BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913052
Length=2379
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 3469 0.0
AT1G32410.1 | Symbols: | Vacuolar protein sorting 55 (VPS55) f... 161 2e-38
AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor 18... 60.2 9e-08
> AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr1:11695611-11697896 FORWARD LENGTH=2286
Length=2286
Score = 3469 bits (1878), Expect = 0.0
Identities = 2157/2292 (94%), Gaps = 18/2292 (1%)
Strand=Plus/Plus
Query 100 ATGCGAGCACTCCGTGTTAAGAAAGTTTGTGGCTTTCTCTCGAAACTATCTCTCAGTTCT 159
|||||||| ||| |||| ||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1 ATGCGAGCTCTCTGTGTAAAGAAAGTTTGTGGCTTTCTCTCAAAATTATCTCTCAGATCT 60
Query 160 TCGATATCTTGTCGTCGATTCTAT---G----GAT--CGAATTATGGAAGCCATCGTCGT 210
|| |||||||||||||||| |||| | ||| ||||||| |||||| |||||||
Sbjct 61 TCAATATCTTGTCGTCGATACTATGGAGATAAGATACCGAATTACGGAAGCTATCGTCGA 120
Query 211 GGTTTCTCTAATGAAGAAGCTCTTATTCTTCGTCGCTTATCTGAGGGAGGTCTTGTACAT 270
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 121 GGTTTCTCTAATGAAGAAGCTCTTATACTTCGTCGTTTATCTGAGGGAGGTCTTGTACAT 180
Query 271 GCACGCCACTTGCTCGACAAAATTCCTCAGAGAGGAAGTATCAGCCGTGTCATTTACTGG 330
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 181 GCACGCCACTTGCTCGACAAAATTCCTCAGAGAGGAAGTATCAACCGTGTTGTTTACTGG 240
Query 331 ACTTCGCTTCTTACCAAGTACGCGAAAGCTGGATACTTGGACGAAGCAAGGGTTTTGTTT 390
||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 241 ACTTCGCTTCTTAGTAAGTACGCGAAAACTGGATACTTGGATGAAGCAAGGGTTTTGTTT 300
Query 391 GAAGTAATGCCGGAGAGGAATATCGTGACTTGCAATGCGATGTTGACGGGTTTTGTCAAA 450
||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| |||
Sbjct 301 GAAGTAATGCCTGAGAGGAATATCGTTACTTGTAATGCGATGTTGACGGGTTATGTTAAA 360
Query 451 TGTAGGAGATTGAATGAGGCTTGGACATTGTTTCGGGAAATGCCGAAGAACGTTGTTTCT 510
||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 361 TGTAGGAGAATGAATGAGGCTTGGACATTGTTTAGGGAAATGCCGAAGAATGTTGTTTCT 420
Query 511 TGGACTGTGATGCTTACTGCGCTTTGTGACGATGGAAGGAGTGATGATGCAGTCGAGTTG 570
||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||
Sbjct 421 TGGACTGTGATGCTTACTGCGCTATGTGACGACGGAAGGAGTGAAGATGCAGTTGAGTTG 480
Query 571 TTTGATGAAATGCCTGAGAGAAATGTGGTTTCGTGGAACACGTTGGTTACGGGTTTGATT 630
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 481 TTCGATGAAATGCCTGAGAGAAATGTGGTTTCGTGGAACACTTTGGTAACGGGTTTGATT 540
Query 631 AGGAATGGGGAAACGGAGAAGGCGAAACAGGTGTTTGATGCTATGCCTAGCCGAGATGTT 690
|||||||| || | ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 541 AGGAATGGTGATATGGAGAAGGCAAAACAGGTGTTTGATGCTATGCCTAGTAGAGATGTT 600
Query 691 GTGTCGTGGAACGCTATGATTAAAGGGTATATTGAGAATGGTGGAATGGAGGAGGCGAAA 750
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 601 GTGTCGTGGAACGCTATGATTAAAGGGTATATTGAGAATGATGGGATGGAGGAAGCGAAA 660
Query 751 CTATTGTTTGAGAATATGAGTGAGAAGAATGTAGTTACTTGGACGAGTATGGTGTATGGT 810
|||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 CTATTGTTTGGGGATATGAGTGAGAAGAATGTAGTTACTTGGACGAGTATGGTATATGGT 720
Query 811 TATTGTAGGTATGGAGATGTTCATGAAGCTTATAGATTGTTCTGTGAAATGCCTGAGAGA 870
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 721 TATTGTAGGTATGGAGATGTTCGTGAAGCTTATAGATTGTTCTGTGAAATGCCGGAGAGA 780
Query 871 AATGTCGTTTCTTGGACCGCTATGATTAGTGGGTTTGCTTGGAATGAGTTCTATAGAGAA 930
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 AATATCGTTTCTTGGACCGCTATGATTAGTGGGTTTGCTTGGAATGAGTTGTATAGAGAA 840
Query 931 GCATTGATGCTTTTTCTTGAAATGAAGAAGGATGTTGATGCAATATCACCAAATGGTGAG 990
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 841 GCGTTGATGCTTTTTCTTGAAATGAAGAAGGATGTTGATGCAGTATCACCAAATGGTGAG 900
Query 991 ACTCTCATCTCTCTTGCTTATGCTTGTGGTGGTCTTAGTGTTGGATTTCGTCGTCTCGGC 1050
|||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| ||
Sbjct 901 ACTCTCATTTCTCTTGCTTATGCTTGTGGTGGTCTTGGTGTTGAATTTCGTCGTCTTGGT 960
Query 1051 GAGCAATTGCACGCACAAGTTATATCTAACGGTTGGGAAAGTGTGGATCATGATGGAAGG 1110
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 961 GAGCAATTGCACGCACAAGTTATATCTAACGGTTGGGAAACTGTGGATCACGATGGAAGG 1020
Query 1111 TTGGCGAAAAGTCTTGTTCATATGTATGCATCATTTGGCTTGATTGCTTCAGCGCAGTCT 1170
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1021 TTGGCGAAAAGTCTTGTTCATATGTATGCATCATCTGGCTTGATTGCTTCAGCTCAATCT 1080
Query 1171 CTGCTCAACGAAAGCTTTGATTTGCAGTCTTGTAACATTATTATC-AGCGCTTATCTAAA 1229
||||| || |||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 1081 CTGCTTAATGAAAGCTTTGATTTGCAGTCTTGTAACATTATTATCAACCG-TTATCTAAA 1139
Query 1230 GAATGGGGATTTTGAGCGAGCTGAAACTCTGTTCAG-GAGAGTCGAGAGCTTACACGACA 1288
||| |||||||| ||||||||||||||||||||| | ||||||| |||||||||| ||||
Sbjct 1140 GAACGGGGATTTGGAGCGAGCTGAAACTCTGTTC-GAGAGAGTCAAGAGCTTACATGACA 1198
Query 1289 AAGTATCTTGGACATCGATGATCGATGGATATCTAGATGCGGGTGATGTATCGAGGGCCT 1348
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1199 AAGTATCTTGGACATCGATGATCGATGGATATCTAGAAGCGGGTGATGTATCCAGGGCCT 1258
Query 1349 TTGATCTGTTTCAGAAACTTCACGACAAAGATGGGGTTACATGGACTGTTATGATCTCAG 1408
||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1259 TTGGTCTGTTTCAGAAACTTCACGACAAAGACGGGGTTACATGGACGGTTATGATCTCAG 1318
Query 1409 GTCTTGTCCGAAACGAGCTTTTTGCAGAAGCTGCATCCCTACTGTCAGATATGGTGAGAT 1468
||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1319 GTCTTGTCCAAAACGAACTTTTTGCAGAAGCTGCATCCTTACTGTCAGATATGGTGAGAT 1378
Query 1469 GTGGTCTGAAACCATTGAACTCAACTTACTCTGTTCTTCTTAGTTCTGCGGGAGCCACTT 1528
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1379 GTGGTCTGAAACCGTTGAACTCGACTTACTCTGTTCTTCTTAGTTCTGCGGGAGCCACAT 1438
Query 1529 CGAATCTTGATCAAGGGAAGCATTTACACTGCGTGATTGCAAAAACCACAGCTTGCTATG 1588
||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1439 CGAATCTCGATCAAGGGAAGCATATACACTGCGTGATTGCAAAAACCACGGCTTGCTATG 1498
Query 1589 ATCCTGATCTCATCCTTCAAAACTCTCTTGTCTCTATGTATGCCAAATGTGGAGCCATAG 1648
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1499 ATCCTGATCTCATCCTTCAAAACTCTCTTGTCTCTATGTACGCCAAATGCGGAGCCATAG 1558
Query 1649 ACGATGCTTATGAGATATTCTCAAAGATGGTCCGGAAAGATACAGTTTCATGGAACTCTG 1708
| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1559 AGGATGCTTATGAGATATTCGCAAAGATGGTTCAGAAAGATACAGTTTCATGGAACTCTA 1618
Query 1709 TGATCATAGGGTTATCGCATCACGGCTTAGCGGATAAAGCTTTGAAA-CTGTTCAAAGAG 1767
||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1619 TGATCATGGGGTTATCGCATCACGGCTTAGCGGATAAAGCCTT-AAATCTGTTCAAAGAG 1677
Query 1768 ATGCTTGATTCGGGGATGAAACCGAACTCTGTAACTTTTCTCGCAGTCCTCTCAGCTTGT 1827
|||||||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 1678 ATGCTTGATTCGGGGAAGAAACCGAACTCTGTAACGTTTCTCGGAGTCCTCTCTGCTTGT 1737
Query 1828 AGCCACTCTGGACTCATCACCAGAGGTTTAGAACTATTCAAAGCGATGAAGGAAACCTAT 1887
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1738 AGTCACTCTGGACTCATCACCAGAGGTTTAGAACTATTCAAAGCGATGAAAGAAACCTAT 1797
Query 1888 TCGATCCAACCCGGAGTCGAGCATTACATTTCGATGATAGACCTTTTAGGCAGAGCCGGA 1947
|||||||| |||||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1798 TCGATCCAGCCCGGAATCGACCATTACATCTCGATGATAGACCTTTTAGGCAGAGCCGGA 1857
Query 1948 AAACTAAAAGAAGCAGAGGAATTCATCTCAGCCCTGCCTTTCACTCCAGACCATACAGTC 2007
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1858 AAACTAAAAGAAGCAGAGGAATTCATCTCAGCTCTGCCTTTCACTCCAGACCATACAGTC 1917
Query 2008 TACGGCGCATTGTTAGGCTTATGCGGACTCAACTGGAGAGATAGAGATGCGGCAGGCATA 2067
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 1918 TACGGCGCATTGTTAGGCTTATGCGGACTCAACTGGAGAGATAAAGATGCAGAAGGCATA 1977
Query 2068 GCGGAACGAGCTGCAATGCGGTTGCTAGAGCTTGACCCAGTAAATGCACCAGGACATGTG 2127
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1978 GCGGAACGAGCTGCAATGCGGTTGCTAGAGCTTGACCCAGTCAATGCACCAGGACATGTG 2037
Query 2128 GCGCTATGTAACATGTATGCCGGATTAGGGAGGCATGAGATGGAGAAAGAAATGAGGAAA 2187
|||||||| ||| ||||||| ||| ||||||||||||| |||||||| |||||||| |||
Sbjct 2038 GCGCTATGCAACGTGTATGCGGGACTAGGGAGGCATGATATGGAGAAGGAAATGAGAAAA 2097
Query 2188 GAGATGGGAATAAAAGGAGTGAAGAAGACACCAGGATGTAGTTGGATTGTGGTAAATGGA 2247
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2098 GAGATGGGAATAAAAGGAGTGAAGAAGACACCAGGATGTAGTTGGGTTGTGGTTAATGGA 2157
Query 2248 AGAGCTAATGTGTTTCTCTCTGGTGATAAGTCTGCAAGTGAAGCTGCTCAGATGGTTTTG 2307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 AGAGCTAATGTGTTTCTCTCTGGTGATAAGTCTGCAAGTGAAGCTGCTCAGATGGTTTTG 2217
Query 2308 CCAATCTTTTGTGGTAATGAAATGCTTGAGGAGGAAGAAGAGAAACCGTTGAGTCTATTA 2367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218 CCAATCTTTTGTGGTAATGAAATGCTTGAGGAGGAAGAAGAGAAACCGTTGAGTCTAT-- 2275
Query 2368 TGCCATTGCTGA 2379
|||||||||||
Sbjct 2276 -GCCATTGCTGA 2286
> AT1G32410.1 | Symbols: | Vacuolar protein sorting 55 (VPS55)
family protein | chr1:11693832-11695566 FORWARD LENGTH=795
Length=795
Score = 161 bits (87), Expect = 2e-38
Identities = 95/99 (96%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGACGTACCTGGATACCTGCGCACTTGTTTGGATATGGGGAAGATAGCTTTCTTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 ATGGCAGACGTACCTGGATACCTGCGCACTTGTTTGGATATGGGGAAGATAGCTTTCTTA 163
Query 61 GCGATCCTAGTATCGACAGGGATCGTGTTGCAGATTCTG 99
|| ||||| ||||| |||||||| |||||||||||||||
Sbjct 164 GCAATCCTTGTATCTACAGGGATTGTGTTGCAGATTCTG 202
> AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor
18 | chr5:6352771-6354828 REVERSE LENGTH=2058
Length=2058
Score = 60.2 bits (32), Expect = 9e-08
Identities = 40/44 (91%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 566 AGTTGTTTGATGAAATGCCTGAGAGAAATGTGGTTTCGTGGAAC 609
||||||||||||||||||||||||||||| | ||| | ||||||
Sbjct 686 AGTTGTTTGATGAAATGCCTGAGAGAAATTTAGTTACTTGGAAC 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118121882385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5