BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913079
Length=498
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32660.1 | Symbols: | F-box and associated interaction doma... 523 5e-148
> AT1G32660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11811040-11812380 FORWARD LENGTH=1341
Length=1341
Score = 523 bits (283), Expect = 5e-148
Identities = 416/476 (87%), Gaps = 25/476 (5%)
Strand=Plus/Plus
Query 1 ATGAAACGCAAGGACGATGA-CA--ATGACAGATTC-TATAGCAGTC-CAAGTAAGTTAG 55
|||||||||||||||||||| || | |||||| || | |||||| | ||||||||||||
Sbjct 1 ATGAAACGCAAGGACGATGACCAGGAGGACAGA-TCATGTAGCAG-CGCAAGTAAGTTAG 58
Query 56 ATCCAATTCCTCTTGATCTAAAGATGACTACAGTGCCTAGCAAATCTCATATGAAAAAGA 115
|||| || |||||||||||||||||| |||||||||||| ||||||||||||||| ||||
Sbjct 59 ATCCGATCCCTCTTGATCTAAAGATGGCTACAGTGCCTACCAAATCTCATATGAAGAAGA 118
Query 116 GCCACCAAAATAAACTTGAGGAAGATGAGAACG-ACACAACAAACCC---T-AG-TA-AG 168
| |||||||||||||| |||||||||||||| | | || |||||||| | || || ||
Sbjct 119 GTCACCAAAATAAACTCGAGGAAGATGAGAAAGAAGAC-ACAAACCCTAGTAAGTTAGAG 177
Query 169 TTAGATTCGCTCCCTCTTGATCTAAAGATGGCTATACTGACTAGAATGCCTGCCAAGTCT 228
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 178 TTAGATTCGCTGCCTCTTGACCTAAAGATGGCGATACTGACTAGAATCCCTGCCAAGTCT 237
Query 229 CTTATGAAGTTGCGATGCGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGATTC 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 CTTATGAAGTTGCGATGCGTGTCAAAGATGTGGTCTTCCATCATCCGAAGCCGAGGTTTC 297
Query 289 ATTGATTCCTACTACGCTACCTCCTCGAGGCAATCACGGTTTATTGTCGGTTTTAGTAAC 348
||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||||||
Sbjct 298 ATTGATTCCTACTACGCTATCTCCTCGAAGCAATCACGGTTTATAGTCGGTTTGAGTAAC 357
Query 349 GGTGTATTCGGC-ACGCCTGAGGAG-AGGCTTACCTTCTTCTTCTCATTTTCACACGACG 406
| || ||| | | ||||||| || || ||||||||| ||||||| ||||| ||||| |
Sbjct 358 GCTGCATTTAACGA-GCCTGAGAAGCAG-CTTACCTTCCTCTTCTCGTTTTCCCACGAAG 415
Query 407 A-GG-GACAAGAGT-CTTCTTCTT-T--GCTACCCACCTTCGAGATGGCAGTTCCC 456
| || || ||| | ||||||||| | | |||||| |||||||||||||||||||
Sbjct 416 ACGGAGAGAAGTCTTCTTCTTCTTCTTTGGTACCCAACTTCGAGATGGCAGTTCCC 471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23760751531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5