BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913042

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28350.1 | Symbols:  | Nucleotidylyl transferase superfamily...   104    6e-22


> AT1G28350.1 | Symbols:  | Nucleotidylyl transferase superfamily 
protein | chr1:9944036-9949800 FORWARD LENGTH=2554
Length=2554

 Score =  104 bits (56),  Expect = 6e-22
 Identities = 67/72 (93%), Gaps = 1/72 (1%)
 Strand=Plus/Plus

Query  20   CATTGTCAGAGATGGAGGCTCTTTCCATCAACGCACCAACTCCGGATTCTACTTTGCCCT  79
            ||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  74   CATCGTCAGAGATGGAGGCTCTTTCCATCAACGCACCAACTCAGGCTTCTACTTTGCCCT  133

Query  80   CCGGAGTA-AAA  90
            ||||| || |||
Sbjct  134  CCGGATTACAAA  145



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5