAGCACAAAGCGAACGTACCAGGTCTTTATCATTGTTCAAAGAAGGATCC 1254
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 CACGGAAACAAAGCACAGAGCGAACGTACCAGGTCTTTATCATTGTTCAAAGAAGGATCC 1303
Query 1255 TGCCCGCTACTGGTGGCTACTGATGTTGCAGCAAGAGGGCTCGATATCCCAGACGTGGAA 1314
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1304 TGCCCGTTACTGGTGGCTACTGATGTTGCAGCAAGAGGGCTTGATATCCCGGACGTGGAA 1363
Query 1315 GTTGTGATAAACTACACTTTCCCTTTAACAACAGAGGATTATGTACACAGAATCGGGAGG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 GTTGTGATAAACTACACTTTCCCTTTAACAACAGAGGATTATGTACACAGAATCGGGAGG 1423
Query 1375 ACAGGAAGAGCGGGTAAAAAGGGCGTTGCACACACATTCTTCACGCAACAGAACAAGGGT 1434
||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 1424 ACAGGAAGAGCGGGTAAAAAGGGCGTTGCACACACCTTCTTCACGCCACTGAACAAGGGT 1483
Query 1435 CTTGCCGGAGAACTTGTGAATGTTCTCAGGGAAGCAGGACAAGTTGTGCCAGATGATCTT 1494
||||| |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 1484 CTTGCAGGAGAACTTGTGAATGTTCTTAGGGAAGCAGGACAAGTAGTGCCAGCTGATCTT 1543
Query 1495 TTGAAGTTTGGCACTCATGTAAAGAAAAAGGAATCAAAATTGTATGGAGCTCATTTCAAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 TTGAAGTTTGGCACTCATGTAAAGAAAAAGGAATCAAAATTGTATGGAGCTCATTTCAAA 1603
Query 1555 GAAATAGCAGCTGATGCTCCAAAAGCTACGAAGATCACATTCGATAATTCTGATGACGAA 1614
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1604 GAAATAGCTGCTGATGCTCCTAAAGCTACGAAGATCACATTCGATAATTCTGATGACGAA 1663
Query 1615 GACTAG 1620
||||||
Sbjct 1664 GACTAG 1669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5