BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913058
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32430.1 | Symbols: | F-box and associated interaction doma... 765 0.0
AT2G14710.1 | Symbols: | F-box family protein | chr2:6298679-6... 243 4e-63
AT5G36660.1 | Symbols: | transposable element gene | chr5:1439... 156 5e-37
AT5G36737.1 | Symbols: | transposable element gene | chr5:1445... 156 5e-37
> AT1G32430.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11704932-11706325 REVERSE LENGTH=1143
Length=1143
Score = 765 bits (414), Expect = 0.0
Identities = 506/550 (92%), Gaps = 8/550 (1%)
Strand=Plus/Plus
Query 1 ATGGCGAATAAGGAGAAGCTTCCATGGGATATGGTGGAAGAGATCCTATCTCGTGTCCCT 60
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 ATGGCGAATAAGGAGAAGCTTCCATGGGATTTGGAGGAAGAGATCCTATCTCGTGTCCCT 60
Query 61 CCTACTTCTCTTGTCCGATTCAGAACCGTTTGCAAACGATGGAACGCTCTCTTCAACGAC 120
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTACTTCTCTTGACCGATTCAAAACCGTTTGCAAACGATGGAACGCTCTCTTCAACGAC 120
Query 121 AAGACGTTCATCAACAACCACAAGATGACGTTTCAATTTATTTTAACAACTACATCCAAG 180
||||||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||
Sbjct 121 AAGACGTTCATCAACAATCACAAGATGACGTTTCAATTCGTTTTATCAACTAGATCCAAG 180
Query 181 ATTTATTCGGTAAGCGTCAAACCCAAGGTAGAGGTGCGTGAGTTAACCTTAAATACTCCC 240
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 181 ATTTATTCAGTAAGCGTCAATCCCAAGGTAGAGGTGCGTGAGTTAACCTTAAATAATCCC 240
Query 241 GGTTTAAAAGCTCAAATACCTGAAT-TCTTGGTTGATACCAGTGGATTCTTGCTTTGTGA 299
|||||||||||||||| || | || | ||| ||| |||||||||||| |||||||||||
Sbjct 241 GGTTTAAAAGCTCAAAGACATAAAAAT-TTGTTTGCTACCAGTGGATTATTGCTTTGTGA 299
Query 300 CGTGGGTAATGGAGCTGTGGTTTGGAACCCTTGGTTAAGACAGACTAGATGCATCGAGCC 359
||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| |||
Sbjct 300 CGTGGGTAATGGAGCCGTGGTTTGGAACCCTTGGTTAAAACAGTCTAGATGCATCAAGCT 359
Query 360 CGAGGTTAACCAACCTAGTTTGGATTTTGTTGGCATAGGTTATGATAATAATAAGAGAGT 419
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 360 CGAGGTTAACGAACCTAGTTTGGATTTTCTTGGCATAGGTTATGATAATAATAAGAGAGT 419
Query 420 TGAGGAAATTGTTTACAAGACCCTTTCGGTTTATATGAAGGACTTAGGCTCT-AGCGATA 478
|||||||||||||||||| || ||||||||||||||||| |||||||||||| | |||
Sbjct 420 TGAGGAAATTGTTTACAAAACACTTTCGGTTTATATGAAAGACTTAGGCTCTCAAT-ATA 478
Query 479 CGTGGAAAATCCATGACTTTGCCTCCGATACGTGGAAAGATGAAGAT-TTAGACGAAG-C 536
|||||||||||||||||||||||||||||||||||| ||| |||| || || ||| |
Sbjct 479 CGTGGAAAATCCATGACTTTGCCTCCGATACGTGGATAGACCAAGAGATT-GAA-AAGAC 536
Query 537 AAAATATAGT 546
||||||||||
Sbjct 537 AAAATATAGT 546
Score = 523 bits (283), Expect = 1e-147
Identities = 384/432 (89%), Gaps = 9/432 (2%)
Strand=Plus/Plus
Query 679 GAAGAATTCTTGAAGTTTTGTGATCTACCAAGTGGGAAGAACAATGC-TTGCGATGCTCT 737
||| ||||||| |||||||||||||||||||| ||||||||| | | | | ||||||||
Sbjct 611 GAA-AATTCTTCAAGTTTTGTGATCTACCAAGCGGGAAGAACCGT-CGTCGTGATGCTCT 668
Query 738 TGTCGTAAGGGTTTTTAGGGAAGATCGTTTTTCGTTGTTGAAGCAGTGCCATGTAACAAA 797
|| | | |||||||||||||||||| | ||||||||||||| |||||| |||||||||||
Sbjct 669 TGCCCTTAGGGTTTTTAGGGAAGATAGGTTTTCGTTGTTGAGGCAGTGTCATGTAACAAA 728
Query 798 GAAGATAAAGATTTGGGTGACCAAGAACAAGATTGATAATCAGTACGGTGGGGATGTGAA 857
|||||| |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||
Sbjct 729 GAAGATTAAGATTTGGGTGACAAAGAACAAGATTGATAATCGGTATGGTGGGGATGTGAA 788
Query 858 ATGGATGAGTTTCATGGAGGTGTCAATTCCTAACATGCCGGATTTAGTACAGACCAAATT 917
|||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 789 ATGGATGAGTTTCATGGAGGTGTCAATTCCTACCATGCCGGATTTAGAACATCCCAAATT 848
Query 918 CTA-CTATCAGCCAAGTTACTTCATTGACGATAAAAGGCTCGTCATTTGTTCTTGTGATG 976
|| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 849 -TAACTCTCAGCCAAGTTACTTCATTGATGATAAAAGGCTCGTCATTTGTTCTTGTGATG 907
Query 977 AAACTGGTCAGGCATGGATCTATGTTTTGGGGG-AAGAGAAGTTGATCAATAAAGTTCGC 1035
||||||||| ||| |||||||||||| |||||| || | |||||| ||| |||| |
Sbjct 908 AAACTGGTCGGGCTTGGATCTATGTTGTGGGGGGAA-ATAAGTTGGTCAGTAAAACCCAA 966
Query 1036 TTGGATTCTGTGGCCGATCCTTGGCCTTTGTATTGTACCTATTTTCCCAA-TTTGGTCCT 1094
||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||
Sbjct 967 TTGGATTCTGTGGTTGATCCTTGGCCTTTGCATTGTACCTATTTTCC-AAGTTTGGTCCT 1025
Query 1095 AATTCCTGGAGG 1106
||||||||||
Sbjct 1026 GGTTCCTGGAGG 1037
> AT2G14710.1 | Symbols: | F-box family protein | chr2:6298679-6300150
FORWARD LENGTH=1472
Length=1472
Score = 243 bits (131), Expect = 4e-63
Identities = 285/359 (79%), Gaps = 12/359 (3%)
Strand=Plus/Plus
Query 19 CTTCCATGGGA-TATGGTGGAAGAGATCCTATCTCGTGTCCCTCCTACTTCTCTTGTCCG 77
||||||||||| | || | |||||||| || ||||||||||| |||| ||||| || ||
Sbjct 276 CTTCCATGGGAGT-TGATTGAAGAGATACTCTCTCGTGTCCCACCTAAATCTCTCGTTCG 334
Query 78 ATTCAGAACCGT-TTGCAAACGATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACA 136
||||||||||| | | |||| |||||||||||| ||| |||||||||||||||||||||
Sbjct 335 CTTCAGAACCGTATCG-AAACAATGGAACGCTCTTTTCGACGACAAGACGTTCATCAACA 393
Query 137 ACCACAAGATGACGTTTCAATTTATTTTAACAACTACATCCAAGATTTATTCGGTAAGCG 196
|||||||||||||||||| ||||| ||| |||| | ||||||||||||||||||||||
Sbjct 394 ACCACAAGATGACGTTTCGTTTTATCTTAGCAACCAAATCCAAGATTTATTCGGTAAGCA 453
Query 197 TCAAACCCAAGGTAGAGGTGCGTGAGTTAACCTTAAATACTCCCGGTTTAAAAGCTCAA- 255
|| | ||| | ||| ||| ||||||||| ||||| || ||| |||||| || ||
Sbjct 454 TCGATCCCGTGATAGTGGTACGTGAGTTACCCTTAGGTATTCCAGGTTTAGAATCTTTGG 513
Query 256 ATACCTGAATT-CTTGGTTGATACCAGTG-GATTCTTGCTTTGTGACGTGGGTAATGGAG 313
| || | ||| |||||||||| || || | || ||| | |||| | ||||| |
Sbjct 514 A-ACTT-AATAACTTGGTTGATTGCAATGAG-TTGTTGGTATGTGTTAAGAACAATGGTG 570
Query 314 CTGTGGTTTGGAACCCTTGGTTAAGACAGACTAGATGCATCGAGCCCGAGGTTAA-CCA 371
| || ||||||||||||||||| |||||| |||||| ||| |||| ||| |||| |||
Sbjct 571 CGGTTGTTTGGAACCCTTGGTTGGGACAGAGTAGATGGATCCAGCC-GAGTTTAAACCA 628
> AT5G36660.1 | Symbols: | transposable element gene | chr5:14396688-14399025
FORWARD LENGTH=2338
Length=2338
Score = 156 bits (84), Expect = 5e-37
Identities = 207/264 (78%), Gaps = 17/264 (6%)
Strand=Plus/Plus
Query 99 ATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACAACCACAAGATGACGTTTCAATT 158
||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 1 ATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACAACCACAAGACAACGTATCGATT 60
Query 159 TATTTTAACAACTACATCCAAGATTTATTCGGTAAGCGT-CAAACCCAAGGTAGAGGTGC 217
|| |||||||| | || ||||||||||||||||||| | || || ||| |||| |
Sbjct 61 CATCTTAACAACCAAATTCAAGATTTATTCGGTAAGCATTCAT-CCGAAGATAGAAATAT 119
Query 218 GTGAGTTAACCTTAAATACTCCCGGTTTAAAAGCTCAAATACCTGAATTCTTGGTTGATA 277
||| ||||||||| ||| ||| |||||| || | || |||||| || | |||| |||
Sbjct 120 ATGAATTAACCTTAGATATTCCTGGTTTAGAATCCCAGATACCTAAAAACATGGTAGAT- 178
Query 278 CCAGTGGATT-CTTGCTTTGTGACGTGG-GTAATGGAGCTGTGGTTTGGAACCCTTGGTT 335
|| ||| || | ||| | ||| | || |||||||||||||||||||| || ||
Sbjct 179 ----TG-ATTGCTA-CGTTGC-A--TGGAGAAA-GGAGCTGTGGTTTGGAACCCATGCTT 228
Query 336 AAGACAGACTAGAT-GCATCGAGC 358
||||||| | ||| | |||||||
Sbjct 229 GAGACAGAGTGGATAG-ATCGAGC 251
> AT5G36737.1 | Symbols: | transposable element gene | chr5:14455987-14458324
FORWARD LENGTH=2338
Length=2338
Score = 156 bits (84), Expect = 5e-37
Identities = 207/264 (78%), Gaps = 17/264 (6%)
Strand=Plus/Plus
Query 99 ATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACAACCACAAGATGACGTTTCAATT 158
||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||
Sbjct 1 ATGGAACGCTCTCTTCAACGACAAGACGTTCATCAACAACCACAAGACAACGTATCGATT 60
Query 159 TATTTTAACAACTACATCCAAGATTTATTCGGTAAGCGT-CAAACCCAAGGTAGAGGTGC 217
|| |||||||| | || ||||||||||||||||||| | || || ||| |||| |
Sbjct 61 CATCTTAACAACCAAATTCAAGATTTATTCGGTAAGCATTCAT-CCGAAGATAGAAATAT 119
Query 218 GTGAGTTAACCTTAAATACTCCCGGTTTAAAAGCTCAAATACCTGAATTCTTGGTTGATA 277
||| ||||||||| ||| ||| |||||| || | || |||||| || | |||| |||
Sbjct 120 ATGAATTAACCTTAGATATTCCTGGTTTAGAATCCCAGATACCTAAAAACATGGTAGAT- 178
Query 278 CCAGTGGATT-CTTGCTTTGTGACGTGG-GTAATGGAGCTGTGGTTTGGAACCCTTGGTT 335
|| ||| || | ||| | ||| | || |||||||||||||||||||| || ||
Sbjct 179 ----TG-ATTGCTA-CGTTGC-A--TGGAGAAA-GGAGCTGTGGTTTGGAACCCATGCTT 228
Query 336 AAGACAGACTAGAT-GCATCGAGC 358
||||||| | ||| | |||||||
Sbjct 229 GAGACAGAGTGGATAG-ATCGAGC 251
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5