BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913052 Length=2379 Score E Sequences producing significant alignments: (Bits) Value AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 3469 0.0 AT1G32410.1 | Symbols: | Vacuolar protein sorting 55 (VPS55) f... 161 2e-38 AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor 18... 60.2 9e-08 > AT1G32415.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:11695611-11697896 FORWARD LENGTH=2286 Length=2286 Score = 3469 bits (1878), Expect = 0.0 Identities = 2157/2292 (94%), Gaps = 18/2292 (1%) Strand=Plus/Plus Query 100 ATGCGAGCACTCCGTGTTAAGAAAGTTTGTGGCTTTCTCTCGAAACTATCTCTCAGTTCT 159 |||||||| ||| |||| ||||||||||||||||||||||| ||| |||||||||| ||| Sbjct 1 ATGCGAGCTCTCTGTGTAAAGAAAGTTTGTGGCTTTCTCTCAAAATTATCTCTCAGATCT 60 Query 160 TCGATATCTTGTCGTCGATTCTAT---G----GAT--CGAATTATGGAAGCCATCGTCGT 210 || |||||||||||||||| |||| | ||| ||||||| |||||| ||||||| Sbjct 61 TCAATATCTTGTCGTCGATACTATGGAGATAAGATACCGAATTACGGAAGCTATCGTCGA 120 Query 211 GGTTTCTCTAATGAAGAAGCTCTTATTCTTCGTCGCTTATCTGAGGGAGGTCTTGTACAT 270 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 121 GGTTTCTCTAATGAAGAAGCTCTTATACTTCGTCGTTTATCTGAGGGAGGTCTTGTACAT 180 Query 271 GCACGCCACTTGCTCGACAAAATTCCTCAGAGAGGAAGTATCAGCCGTGTCATTTACTGG 330 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 181 GCACGCCACTTGCTCGACAAAATTCCTCAGAGAGGAAGTATCAACCGTGTTGTTTACTGG 240 Query 331 ACTTCGCTTCTTACCAAGTACGCGAAAGCTGGATACTTGGACGAAGCAAGGGTTTTGTTT 390 ||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 241 ACTTCGCTTCTTAGTAAGTACGCGAAAACTGGATACTTGGATGAAGCAAGGGTTTTGTTT 300 Query 391 GAAGTAATGCCGGAGAGGAATATCGTGACTTGCAATGCGATGTTGACGGGTTTTGTCAAA 450 ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||| ||| Sbjct 301 GAAGTAATGCCTGAGAGGAATATCGTTACTTGTAATGCGATGTTGACGGGTTATGTTAAA 360 Query 451 TGTAGGAGATTGAATGAGGCTTGGACATTGTTTCGGGAAATGCCGAAGAACGTTGTTTCT 510 ||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 361 TGTAGGAGAATGAATGAGGCTTGGACATTGTTTAGGGAAATGCCGAAGAATGTTGTTTCT 420 Query 511 TGGACTGTGATGCTTACTGCGCTTTGTGACGATGGAAGGAGTGATGATGCAGTCGAGTTG 570 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||| Sbjct 421 TGGACTGTGATGCTTACTGCGCTATGTGACGACGGAAGGAGTGAAGATGCAGTTGAGTTG 480 Query 571 TTTGATGAAATGCCTGAGAGAAATGTGGTTTCGTGGAACACGTTGGTTACGGGTTTGATT 630 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 481 TTCGATGAAATGCCTGAGAGAAATGTGGTTTCGTGGAACACTTTGGTAACGGGTTTGATT 540 Query 631 AGGAATGGGGAAACGGAGAAGGCGAAACAGGTGTTTGATGCTATGCCTAGCCGAGATGTT 690 |||||||| || | ||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 541 AGGAATGGTGATATGGAGAAGGCAAAACAGGTGTTTGATGCTATGCCTAGTAGAGATGTT 600 Query 691 GTGTCGTGGAACGCTATGATTAAAGGGTATATTGAGAATGGTGGAATGGAGGAGGCGAAA 750 |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||| Sbjct 601 GTGTCGTGGAACGCTATGATTAAAGGGTATATTGAGAATGATGGGATGGAGGAAGCGAAA 660 Query 751 CTATTGTTTGAGAATATGAGTGAGAAGAATGTAGTTACTTGGACGAGTATGGTGTATGGT 810 |||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 661 CTATTGTTTGGGGATATGAGTGAGAAGAATGTAGTTACTTGGACGAGTATGGTATATGGT 720 Query 811 TATTGTAGGTATGGAGATGTTCATGAAGCTTATAGATTGTTCTGTGAAATGCCTGAGAGA 870 |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 721 TATTGTAGGTATGGAGATGTTCGTGAAGCTTATAGATTGTTCTGTGAAATGCCGGAGAGA 780 Query 871 AATGTCGTTTCTTGGACCGCTATGATTAGTGGGTTTGCTTGGAATGAGTTCTATAGAGAA 930 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 781 AATATCGTTTCTTGGACCGCTATGATTAGTGGGTTTGCTTGGAATGAGTTGTATAGAGAA 840 Query 931 GCATTGATGCTTTTTCTTGAAATGAAGAAGGATGTTGATGCAATATCACCAAATGGTGAG 990 || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 841 GCGTTGATGCTTTTTCTTGAAATGAAGAAGGATGTTGATGCAGTATCACCAAATGGTGAG 900 Query 991 ACTCTCATCTCTCTTGCTTATGCTTGTGGTGGTCTTAGTGTTGGATTTCGTCGTCTCGGC 1050 |||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| || Sbjct 901 ACTCTCATTTCTCTTGCTTATGCTTGTGGTGGTCTTGGTGTTGAATTTCGTCGTCTTGGT 960 Query 1051 GAGCAATTGCACGCACAAGTTATATCTAACGGTTGGGAAAGTGTGGATCATGATGGAAGG 1110 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 961 GAGCAATTGCACGCACAAGTTATATCTAACGGTTGGGAAACTGTGGATCACGATGGAAGG 1020 Query 1111 TTGGCGAAAAGTCTTGTTCATATGTATGCATCATTTGGCTTGATTGCTTCAGCGCAGTCT 1170 |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| Sbjct 1021 TTGGCGAAAAGTCTTGTTCATATGTATGCATCATCTGGCTTGATTGCTTCAGCTCAATCT 1080 Query 1171 CTGCTCAACGAAAGCTTTGATTTGCAGTCTTGTAACATTATTATC-AGCGCTTATCTAAA 1229 ||||| || |||||||||||||||||||||||||||||||||||| | || ||||||||| Sbjct 1081 CTGCTTAATGAAAGCTTTGATTTGCAGTCTTGTAACATTATTATCAACCG-TTATCTAAA 1139 Query 1230 GAATGGGGATTTTGAGCGAGCTGAAACTCTGTTCAG-GAGAGTCGAGAGCTTACACGACA 1288 ||| |||||||| ||||||||||||||||||||| | ||||||| |||||||||| |||| Sbjct 1140 GAACGGGGATTTGGAGCGAGCTGAAACTCTGTTC-GAGAGAGTCAAGAGCTTACATGACA 1198 Query 1289 AAGTATCTTGGACATCGATGATCGATGGATATCTAGATGCGGGTGATGTATCGAGGGCCT 1348 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1199 AAGTATCTTGGACATCGATGATCGATGGATATCTAGAAGCGGGTGATGTATCCAGGGCCT 1258 Query 1349 TTGATCTGTTTCAGAAACTTCACGACAAAGATGGGGTTACATGGACTGTTATGATCTCAG 1408 ||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1259 TTGGTCTGTTTCAGAAACTTCACGACAAAGACGGGGTTACATGGACGGTTATGATCTCAG 1318 Query 1409 GTCTTGTCCGAAACGAGCTTTTTGCAGAAGCTGCATCCCTACTGTCAGATATGGTGAGAT 1468 ||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1319 GTCTTGTCCAAAACGAACTTTTTGCAGAAGCTGCATCCTTACTGTCAGATATGGTGAGAT 1378 Query 1469 GTGGTCTGAAACCATTGAACTCAACTTACTCTGTTCTTCTTAGTTCTGCGGGAGCCACTT 1528 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 1379 GTGGTCTGAAACCGTTGAACTCGACTTACTCTGTTCTTCTTAGTTCTGCGGGAGCCACAT 1438 Query 1529 CGAATCTTGATCAAGGGAAGCATTTACACTGCGTGATTGCAAAAACCACAGCTTGCTATG 1588 ||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1439 CGAATCTCGATCAAGGGAAGCATATACACTGCGTGATTGCAAAAACCACGGCTTGCTATG 1498 Query 1589 ATCCTGATCTCATCCTTCAAAACTCTCTTGTCTCTATGTATGCCAAATGTGGAGCCATAG 1648 |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| Sbjct 1499 ATCCTGATCTCATCCTTCAAAACTCTCTTGTCTCTATGTACGCCAAATGCGGAGCCATAG 1558 Query 1649 ACGATGCTTATGAGATATTCTCAAAGATGGTCCGGAAAGATACAGTTTCATGGAACTCTG 1708 | |||||||||||||||||| |||||||||| | ||||||||||||||||||||||||| Sbjct 1559 AGGATGCTTATGAGATATTCGCAAAGATGGTTCAGAAAGATACAGTTTCATGGAACTCTA 1618 Query 1709 TGATCATAGGGTTATCGCATCACGGCTTAGCGGATAAAGCTTTGAAA-CTGTTCAAAGAG 1767 ||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 1619 TGATCATGGGGTTATCGCATCACGGCTTAGCGGATAAAGCCTT-AAATCTGTTCAAAGAG 1677 Query 1768 ATGCTTGATTCGGGGATGAAACCGAACTCTGTAACTTTTCTCGCAGTCCTCTCAGCTTGT 1827 |||||||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||| Sbjct 1678 ATGCTTGATTCGGGGAAGAAACCGAACTCTGTAACGTTTCTCGGAGTCCTCTCTGCTTGT 1737 Query 1828 AGCCACTCTGGACTCATCACCAGAGGTTTAGAACTATTCAAAGCGATGAAGGAAACCTAT 1887 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1738 AGTCACTCTGGACTCATCACCAGAGGTTTAGAACTATTCAAAGCGATGAAAGAAACCTAT 1797 Query 1888 TCGATCCAACCCGGAGTCGAGCATTACATTTCGATGATAGACCTTTTAGGCAGAGCCGGA 1947 |||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1798 TCGATCCAGCCCGGAATCGACCATTACATCTCGATGATAGACCTTTTAGGCAGAGCCGGA 1857 Query 1948 AAACTAAAAGAAGCAGAGGAATTCATCTCAGCCCTGCCTTTCACTCCAGACCATACAGTC 2007 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1858 AAACTAAAAGAAGCAGAGGAATTCATCTCAGCTCTGCCTTTCACTCCAGACCATACAGTC 1917 Query 2008 TACGGCGCATTGTTAGGCTTATGCGGACTCAACTGGAGAGATAGAGATGCGGCAGGCATA 2067 ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| Sbjct 1918 TACGGCGCATTGTTAGGCTTATGCGGACTCAACTGGAGAGATAAAGATGCAGAAGGCATA 1977 Query 2068 GCGGAACGAGCTGCAATGCGGTTGCTAGAGCTTGACCCAGTAAATGCACCAGGACATGTG 2127 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1978 GCGGAACGAGCTGCAATGCGGTTGCTAGAGCTTGACCCAGTCAATGCACCAGGACATGTG 2037 Query 2128 GCGCTATGTAACATGTATGCCGGATTAGGGAGGCATGAGATGGAGAAAGAAATGAGGAAA 2187 |||||||| ||| ||||||| ||| ||||||||||||| |||||||| |||||||| ||| Sbjct 2038 GCGCTATGCAACGTGTATGCGGGACTAGGGAGGCATGATATGGAGAAGGAAATGAGAAAA 2097 Query 2188 GAGATGGGAATAAAAGGAGTGAAGAAGACACCAGGATGTAGTTGGATTGTGGTAAATGGA 2247 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct 2098 GAGATGGGAATAAAAGGAGTGAAGAAGACACCAGGATGTAGTTGGGTTGTGGTTAATGGA 2157 Query 2248 AGAGCTAATGTGTTTCTCTCTGGTGATAAGTCTGCAAGTGAAGCTGCTCAGATGGTTTTG 2307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2158 AGAGCTAATGTGTTTCTCTCTGGTGATAAGTCTGCAAGTGAAGCTGCTCAGATGGTTTTG 2217 Query 2308 CCAATCTTTTGTGGTAATGAAATGCTTGAGGAGGAAGAAGAGAAACCGTTGAGTCTATTA 2367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2218 CCAATCTTTTGTGGTAATGAAATGCTTGAGGAGGAAGAAGAGAAACCGTTGAGTCTAT-- 2275 Query 2368 TGCCATTGCTGA 2379 ||||||||||| Sbjct 2276 -GCCATTGCTGA 2286 > AT1G32410.1 | Symbols: | Vacuolar protein sorting 55 (VPS55) family protein | chr1:11693832-11695566 FORWARD LENGTH=795 Length=795 Score = 161 bits (87), Expect = 2e-38 Identities = 95/99 (96%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 1 ATGGCAGACGTACCTGGATACCTGCGCACTTGTTTGGATATGGGGAAGATAGCTTTCTTA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 104 ATGGCAGACGTACCTGGATACCTGCGCACTTGTTTGGATATGGGGAAGATAGCTTTCTTA 163 Query 61 GCGATCCTAGTATCGACAGGGATCGTGTTGCAGATTCTG 99 || ||||| ||||| |||||||| ||||||||||||||| Sbjct 164 GCAATCCTTGTATCTACAGGGATTGTGTTGCAGATTCTG 202 > AT5G19020.1 | Symbols: MEF18 | mitochondrial editing factor 18 | chr5:6352771-6354828 REVERSE LENGTH=2058 Length=2058 Score = 60.2 bits (32), Expect = 9e-08 Identities = 40/44 (91%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 566 AGTTGTTTGATGAAATGCCTGAGAGAAATGTGGTTTCGTGGAAC 609 ||||||||||||||||||||||||||||| | ||| | |||||| Sbjct 686 AGTTGTTTGATGAAATGCCTGAGAGAAATTTAGTTACTTGGAAC 729 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 118121882385 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5