BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913035
Length=999
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32270.1 | Symbols: ATSYP24, SYP24 | syntaxin, putative | ch... 1221 0.0
> AT1G32270.1 | Symbols: ATSYP24, SYP24 | syntaxin, putative |
chr1:11642593-11644962 FORWARD LENGTH=1251
Length=1251
Score = 1221 bits (661), Expect = 0.0
Identities = 899/1011 (89%), Gaps = 27/1011 (3%)
Strand=Plus/Plus
Query 7 AGATCCAACGACGTGAAATTTCAAGTCTATGACGCAGAGCTGACACATTTCAATCTCGAA 66
||||||||||| |||||||| |||||||| ||||| ||||||||||||||| ||||||||
Sbjct 7 AGATCCAACGATGTGAAATTCCAAGTCTACGACGCTGAGCTGACACATTTCGATCTCGAA 66
Query 67 AGCAACAACAACCTCCATTACAATCTCACTTTGAGTCTCTCCATCCGGAACTCGAAGAGT 126
|||||||| |||||||| |||| |||| |||||| |||||||||||| ||||||||||||
Sbjct 67 AGCAACAATAACCTCCAGTACAGTCTCTCTTTGAATCTCTCCATCCGAAACTCGAAGAGT 126
Query 127 AGTATCGAAATCCATTCCGACCA-GTTTGAAGCAAACGTTTACTACATGAATCAGTGGTT 185
||||||| |||||||| ||| | ||||||||||| ||||||||||||||||||| ||||
Sbjct 127 AGTATCGGAATCCATTACGA-TAGGTTTGAAGCAACCGTTTACTACATGAATCAGCGGTT 185
Query 186 AGGAGCGGTTCCCATGCCGTCGTTCTA-CTTGGGAAGCAAAAACACGACACTTCTCAGAG 244
|||||| ||||||||||||| |||||| ||| |||||||| ||||||| ||||||||||
Sbjct 186 AGGAGCTGTTCCCATGCCGTTGTTCTACCTT-GGAAGCAAGAACACGATGCTTCTCAGAG 244
Query 245 CATTGTTTGAAGGCAAAACTCCAGTTTTACTAGACGGTGATGGACGCAAAAAGTTTGAAG 304
|||||||||||||| |||||| |||||||||| | ||| ||| |||||||||||||||||
Sbjct 245 CATTGTTTGAAGGCCAAACTCTAGTTTTACTAAAGGGTAATGAACGCAAAAAGTTTGAAG 304
Query 305 ATGATCGGAACACTGGGGTTTACAGAATCGACGTGAAGCTGAGTATTAATTTTAGGGTTA 364
|||||| ||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 305 ATGATCAGAAGACTGGTGTTTATAGAATTGACGTGAAGCTGAGTATTAATTTTAGGGTTA 364
Query 365 TGGTTTTGCATTTAGTAACGTGGCCGATGAAACCAATTGTACGTTGTTATCTCAAAG-TA 423
|||||||||||||||| |||||||||||||||||| |||| |||||| |||| ||| ||
Sbjct 365 TGGTTTTGCATTTAGTCACGTGGCCGATGAAACCAGTTGTTCGTTGTCATCT-TAAGATA 423
Query 424 CCATTAGCATTAGGTTCCTCTAACTCAA-C--AGGACACAAGACAA-GATTACATATTGG 479
|||||||||||||||||||||||||||| | ||| ||||||| || | |||| ||||||
Sbjct 424 CCATTAGCATTAGGTTCCTCTAACTCAACCGGAGGGCACAAGAAAATG-TTACTTATTGG 482
Query 480 GCAATTGGTAAAAGATACTTCTGCAAAACTTAGGGAAGCTAGTGAAACCGATCATGGTAA 539
||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 483 TCAACTGGTAAAAGATACTTCTGCAAATCTTAGGGAAGCTAGTGAAACCGATCATCGTCG 542
Query 540 AGATGTTGCTCAAAGTAAGAAGATTGCAGATGCTAAACTTGCAAAGGATTTTGAAGCAGT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AGATGTTGCTCAAAGTAAGAAGATTGCAGATGCTAAACTTGCAAAGGATTTTGAAGCAGC 602
Query 600 GTTGAAAGAGTATCAGAAAGCACAGCATATTGCAGCTGAAAGAGAAACTTCTTACACTCC 659
||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| | |||
Sbjct 603 GTTGAAAGAGTTTCAGAAAGCACAGCATATTACAGTTGAAAGAGAAACTTCTTATATTCC 662
Query 660 TTTTGATCCAAAAGCCAACCTTTCTTCA-G--AGGTAGAGATTGGCTATGATAGATCACA 716
|||||||||||||| | | |||||||| | ||||||| ||||||||||||||||||||
Sbjct 663 TTTTGATCCAAAAGGTAGCTTTTCTTCAAGTGAGGTAGACATTGGCTATGATAGATCACA 722
Query 717 AGAGCAGCGTGTCCTCATGGAATCTAG--G-CAAGAAGTTGTGTTGCTTGACAACGAAAT 773
||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 723 AGAGCAGCGTGTCCTCATGGAATCTAGAAGGCAAGAAATTGTGTTGCTTGACAACGAAAT 782
Query 774 TTCCTTCAACGAAGCG-GTGATTGAGGAAAGAGAACAGGGAATACAGGAAGTTGAGCAGC 832
|||||| |||||||| | ||| |||| ||| |||||||| |||||||||||| |||| |
Sbjct 783 TTCCTTAAACGAAGCACG-GATAGAGGCAAGGGAACAGGGGATACAGGAAGTTAAGCATC 841
Query 833 AAATCGGTGAAGTAAACGATATTTTCAAAGATCTTGCGGTGTTGGTTA-ACTATCAAGGA 891
||||| ||||||||| || || ||||||||||| |||||| |||| | || ||||||||
Sbjct 842 AAATCAGTGAAGTAATGGAGATGTTCAAAGATCTGGCGGTGATGGT-AGACCATCAAGGA 900
Query 892 GAC-ATA-ATCGATATAGGT-AGCCATATCGACAATGCACATTCAGCAACAGCTCAGGGA 948
|| || || ||||||| | || | ||||||||| || ||||||| |||||||||||
Sbjct 901 -ACGATCGAT-GATATAGATGAGA-AGATCGACAATTTACGTTCAGCAGCAGCTCAGGGA 957
Query 949 AAGTCCCATCTCGTGAAAGCCTCCAAGACACAACGATCAAACTCATCCCTG 999
|||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 958 AAGTCCCATCTCGTGAAAGCATCCAATACACAAGGATCAAACTCATCCCTG 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48928059178
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5