BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913019 Length=1800 Score E Sequences producing significant alignments: (Bits) Value AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-... 1480 0.0 AT3G19880.1 | Symbols: | F-box and associated interaction doma... 95.3 2e-18 AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination e... 80.5 5e-14 AT5G36730.1 | Symbols: | F-box and associated interaction doma... 73.1 9e-12 AT5G36820.1 | Symbols: | F-box and associated interaction doma... 73.1 9e-12 AT3G16880.1 | Symbols: | F-box and associated interaction doma... 73.1 9e-12 AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 65.8 1e-09 AT3G16820.1 | Symbols: | F-box and associated interaction doma... 62.1 2e-08 > AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-11564833 REVERSE LENGTH=1776 Length=1776 Score = 1480 bits (801), Expect = 0.0 Identities = 1061/1184 (90%), Gaps = 28/1184 (2%) Strand=Plus/Plus Query 1 ATGACGAAGATGTCCGATCTTTCACATGATTTGGTCGAAGAGATATTGTGTATGGTTCCG 60 ||||||| ||||||||| ||||||| |||||| ||||||||||||||||||| ||||||| Sbjct 1 ATGACGATGATGTCCGACCTTTCACTTGATTTAGTCGAAGAGATATTGTGTAGGGTTCCG 60 Query 61 ATAACTTCTC-TAAGAGCAGTGAGATCCACG-TGCAAACTATGGAACGTT-TTATCCAAA 117 |||||||||| ||| |||||||||||| | | |||||||||||||||||| || ||||| Sbjct 61 ATAACTTCTCTTAA-AGCAGTGAGATCTA-GTTGCAAACTATGGAACGTTCTT-TCCAAG 117 Query 118 AACCGGATTTTATGTAAAGCAGAAGCTAGAAATCAGTTTTTAGGGTTCACGATGATGAAT 177 |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 118 AACCGGATTTTATGTAAAACAGAAGCTAGAAATCAGTTTTTAGGGTTCACGATAATGAAT 177 Query 178 CATAGGCTTTATTCGATGAGATTCAATCTCCATGGAATCGGCCTCAACGAAGACGGTGAA 237 |||||||||||||| |||||||||||||||||||||||||||||||| ||| || ||||| Sbjct 178 CATAGGCTTTATTCCATGAGATTCAATCTCCATGGAATCGGCCTCAATGAAAACAGTGAA 237 Query 238 GAGTTCACTGATCCATCAATAAAGCCAATAGGTGATATACTTAATCAGGTCGAGATATCT 297 ||||||| ||||||||| ||||||||||||||| || |||||||||| |||||||||||| Sbjct 238 GAGTTCATTGATCCATCTATAAAGCCAATAGGTAATTTACTTAATCAAGTCGAGATATCT 297 Query 298 AAAGTCTTTTATTGCGAAGGTTTATTGTTATGCGTCACAAGGAACCACTCAAGCAAGCTC 357 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AAAGTGTTTTATTGCGAAGGTTTATTGTTATGCGTCACAAGGAACCACTCAAGCAAGCTC 357 Query 358 GTAGTTTGGAACCCCTATTTGGGACAAACTAGGTGGATCCAACCTAGCAATGATTACCAC 417 |||||||||||||| ||||||||| ||| | | |||||| || |||| |||||||||||| Sbjct 358 GTAGTTTGGAACCCGTATTTGGGAGAAATTCGTTGGATCAAAACTAGGAATGATTACCAC 417 Query 418 ATAGGCGTTACATACGCTCTAGGGTACGACAACAACAAGAACCACAAGATCTTGAGGTTT 477 |||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 418 ATAGGCGTTACATATGCTCTCGGGTACGACAACAACAAGAACCACATGATCTTGAGGTTT 477 Query 478 TTTGCTGGACAAGGCTCCTACGAAATTTACGATTTGAAGTCTAAT---TCGTGGAGTTTG 534 ||| ||| |||||||| |||||| |||||||| |||| ||| | || ||| | ||| Sbjct 478 TTTTCTGAACAAGGCTACTACGAGATTTACGACATGAACTCTTCTGACTCATGG-GATTG 536 Query 535 TCTT-ATGTCATTCCCATCAGGGGGTTAAAAAT-TTATCAGCCCGGCACGTCGTTAAATG 592 | || ||| |||||||| || |||||||||| | ||||||||||||| |||||||||||| Sbjct 537 TTTTTATGGCATTCCCAACAAGGGGTTAAAA-TGTTATCAGCCCGGCGCGTCGTTAAATG 595 Query 593 GAAATGCTTATTTTTTGACTGATGCAAGAAAAGTTATGGAAGGGTGTGATTGCTTACTCG 652 |||||||||||||||||||||| | |||| |||| |||||||||| |||||||||||||| Sbjct 596 GAAATGCTTATTTTTTGACTGAGGGAAGAGAAGTAATGGAAGGGTATGATTGCTTACTCG 655 Query 653 GTTTTGATTTTACAACAGAGAAATTTGGGC-AGCTTCTTTCTTTGTCGTTTTCGCATGAT 711 ||||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||| Sbjct 656 GTTTTGATTTTACAACAAAGAAATTTGGACCA-CTTCTTTCTTTGTCGTTTTCGCATGAT 714 Query 712 TTTACGGAGACTGGGAGACTATCTTGTGTTAATGGAGAGAAACTCGCGG-CATTATATCA 770 |||| |||||||||||||||||||||||||| ||||||||||| |||| | |||||||| Sbjct 715 TTTATAGAGACTGGGAGACTATCTTGTGTTAAAGGAGAGAAACTTGCGGTC-TTATATCA 773 Query 771 CCGCTACGAGACATTTGAGACGGAGATATGGGTGACAACTAAGATTGAGCCGAATGAGGT 830 |||| | | || | ||||| |||| ||||||||||||||||||| |||||||||| ||| Sbjct 774 GCGCTGCTATACCTATGAGATGGAGGTATGGGTGACAACTAAGATAGAGCCGAATGCGGT 833 Query 831 GTCGTGGAGCAAATTCTTAGCAGTTGATATGGAACCATTCACTAGTCTTAAGTTTCACGA 890 ||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||| Sbjct 834 GTCATGGAGCAAATTCTTAGCAGTTGAAATGGAACCACTCACTAGTCTAAAGTTTAACGA 893 Query 891 TGATGT-TGGCAGTTTCTTCATTGAAGAAGAGAAGAAAATCG-CAGTGCTTTTCGATTTA 948 |||| | |||||||||||||||||| |||||||||||||||| | ||| |||| ||| || Sbjct 894 TGAT-TCTGGCAGTTTCTTCATTGACGAAGAGAAGAAAATCGTC-GTGGTTTTTGATATA 951 Query 949 GATGAATCTGAACGCTACAATATAGTTTACATCATTGGTGATAATGGATGCTTGAAAGAA 1008 || |||||||||||| |||||| | |||||||||||| ||| ||||||||||||||||| Sbjct 952 GACGAATCTGAACGCAACAATACGGCTTACATCATTGGAGATTATGGATGCTTGAAAGAA 1011 Query 1009 GTGGATCTTGATGAAGTTGTGAACCCCCAAGAATCTGTCGAGGTCG-A--CCGCATGTT- 1064 || ||||||||||||||||||||||| ||||||||||| ||||||| | |||||| || Sbjct 1012 GTTGATCTTGATGAAGTTGTGAACCCACAAGAATCTGTGGAGGTCGGAGACCGCAT-TTA 1070 Query 1065 TTATTTTTCGCCATTTGTGTGCTCTTGCTCTTATGTTCCAAGTGTAGTGAAAATCAACCA 1124 || |||||| ||||||||||||||||||||||||||||||||| |||||||| | || | Sbjct 1071 TTCTTTTTCACCATTTGTGTGCTCTTGCTCTTATGTTCCAAGTTTAGTGAAATTTAAAGA 1130 Query 1125 A-ATTGCAGAACATGAAAGGAAATATAAGAAGAGGAAGAGGAAG 1167 | || |||||||||||||||||| |||||||||||||||| ||| Sbjct 1131 AGAT-GCAGAACATGAAAGGAAAGATAAGAAGAGGAAGAGTAAG 1173 Score = 534 bits (289), Expect = 9e-151 Identities = 470/550 (85%), Gaps = 41/550 (7%) Strand=Plus/Plus Query 1266 TGGATATGATTTTATACTGTGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCC 1325 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1194 TGGATATGATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCC 1253 Query 1326 TCTGCCGTTTAAACA-----TT----ATATTTGGACTCTATCTTGTGTCAAAGAAGAGAA 1376 ||||||||||||||| || ||| |||||||||||||| ||| ||||||||||| Sbjct 1254 TCTGCCGTTTAAACATTCTTTTAGGGATACTTGGACTCTATCTTCTGTTAAAGAAGAGAA 1313 Query 1377 ACTCGCAGTCGCGGTGTTATGTTGGGAAAATACA--TATG-TGATAGAGATATGGATGAC 1433 ||| |||||||| ||||||| ||| |||||||| | || ||||||||||||||||||| Sbjct 1314 ACTTGCAGTCGCAGTGTTATACTGGAAAAATACATGTGTGATGATAGAGATATGGATGAC 1373 Query 1434 AATTAAGATTGATCCTAATGCCGCGTCGTGGAGCAAATTCTTAAGAGTTGATAGGAAACC 1493 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1374 AATTAAGATTGATCCTAATGTCGAGTCGTGGAGCAAATTCTTAAGAGTTGATAGGAAACC 1433 Query 1494 ACCCATTGGTCTTGGCTTTGTGTTTGCTAATCGTGATGACAGTTTCTTCATTGACGAAGA 1553 | ||||| |||| |||||| | | | |||| |||||||||| |||||||||||||| Sbjct 1434 ATGCATTGATCTTCGCTTTGA-T--G--A-TCGTAATGACAGTTTTTTCATTGACGAAGA 1487 Query 1554 GAAGAAAGTCGCCGTGGTTTTTAGTTCAGACGAAGTTGAAACCTCTACTGCTTATATCAT 1613 ||||||||| | |||| |||||||||||||| ||||| |||||||||| ||||| |||| Sbjct 1488 GAAGAAAGTTGTCGTGTTTTTTAGTTCAGACAAAGTTAAAACCTCTACGGCTTACGTCAT 1547 Query 1614 TAGAGATAATAAATATTTGAAAACAGTGGATCTTGAAAAAGCTGCAAACTTCCAAGAATC 1673 | ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 1548 TGGAGATAATAGATATTTGAGAACAGTGGATCTTGAAAAAGCTGCAAACTCCCAAGAATC 1607 Query 1674 T-T-----T-G---------T--ATTGTTTTTTGCCACTTGTGTGCTCCTGCAGCTCTTA 1715 | | | | | ||||||||| ||| ||||||||||| ||| ||||| Sbjct 1608 TGTGGAGGTCGGAGAACGCGTGTATTGTTTTTCGCCGCTTGTGTGCTCTTGC---TCTTA 1664 Query 1716 TTATGTTCCAAGTTTGGTGCAAATCAACCA-AATTGCAGGACACAAAAGTAAAGATAAGA 1774 ||||||||||||||||||| |||||||||| ||| ||||||| |||||| ||||| |||| Sbjct 1665 TTATGTTCCAAGTTTGGTGAAAATCAACCACAAT-GCAGGACGCAAAAGGAAAGAGAAGA 1723 Query 1775 AGAGGAAGCG 1784 ||| |||||| Sbjct 1724 AGACGAAGCG 1733 Score = 119 bits (64), Expect = 1e-25 Identities = 320/434 (74%), Gaps = 55/434 (13%) Strand=Plus/Plus Query 1270 TATGATT-TTATACT-GTGTTTTGATTTTACAACAGAGAGATTTGGA-CAGATTCTTCCT 1326 ||||||| | |||| | ||||||||||||||||| ||| ||||||| || ||||| || Sbjct 640 TATGATTGCT-TACTCG-GTTTTGATTTTACAACAAAGAAATTTGGACCA-CTTCTTTCT 696 Query 1327 CTGCCGTTTAAACATTATATT-T-G-GACT------CTATCTTGTGTCAAAGAAGAGAAA 1377 || ||||| ||| || || | | |||| ||||||||||| |||| ||||||| Sbjct 697 TTGTCGTTTTCGCATGATTTTATAGAGACTGGGAGACTATCTTGTGTTAAAGGAGAGAAA 756 Query 1378 CTCGCAGTCGCGGTGTTATGT-TG-G--GAAAATACATATGTGATAGAGATATGGATGAC 1433 || | ||||| |||| | | | | |||| |||| ||| ||| ||||| |||| Sbjct 757 CT-----T-GCGGTCTTATATCAGCGCTG-CTATACCTATGAGATGGAGGTATGGGTGAC 809 Query 1434 AATTAAGATTGATCCTAATGCCGCGTCGTGGAGCAAATTCTTAAG-AGTTGATA-GGAAA 1491 || |||||| || || ||||| | ||| |||||||||||||| || |||||| | || || Sbjct 810 AACTAAGATAGAGCCGAATGCGGTGTCATGGAGCAAATTCTT-AGCAGTTGAAATGG-AA 867 Query 1492 CCACCCATTGGTCT-TGGCTTT-GTGTTTGCTAATCGTGATGACAGTTTCTTCATTGACG 1549 |||| || | |||| | ||| | || | || || | ||||||||||||||||| Sbjct 868 CCACTCACTAGTCTAAAG-TTTAACG-ATG--ATTC-TG--G-CAGTTTCTTCATTGACG 919 Query 1550 AAGAGAAGAAAGTCGCCGTGGTTTTT-AGT-TCAGACGAAGT-TGAAAC-CT-C--TACT 1602 ||||||||||| ||| |||||||||| | | | ||||||| | |||| | | | ||| Sbjct 920 AAGAGAAGAAAATCGTCGTGGTTTTTGA-TAT-AGACGAA-TCTGAA-CGCAACAATACG 975 Query 1603 GCTTATATCATTAGAGATAATAAATATTTGAAA-ACAGTGGATCTTGAAAAAGCTGCAAA 1661 ||||| |||||| ||||| || || |||||| | ||| |||||||| ||| || || Sbjct 976 GCTTACATCATTGGAGATTATGGATGCTTGAAAGA-AGTTGATCTTGATGAAGTTGTGAA 1034 Query 1662 CTTC-CAAGAATCT 1674 | | ||||||||| Sbjct 1035 CC-CACAAGAATCT 1047 > AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6911435-6912604 REVERSE LENGTH=1170 Length=1170 Score = 95.3 bits (51), Expect = 2e-18 Identities = 102/125 (82%), Gaps = 9/125 (7%) Strand=Plus/Plus Query 1530 TGACAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCCGTGGTTTTTAGTTCAGACGAAGT 1589 ||||||||||||||||||||||||||||||| |||| ||||||||||||||| || || | Sbjct 906 TGACAGTTTCTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAGTTCAAACAAA-T 964 Query 1590 TGAAAC-CT-CTA--CTGCTTATATCATTAGAGATA-ATAAATATTTGAAA-ACAGTGGA 1643 ||| || | | | ||||| || ||| |||| | ||| ||| |||||| | |||||| Sbjct 965 CAAAATGCTACAAAACAGCTTACATTATTGGAGA-AGATAGATACTTGAAAGA-AGTGGA 1022 Query 1644 TCTTG 1648 ||||| Sbjct 1023 TCTTG 1027 > AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination effector family protein | chr1:21933021-21934216 FORWARD LENGTH=795 Length=795 Score = 80.5 bits (43), Expect = 5e-14 Identities = 211/287 (74%), Gaps = 31/287 (11%) Strand=Plus/Plus Query 1301 CAGAGAGATTTGGACAG-ATTCTTCCTCTGCC-GTTTAAACATTAT-AT-TTG-GACTCT 1355 |||| |||||||||| | | |||||||||||| ||| | | |||| || | |||||| Sbjct 350 CAGAAAGATTTGGACCGCA-TCTTCCTCTGCCGGTTCACTC-TTATGATGACGTGACTCT 407 Query 1356 ATCTTGTGTCAAAGAAGAGAAACTCGCAGTCGCGGTGTTATGTTGGG-A-AA--ATACAT 1411 ||||||||||| | ||||| | || | || |||||| |||| | || | ||| Sbjct 408 ATCTTGTGTCAGACAAGAG---C-AGC--TTGCTTTGTTAT-ATGGGAACAACGAGACAG 460 Query 1412 ATG--TGA-TAGAGATATGGATGACAATTAAGATTGATCCTAATGCCGCGTCGTGGAGCA 1468 ||| | | ||||||| ||||| |||| | |||||||||| ||||| | ||||||||||| Sbjct 461 ATGATTCATTAGAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCA 520 Query 1469 AATTCTT-AAGAGTTGATAGGAAACCACCCATTGGTCTTGGCTTTGTG-TTTGCTAATCG 1526 ||| || || ||| |||| ||||| | |||||| || | | || | ||| Sbjct 521 TATTTTTGAA-AGTGGATATCAAACCGCTTATTGGT-TT-TCCAAAAGACTT-C-GATCC 575 Query 1527 TGATGACAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCCGTGGTTT 1573 || | || |||||||||||||||||||||||||||| ||||||| Sbjct 576 TG--G-GAGCTTCTTCATTGACGAAGAGAAGAAAGTCGTTGTGGTTT 619 > AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14436317-14437549 FORWARD LENGTH=1233 Length=1233 Score = 73.1 bits (39), Expect = 9e-12 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 1285 TGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTTT 1335 ||||||||||||||||||||||||||||||| | ||||| |||||||||| Sbjct 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTT 765 > AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:14495617-14496849 FORWARD LENGTH=1233 Length=1233 Score = 73.1 bits (39), Expect = 9e-12 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 1285 TGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTTT 1335 ||||||||||||||||||||||||||||||| | ||||| |||||||||| Sbjct 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTT 765 > AT3G16880.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:5766733-5767830 FORWARD LENGTH=1098 Length=1098 Score = 73.1 bits (39), Expect = 9e-12 Identities = 45/48 (94%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 1287 TTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTT 1334 ||||||||||||||||||||||||||||| || ||| ||||||||||| Sbjct 657 TTTTGATTTTACAACAGAGAGATTTGGACCGACTCTGCCTCTGCCGTT 704 > AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508 FORWARD LENGTH=2038 Length=2038 Score = 65.8 bits (35), Expect = 1e-09 Identities = 51/58 (88%), Gaps = 4/58 (7%) Strand=Plus/Plus Query 1280 TACTGTGTTTTGATTTTACAACAGAGAGATTTGGACAGAT-TCTT-CCTCTGCCGTTT 1335 |||| ||||||||||||||||||||||||||||||| | | | || ||||||| |||| Sbjct 735 TACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCG-TGT-TTGCCTCTGCTGTTT 790 > AT3G16820.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:5728016-5729174 REVERSE LENGTH=942 Length=942 Score = 62.1 bits (33), Expect = 2e-08 Identities = 45/51 (88%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 1285 TGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTTT 1335 ||||||||||||||||||||||||||||||| | ||| ||||||| ||| Sbjct 505 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTACTCTGCCTTTT 555 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89055766830 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5