BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913071

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32560.1 | Symbols:  | Late embryogenesis abundant protein, ...   455    2e-127


> AT1G32560.1 | Symbols:  | Late embryogenesis abundant protein, 
group 1 protein | chr1:11774484-11775279 FORWARD LENGTH=696
Length=696

 Score =  455 bits (246),  Expect = 2e-127
 Identities = 315/348 (91%), Gaps = 5/348 (1%)
 Strand=Plus/Plus

Query  1    ATGCAATCGGCGAAACAGAAGATAAGCGATATGGCTAGTACAGCCAAGGAGAAGATAGTT  60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  45   ATGCAATCGGCGAAACAGAAGATAAGCGATATGGCTAGTACAGCCAAGGAGAAGATGGTG  104

Query  61   ATGTGTCAAGCAAAAGCTGATGAGAAGGCCGAGCAGGCGATGGCGAGGACGAAAGAGGAG  120
            || |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct  105  ATATGTCAAGCAAAAGCTGATGAGAAGGCAGAGCGGGCGATGGCGAGGACGAAAGAGGAG  164

Query  121  AAAGAGATAGCGCACCAGCGAAGAAAGGCGAAGGAAGCAGAGGCGAAGATGGACATGCAC  180
            ||||||||||||||||| || |||||||||||||||||||| ||||| ||||| ||||||
Sbjct  165  AAAGAGATAGCGCACCAACGGAGAAAGGCGAAGGAAGCAGAAGCGAATATGGATATGCAC  224

Query  181  TTGGCTAAAGCGGCTCATGCTGAAGACAAGCTAATGACTAAGCAATCTCATTACCACGTT  240
             ||||||||||||||||||| ||||||||||| ||| ||||||||||||| ||||| |||
Sbjct  225  ATGGCTAAAGCGGCTCATGCGGAAGACAAGCTTATGGCTAAGCAATCTCACTACCATGTT  284

Query  241  G--G-TCATGGTCCACATGTGCCTCAACACG-GTCCTATACCGGCTCCAGCGCCGGTCAT  296
               | ||||||||| || ||||||||||| | | ||| |||||||||| || ||||| ||
Sbjct  285  ACTGATCATGGTCCCCACGTGCCTCAACAAGCG-CCTGTACCGGCTCCCGCACCGGTTAT  343

Query  297  GGGGCATGGTTACGGGCATAATCCTACTGGAGTTACCTCGGTGCCTCC  344
            ||| || |||||||||||||||||||| ||||||||||| ||||||||
Sbjct  344  GGGACACGGTTACGGGCATAATCCTACCGGAGTTACCTCAGTGCCTCC  391



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5