BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913045
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32340.1 | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663070-... 3114 0.0
> AT1G32340.1 | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663070-11666058
REVERSE LENGTH=2480
Length=2480
Score = 3114 bits (1686), Expect = 0.0
Identities = 1949/2073 (94%), Gaps = 30/2073 (1%)
Strand=Plus/Plus
Query 1 ATGAGACGAACACACGGAGGCAGTGGAAGAAATCACGACCGCCGCTACATCCGCCGCGAC 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 22 ATGAGAGGAACACACGGAGGCAGTGGAAGAAATCACGACCGCCGCTACATCCGCCGTGAC 81
Query 61 GCTGGGATTGTGAATCCAATTAACGATCAT-----A-CACA--ATC-G---GAAGACACG 108
|||||||||||||||||| | ||||||||| | || | ||| | |||||||||
Sbjct 82 GCTGGGATTGTGAATCCAGTCAACGATCATCCAAAATCAGAGCATCAGAAAGAAGACACG 141
Query 109 ACTTCAACGGATTCATCATCT---GCAGCTTTTCCGTCTACTTCTCAGCCATTCCAAAAC 165
||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 142 ACTTCGACGGATTTATCATCTGCAGCAGCTTTTCCGTCTACTTCTCAGCCAATCCAAAAC 201
Query 166 CTCGATCATCCTACAAAACCTTCGAAA-TCTCACCGGAATCGGCGAAGCCGTGGATCGAA 224
||||||||| ||||||||||||| ||| |||||||||||||| || ||||||||||| ||
Sbjct 202 CTCGATCATTCTACAAAACCTTC-AAAGTCTCACCGGAATCGACGCAGCCGTGGATCAAA 260
Query 225 TTCAAAACCTCGTCCCGTGGAGAAATCGGAGGTGAATTTTGCTGAATCCGATGCTGTAGA 284
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 261 TTCAAAACCTCGTCCCGTGGAGAAACCGGAGGTGAATTTTGCTGAATCCGATGTTGTTGA 320
Query 285 TTGCTTAGCTGATGAATTCAGTAGCTTAAAGGTGAAACAGAGCTCAAATTC---GATTAC 341
|||||| ||||||||||| ||||| |||||||||||||||| || |||| || ||
Sbjct 321 TTGCTTGGCTGATGAATTGAGTAGGTTAAAGGTGAAACAGAATTCGCATTCGGTGAATAT 380
Query 342 GGAGGAGAAGTTTCATCACAGTTCTGGTGATCATTCGAATTGTGAGGAATTGGAGGTGAA 401
||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||
Sbjct 381 GGAGGAGAAGTTTCATCACAGTTCTAGTGATCATTCGAATTGTGAGGAATCGGAGTTAAA 440
Query 402 GAGAGCTGAAATTGAAGAAATTGCTGATGGTGTTGATGAGTATGAGAAGAATGAAGATAT 461
||||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 441 GAGAGCTGAAAGTGAAGAAATTGCTGATGGTGTTGATGAATATGAGACGAAGGAAGATAT 500
Query 462 TATGTTGACAATTCTGAAAGATTTGAC-ATCTAGTGTCATTGAGCCAGAGCTAACAGAGG 520
||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 501 TATGTTGACAATTCTGAAAGATTTG-CGATCTAGTGTCAGTGAGCCAGAGCTAACAGAGG 559
Query 521 AGCAACTAAAGATGAATGATCAATTGCAGGAAGATGAGCTTTTGGCATTGGGGTACATAT 580
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 560 AGCAACTAAAGATGAATGATCAATTACAGGAAGATGAGCTTTTGGCATTGGGGTACATAT 619
Query 581 ATGGAGGAAACATGTTCATCTTTGATCGGCATAAAGATATGCGATACTTTCAGGTTCATG 640
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 620 ATGGAGGAAACATGTTCATCTTTGATCGGTATAACGATATGCGATACTTTCAGGTTCATG 679
Query 641 TAAACGTTGAAGCTACTAGTGAATATAATATCTCTGCGAAGCTTAAGTTACAAGCGGATT 700
||||||||||||||||||||||||||| ||||||| | |||||||| |||||||| ||||
Sbjct 680 TAAACGTTGAAGCTACTAGTGAATATACTATCTCTACAAAGCTTAACTTACAAGCTGATT 739
Query 701 CAAGCAAAGAGTCAGAGGATTTCCTGTACTCATTCAAGGCGCAACACCTTCCGCCGATTG 760
||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 740 CAAGCAAAGAGTCAGAGGATTTCTTGTACTCTTTCAAGGCGCAACACCTTCCACCGATTG 799
Query 761 TGTTGACATGTTTATTACCAAATGCTTATCCAAGCCATTTACCGCCTTATTTCTTAATAA 820
|||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 800 TGTTGAAATGTTTATTACCAAAAGCTTATCCGAGCCACTTACCGCCTTATTTCTTAATAA 859
Query 821 GTGTTCAGTGGATGAATCCTGATAAGATTTCAAGTCTCTGCTC-AATGCTGGACTC-TAT 878
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| | |
Sbjct 860 GTGTTCAGTGGATGAATCCTGATAAGATTTCAAGTCTCTGCTCTAA-GCTGGACTCGT-T 917
Query 879 ATGGATG-GAACAGCCAGGGCAAGAAGTCTTGTACCTA-TGGACGGATTGGCTACAGAAC 936
||||| | |||||||||||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 918 ATGGA-GTGAACAGCCAGGGCAAGAAGTCTTGTACC-AGTGGACAGATTGGCTACAGAAC 975
Query 937 TCGTCAATTTCTCACCTTGGCTTTGATAAGGAGATTGTTCTTGGTCCTTATGGGGTTACA 996
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 976 TCGTCGATTTCTCATCTTGGTTTTGATAATGAGATTGTTCTTGGTCCTTATGGTGTTACA 1035
Query 997 TGTTCCAGAGATAAACGTGCTGTGTCTGGAAGTCGTTCCCCGGATTCAGATATTCCTTAT 1056
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1036 TGTTCCAGAGATAAGCGTGCTGTGTCTGGAAGTCGTTCTCCGGATTCAGATATTCCTTAT 1095
Query 1057 ATTAGGAGTTATGACGATGAGAAACGTCATGATAGCTTCCTTCAGAGCTTGCATGAGTGC 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 ATTAGGAGTTATGACGATGAGAAACGTCATGATAGCTTCCTTCAGAGCTTGCATGAGTGC 1155
Query 1117 TGTATATGTTTCACTGAGTCTGCAGGTATTGACTTTGTTAAGTTACCATGCCAGCATTTC 1176
|| ||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1156 TGCATATGCTTCTCTGAATCTGCAGGTATCGACTTTGTTAAGTTACCATGCCAGCATTTC 1215
Query 1177 TTTTGTTTGAAATGTATGAAGACCTATACAGATATACATGTCTCTGAAGGCACAGTTAAC 1236
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1216 TTTTGTTTGAAATGTATGAAGACCTATACAGACATACATGTCACTGAAGGCACAGTTAAC 1275
Query 1237 AAACTCAAGTGTCCAGACTCGAAATGTGGAGAAATTGTTCCGCCAGGTATATTGAAGAGA 1296
|| ||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1276 AAGCTCAAGTGTCCGGACTCGAAATGTGGAGAAACTGTTCCGCCAGGGATATTGAAGAGA 1335
Query 1297 TTGTTGGGCGAAGAAGCGTATGAGCGCTGGGAAACTCTTATGTTACAGAAAACACTGGAA 1356
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1336 TTGTTGGGCGATGAAGCGTATGAACGGTGGGAAACTCTTATGTTACAGAAAACACTGGAA 1395
Query 1357 TCCATGACTGACGTCGCTTACTGTCCTAGATGTGAAACCCCATGCATAGAGGACGAGGAA 1416
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1396 TCCATGACTGACGTTGCTTACTGTCCTAGATGTGAAACCCCTTGCATAGAGGACGAGGAA 1455
Query 1417 CAGCTTGCTTTATGCTTCAAATGCTACTTCAGTTTCTGTACGCTTTGTAAGGAAAAGAGA 1476
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1456 CAGCTTGCTTTATGCTTCAAATGCTACTTCAGTTTCTGTACACTTTGTAAGGAAAAGAGA 1515
Query 1477 CATGTGGGTGTGGCTTGCATGAGTCCGGAACTTAGGCTTCAAATCTTGCAGGAGCGTCAG 1536
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1516 CATGTGGGTGTGGCTTGCATGAGCCCGGAACTTAGGCTTCAAATCTTGCAGGAGCGTCAA 1575
Query 1537 GGTTCTTCTCGTCTTGGAGAGGAACAAAGGCGGAAAGAAAAAGAAATGATCAATGAGATT 1596
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1576 GATTCTTCTCGTCTTGGAGAGGAACAAAGGCGGAAAGAGAAAGAAATGATCAATGAGATT 1635
Query 1597 ATGAGTGTGAAGGTGATAATGAAAAGCGCTAAACAATGTCCGTCGTGCAAAATAGCCATC 1656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 ATGAGTGTGAAGGTGATAATGAAAAGCGCTAAACAATGTCCGTCGTGCAAAATAGCCATC 1695
Query 1657 TCAAGAACCGGAGGTTGTAACAAAATGGTCTGCAATAACTGTGGCCAATACTTTTGTTAC 1716
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1696 TCAAGAACCGGAGGTTGTAACAAAATGGTATGCAATAACTGTGGTCAATACTTTTGTTAC 1755
Query 1717 CGTTGCAACAAAGCTATCACTGGTTATGAACATTTCAGTGAGGGAACATGTGATCTGTTC 1776
||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1756 CGTTGCAACGAAGCTATCACTGGTTATGAACATTTCAGTGAGGGAAAATGTGAACTGTTC 1815
Query 1777 CCACAAGAGGCGATCCAAGAATGGAATGAGAGGATGAATGAGAGACAAGTCATTGGGCAA 1836
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1816 CCACAAGAGGCGATCCAAGAATGGAATGAGATGATGAATGAGAGACAAGTCATTGGACAG 1875
Query 1837 ATTCAAGCTCAACTGTTTGCACAACACGGTCAGTTCCCACAGCGCGGCCAGTTATGTCCT 1896
|||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 1876 ATTCAAGCGCAACTGTTTGCACAAGGCGGTCAGTTTCCACAGCGCGGTCAGTTATGTCCT 1935
Query 1897 AATTGCCGCCAGTTCAATGCAAAGGCGGGAAACAACAATCACTTGTTTTGCTGGGCATGT 1956
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1936 AATTGCCGCCAGTTCAATGGAAAGGCGGGAAACAACAATCACTTGTTTTGTTGGGCATGT 1995
Query 1957 CAAGCACATTTCTGTTATCTTTGTAAGAAAGTGGTGAAGAAATCTGCTCAGCATTATGGA 2016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996 CAAGCACATTTCTGTTATCTTTGTAAGAAAGTGGTGAAGAAATCTGCTCAGCATTATGGA 2055
Query 2017 CCAAAGGGTTGCAAGCAACACACAGATGGGTAA 2049
|||||||| |||||||| |||||||||||||||
Sbjct 2056 CCAAAGGGCTGCAAGCAGCACACAGATGGGTAA 2088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101555702535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5