BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913019
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-... 1480 0.0
AT3G19880.1 | Symbols: | F-box and associated interaction doma... 95.3 2e-18
AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination e... 80.5 5e-14
AT5G36730.1 | Symbols: | F-box and associated interaction doma... 73.1 9e-12
AT5G36820.1 | Symbols: | F-box and associated interaction doma... 73.1 9e-12
AT3G16880.1 | Symbols: | F-box and associated interaction doma... 73.1 9e-12
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 65.8 1e-09
AT3G16820.1 | Symbols: | F-box and associated interaction doma... 62.1 2e-08
> AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-11564833
REVERSE LENGTH=1776
Length=1776
Score = 1480 bits (801), Expect = 0.0
Identities = 1061/1184 (90%), Gaps = 28/1184 (2%)
Strand=Plus/Plus
Query 1 ATGACGAAGATGTCCGATCTTTCACATGATTTGGTCGAAGAGATATTGTGTATGGTTCCG 60
||||||| ||||||||| ||||||| |||||| ||||||||||||||||||| |||||||
Sbjct 1 ATGACGATGATGTCCGACCTTTCACTTGATTTAGTCGAAGAGATATTGTGTAGGGTTCCG 60
Query 61 ATAACTTCTC-TAAGAGCAGTGAGATCCACG-TGCAAACTATGGAACGTT-TTATCCAAA 117
|||||||||| ||| |||||||||||| | | |||||||||||||||||| || |||||
Sbjct 61 ATAACTTCTCTTAA-AGCAGTGAGATCTA-GTTGCAAACTATGGAACGTTCTT-TCCAAG 117
Query 118 AACCGGATTTTATGTAAAGCAGAAGCTAGAAATCAGTTTTTAGGGTTCACGATGATGAAT 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 118 AACCGGATTTTATGTAAAACAGAAGCTAGAAATCAGTTTTTAGGGTTCACGATAATGAAT 177
Query 178 CATAGGCTTTATTCGATGAGATTCAATCTCCATGGAATCGGCCTCAACGAAGACGGTGAA 237
|||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 178 CATAGGCTTTATTCCATGAGATTCAATCTCCATGGAATCGGCCTCAATGAAAACAGTGAA 237
Query 238 GAGTTCACTGATCCATCAATAAAGCCAATAGGTGATATACTTAATCAGGTCGAGATATCT 297
||||||| ||||||||| ||||||||||||||| || |||||||||| ||||||||||||
Sbjct 238 GAGTTCATTGATCCATCTATAAAGCCAATAGGTAATTTACTTAATCAAGTCGAGATATCT 297
Query 298 AAAGTCTTTTATTGCGAAGGTTTATTGTTATGCGTCACAAGGAACCACTCAAGCAAGCTC 357
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAAGTGTTTTATTGCGAAGGTTTATTGTTATGCGTCACAAGGAACCACTCAAGCAAGCTC 357
Query 358 GTAGTTTGGAACCCCTATTTGGGACAAACTAGGTGGATCCAACCTAGCAATGATTACCAC 417
|||||||||||||| ||||||||| ||| | | |||||| || |||| ||||||||||||
Sbjct 358 GTAGTTTGGAACCCGTATTTGGGAGAAATTCGTTGGATCAAAACTAGGAATGATTACCAC 417
Query 418 ATAGGCGTTACATACGCTCTAGGGTACGACAACAACAAGAACCACAAGATCTTGAGGTTT 477
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 418 ATAGGCGTTACATATGCTCTCGGGTACGACAACAACAAGAACCACATGATCTTGAGGTTT 477
Query 478 TTTGCTGGACAAGGCTCCTACGAAATTTACGATTTGAAGTCTAAT---TCGTGGAGTTTG 534
||| ||| |||||||| |||||| |||||||| |||| ||| | || ||| | |||
Sbjct 478 TTTTCTGAACAAGGCTACTACGAGATTTACGACATGAACTCTTCTGACTCATGG-GATTG 536
Query 535 TCTT-ATGTCATTCCCATCAGGGGGTTAAAAAT-TTATCAGCCCGGCACGTCGTTAAATG 592
| || ||| |||||||| || |||||||||| | ||||||||||||| ||||||||||||
Sbjct 537 TTTTTATGGCATTCCCAACAAGGGGTTAAAA-TGTTATCAGCCCGGCGCGTCGTTAAATG 595
Query 593 GAAATGCTTATTTTTTGACTGATGCAAGAAAAGTTATGGAAGGGTGTGATTGCTTACTCG 652
|||||||||||||||||||||| | |||| |||| |||||||||| ||||||||||||||
Sbjct 596 GAAATGCTTATTTTTTGACTGAGGGAAGAGAAGTAATGGAAGGGTATGATTGCTTACTCG 655
Query 653 GTTTTGATTTTACAACAGAGAAATTTGGGC-AGCTTCTTTCTTTGTCGTTTTCGCATGAT 711
||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||||
Sbjct 656 GTTTTGATTTTACAACAAAGAAATTTGGACCA-CTTCTTTCTTTGTCGTTTTCGCATGAT 714
Query 712 TTTACGGAGACTGGGAGACTATCTTGTGTTAATGGAGAGAAACTCGCGG-CATTATATCA 770
|||| |||||||||||||||||||||||||| ||||||||||| |||| | ||||||||
Sbjct 715 TTTATAGAGACTGGGAGACTATCTTGTGTTAAAGGAGAGAAACTTGCGGTC-TTATATCA 773
Query 771 CCGCTACGAGACATTTGAGACGGAGATATGGGTGACAACTAAGATTGAGCCGAATGAGGT 830
|||| | | || | ||||| |||| ||||||||||||||||||| |||||||||| |||
Sbjct 774 GCGCTGCTATACCTATGAGATGGAGGTATGGGTGACAACTAAGATAGAGCCGAATGCGGT 833
Query 831 GTCGTGGAGCAAATTCTTAGCAGTTGATATGGAACCATTCACTAGTCTTAAGTTTCACGA 890
||| ||||||||||||||||||||||| ||||||||| |||||||||| |||||| ||||
Sbjct 834 GTCATGGAGCAAATTCTTAGCAGTTGAAATGGAACCACTCACTAGTCTAAAGTTTAACGA 893
Query 891 TGATGT-TGGCAGTTTCTTCATTGAAGAAGAGAAGAAAATCG-CAGTGCTTTTCGATTTA 948
|||| | |||||||||||||||||| |||||||||||||||| | ||| |||| ||| ||
Sbjct 894 TGAT-TCTGGCAGTTTCTTCATTGACGAAGAGAAGAAAATCGTC-GTGGTTTTTGATATA 951
Query 949 GATGAATCTGAACGCTACAATATAGTTTACATCATTGGTGATAATGGATGCTTGAAAGAA 1008
|| |||||||||||| |||||| | |||||||||||| ||| |||||||||||||||||
Sbjct 952 GACGAATCTGAACGCAACAATACGGCTTACATCATTGGAGATTATGGATGCTTGAAAGAA 1011
Query 1009 GTGGATCTTGATGAAGTTGTGAACCCCCAAGAATCTGTCGAGGTCG-A--CCGCATGTT- 1064
|| ||||||||||||||||||||||| ||||||||||| ||||||| | |||||| ||
Sbjct 1012 GTTGATCTTGATGAAGTTGTGAACCCACAAGAATCTGTGGAGGTCGGAGACCGCAT-TTA 1070
Query 1065 TTATTTTTCGCCATTTGTGTGCTCTTGCTCTTATGTTCCAAGTGTAGTGAAAATCAACCA 1124
|| |||||| ||||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 1071 TTCTTTTTCACCATTTGTGTGCTCTTGCTCTTATGTTCCAAGTTTAGTGAAATTTAAAGA 1130
Query 1125 A-ATTGCAGAACATGAAAGGAAATATAAGAAGAGGAAGAGGAAG 1167
| || |||||||||||||||||| |||||||||||||||| |||
Sbjct 1131 AGAT-GCAGAACATGAAAGGAAAGATAAGAAGAGGAAGAGTAAG 1173
Score = 534 bits (289), Expect = 9e-151
Identities = 470/550 (85%), Gaps = 41/550 (7%)
Strand=Plus/Plus
Query 1266 TGGATATGATTTTATACTGTGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCC 1325
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1194 TGGATATGATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCC 1253
Query 1326 TCTGCCGTTTAAACA-----TT----ATATTTGGACTCTATCTTGTGTCAAAGAAGAGAA 1376
||||||||||||||| || ||| |||||||||||||| ||| |||||||||||
Sbjct 1254 TCTGCCGTTTAAACATTCTTTTAGGGATACTTGGACTCTATCTTCTGTTAAAGAAGAGAA 1313
Query 1377 ACTCGCAGTCGCGGTGTTATGTTGGGAAAATACA--TATG-TGATAGAGATATGGATGAC 1433
||| |||||||| ||||||| ||| |||||||| | || |||||||||||||||||||
Sbjct 1314 ACTTGCAGTCGCAGTGTTATACTGGAAAAATACATGTGTGATGATAGAGATATGGATGAC 1373
Query 1434 AATTAAGATTGATCCTAATGCCGCGTCGTGGAGCAAATTCTTAAGAGTTGATAGGAAACC 1493
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1374 AATTAAGATTGATCCTAATGTCGAGTCGTGGAGCAAATTCTTAAGAGTTGATAGGAAACC 1433
Query 1494 ACCCATTGGTCTTGGCTTTGTGTTTGCTAATCGTGATGACAGTTTCTTCATTGACGAAGA 1553
| ||||| |||| |||||| | | | |||| |||||||||| ||||||||||||||
Sbjct 1434 ATGCATTGATCTTCGCTTTGA-T--G--A-TCGTAATGACAGTTTTTTCATTGACGAAGA 1487
Query 1554 GAAGAAAGTCGCCGTGGTTTTTAGTTCAGACGAAGTTGAAACCTCTACTGCTTATATCAT 1613
||||||||| | |||| |||||||||||||| ||||| |||||||||| ||||| ||||
Sbjct 1488 GAAGAAAGTTGTCGTGTTTTTTAGTTCAGACAAAGTTAAAACCTCTACGGCTTACGTCAT 1547
Query 1614 TAGAGATAATAAATATTTGAAAACAGTGGATCTTGAAAAAGCTGCAAACTTCCAAGAATC 1673
| ||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1548 TGGAGATAATAGATATTTGAGAACAGTGGATCTTGAAAAAGCTGCAAACTCCCAAGAATC 1607
Query 1674 T-T-----T-G---------T--ATTGTTTTTTGCCACTTGTGTGCTCCTGCAGCTCTTA 1715
| | | | | ||||||||| ||| ||||||||||| ||| |||||
Sbjct 1608 TGTGGAGGTCGGAGAACGCGTGTATTGTTTTTCGCCGCTTGTGTGCTCTTGC---TCTTA 1664
Query 1716 TTATGTTCCAAGTTTGGTGCAAATCAACCA-AATTGCAGGACACAAAAGTAAAGATAAGA 1774
||||||||||||||||||| |||||||||| ||| ||||||| |||||| ||||| ||||
Sbjct 1665 TTATGTTCCAAGTTTGGTGAAAATCAACCACAAT-GCAGGACGCAAAAGGAAAGAGAAGA 1723
Query 1775 AGAGGAAGCG 1784
||| ||||||
Sbjct 1724 AGACGAAGCG 1733
Score = 119 bits (64), Expect = 1e-25
Identities = 320/434 (74%), Gaps = 55/434 (13%)
Strand=Plus/Plus
Query 1270 TATGATT-TTATACT-GTGTTTTGATTTTACAACAGAGAGATTTGGA-CAGATTCTTCCT 1326
||||||| | |||| | ||||||||||||||||| ||| ||||||| || ||||| ||
Sbjct 640 TATGATTGCT-TACTCG-GTTTTGATTTTACAACAAAGAAATTTGGACCA-CTTCTTTCT 696
Query 1327 CTGCCGTTTAAACATTATATT-T-G-GACT------CTATCTTGTGTCAAAGAAGAGAAA 1377
|| ||||| ||| || || | | |||| ||||||||||| |||| |||||||
Sbjct 697 TTGTCGTTTTCGCATGATTTTATAGAGACTGGGAGACTATCTTGTGTTAAAGGAGAGAAA 756
Query 1378 CTCGCAGTCGCGGTGTTATGT-TG-G--GAAAATACATATGTGATAGAGATATGGATGAC 1433
|| | ||||| |||| | | | | |||| |||| ||| ||| ||||| ||||
Sbjct 757 CT-----T-GCGGTCTTATATCAGCGCTG-CTATACCTATGAGATGGAGGTATGGGTGAC 809
Query 1434 AATTAAGATTGATCCTAATGCCGCGTCGTGGAGCAAATTCTTAAG-AGTTGATA-GGAAA 1491
|| |||||| || || ||||| | ||| |||||||||||||| || |||||| | || ||
Sbjct 810 AACTAAGATAGAGCCGAATGCGGTGTCATGGAGCAAATTCTT-AGCAGTTGAAATGG-AA 867
Query 1492 CCACCCATTGGTCT-TGGCTTT-GTGTTTGCTAATCGTGATGACAGTTTCTTCATTGACG 1549
|||| || | |||| | ||| | || | || || | |||||||||||||||||
Sbjct 868 CCACTCACTAGTCTAAAG-TTTAACG-ATG--ATTC-TG--G-CAGTTTCTTCATTGACG 919
Query 1550 AAGAGAAGAAAGTCGCCGTGGTTTTT-AGT-TCAGACGAAGT-TGAAAC-CT-C--TACT 1602
||||||||||| ||| |||||||||| | | | ||||||| | |||| | | | |||
Sbjct 920 AAGAGAAGAAAATCGTCGTGGTTTTTGA-TAT-AGACGAA-TCTGAA-CGCAACAATACG 975
Query 1603 GCTTATATCATTAGAGATAATAAATATTTGAAA-ACAGTGGATCTTGAAAAAGCTGCAAA 1661
||||| |||||| ||||| || || |||||| | ||| |||||||| ||| || ||
Sbjct 976 GCTTACATCATTGGAGATTATGGATGCTTGAAAGA-AGTTGATCTTGATGAAGTTGTGAA 1034
Query 1662 CTTC-CAAGAATCT 1674
| | |||||||||
Sbjct 1035 CC-CACAAGAATCT 1047
> AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6911435-6912604 REVERSE LENGTH=1170
Length=1170
Score = 95.3 bits (51), Expect = 2e-18
Identities = 102/125 (82%), Gaps = 9/125 (7%)
Strand=Plus/Plus
Query 1530 TGACAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCCGTGGTTTTTAGTTCAGACGAAGT 1589
||||||||||||||||||||||||||||||| |||| ||||||||||||||| || || |
Sbjct 906 TGACAGTTTCTTCATTGACGAAGAGAAGAAACTCGCGGTGGTTTTTAGTTCAAACAAA-T 964
Query 1590 TGAAAC-CT-CTA--CTGCTTATATCATTAGAGATA-ATAAATATTTGAAA-ACAGTGGA 1643
||| || | | | ||||| || ||| |||| | ||| ||| |||||| | ||||||
Sbjct 965 CAAAATGCTACAAAACAGCTTACATTATTGGAGA-AGATAGATACTTGAAAGA-AGTGGA 1022
Query 1644 TCTTG 1648
|||||
Sbjct 1023 TCTTG 1027
> AT1G59680.1 | Symbols: EDA1 | F-box associated ubiquitination
effector family protein | chr1:21933021-21934216 FORWARD LENGTH=795
Length=795
Score = 80.5 bits (43), Expect = 5e-14
Identities = 211/287 (74%), Gaps = 31/287 (11%)
Strand=Plus/Plus
Query 1301 CAGAGAGATTTGGACAG-ATTCTTCCTCTGCC-GTTTAAACATTAT-AT-TTG-GACTCT 1355
|||| |||||||||| | | |||||||||||| ||| | | |||| || | ||||||
Sbjct 350 CAGAAAGATTTGGACCGCA-TCTTCCTCTGCCGGTTCACTC-TTATGATGACGTGACTCT 407
Query 1356 ATCTTGTGTCAAAGAAGAGAAACTCGCAGTCGCGGTGTTATGTTGGG-A-AA--ATACAT 1411
||||||||||| | ||||| | || | || |||||| |||| | || | |||
Sbjct 408 ATCTTGTGTCAGACAAGAG---C-AGC--TTGCTTTGTTAT-ATGGGAACAACGAGACAG 460
Query 1412 ATG--TGA-TAGAGATATGGATGACAATTAAGATTGATCCTAATGCCGCGTCGTGGAGCA 1468
||| | | ||||||| ||||| |||| | |||||||||| ||||| | |||||||||||
Sbjct 461 ATGATTCATTAGAGATTTGGATTACAAATCAGATTGATCCCAATGCAGTGTCGTGGAGCA 520
Query 1469 AATTCTT-AAGAGTTGATAGGAAACCACCCATTGGTCTTGGCTTTGTG-TTTGCTAATCG 1526
||| || || ||| |||| ||||| | |||||| || | | || | |||
Sbjct 521 TATTTTTGAA-AGTGGATATCAAACCGCTTATTGGT-TT-TCCAAAAGACTT-C-GATCC 575
Query 1527 TGATGACAGTTTCTTCATTGACGAAGAGAAGAAAGTCGCCGTGGTTT 1573
|| | || |||||||||||||||||||||||||||| |||||||
Sbjct 576 TG--G-GAGCTTCTTCATTGACGAAGAGAAGAAAGTCGTTGTGGTTT 619
> AT5G36730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14436317-14437549 FORWARD LENGTH=1233
Length=1233
Score = 73.1 bits (39), Expect = 9e-12
Identities = 47/51 (92%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1285 TGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTTT 1335
||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTT 765
> AT5G36820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:14495617-14496849 FORWARD LENGTH=1233
Length=1233
Score = 73.1 bits (39), Expect = 9e-12
Identities = 47/51 (92%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1285 TGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTTT 1335
||||||||||||||||||||||||||||||| | ||||| ||||||||||
Sbjct 715 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTT 765
> AT3G16880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5766733-5767830 FORWARD LENGTH=1098
Length=1098
Score = 73.1 bits (39), Expect = 9e-12
Identities = 45/48 (94%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1287 TTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTT 1334
||||||||||||||||||||||||||||| || ||| |||||||||||
Sbjct 657 TTTTGATTTTACAACAGAGAGATTTGGACCGACTCTGCCTCTGCCGTT 704
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 65.8 bits (35), Expect = 1e-09
Identities = 51/58 (88%), Gaps = 4/58 (7%)
Strand=Plus/Plus
Query 1280 TACTGTGTTTTGATTTTACAACAGAGAGATTTGGACAGAT-TCTT-CCTCTGCCGTTT 1335
|||| ||||||||||||||||||||||||||||||| | | | || ||||||| ||||
Sbjct 735 TACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCG-TGT-TTGCCTCTGCTGTTT 790
> AT3G16820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5728016-5729174 REVERSE LENGTH=942
Length=942
Score = 62.1 bits (33), Expect = 2e-08
Identities = 45/51 (88%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 1285 TGTTTTGATTTTACAACAGAGAGATTTGGACAGATTCTTCCTCTGCCGTTT 1335
||||||||||||||||||||||||||||||| | ||| ||||||| |||
Sbjct 505 TGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTACTCTGCCTTTT 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89055766830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5