BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913087
Length=642
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32700.1 | Symbols: | PLATZ transcription factor family pro... 1014 0.0
> AT1G32700.1 | Symbols: | PLATZ transcription factor family protein
| chr1:11827433-11829759 FORWARD LENGTH=1112
Length=1112
Score = 1014 bits (549), Expect = 0.0
Identities = 614/645 (95%), Gaps = 6/645 (1%)
Strand=Plus/Plus
Query 1 ATGGGAGCTGAAGAAGAAACCAATAAGACATGGCCTCCA-TGGCTAAAACCTCTACTTA- 58
||||||||||||||||||||||||||||||| ||| || |||||||||||||| | ||
Sbjct 156 ATGGGAGCTGAAGAAGAAACCAATAAGACATATCCT-CATTGGCTAAAACCTCTGC-TAC 213
Query 59 GAGAAAAATTCTTCGTACAATGCAAATTACACGCAGATTCACACAAGAGTGAGTGTAACA 118
||||||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 214 GAGAAAAGTTCTTTGTACAATGCAAATTACACGCAGATTCACATAAGAGTGAATGTAACA 273
Query 119 TGTACTGTTTAGACTGTACCAATGGTCctctctgttctctctgtc-tctctTTCCACAAA 177
||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||
Sbjct 274 TGTACTGTTTAGACTGTACCAATGGTCCTCTCTGTTCTCTCTG-CTTATCTTTCCACAAA 332
Query 178 GATCATCACGCCATTCAGATAAGGAGATCATCGTATCATGATGTTATAAGAGTGTCGGAG 237
|| |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct 333 GACCATCACGCCATTCAGATAAGAAGATCATCATATCACGATGTTATAAGAGTGTCGGAG 392
Query 238 ATTCAGAAGTTTCTTGACATAACTGGAGTTCAGACATATGTGATCAACAGTGCTAAGGTT 297
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 393 ATTCAGAAGTTTCTGGACATAACAGGAGTTCAGACATATGTGATCAACAGTGCTAAGGTT 452
Query 298 GTGTTCTTGAACGAGAGACCTCAGCCTCGACCAGGCAAAGGTGTGATCAATACTTGCGAA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 453 GTGTTCTTGAACGAGAGACCTCAGCCTCGACCAGGCAAAGGTGTGATCAATACTTGTGAA 512
Query 358 GTCTGTTATCGAAGCCTCGTTGATTCCTTCAGATTCTGCTCTCTTGGTTGCAAGATCTCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GTCTGTTATCGAAGCCTCGTTGATTCCTTCAGATTCTGCTCTCTTGGTTGCAAGATCTCT 572
Query 418 GGAATATCGAAGAAGAAAAGAAAGGAATGGACGAATAATCTTTCGGATTCTGATGATTCG 477
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 573 GGAATATCGAAGAAGAAGAGAAAGGAATGGACGAACAATCTTTCGGATTCTGATGATTCG 632
Query 478 TATAGCAGTACGAGTATCGGAAGGCTCAAGAAGAATGATGACATTATGAATAATGGTTTC 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 633 TATAGCAGTACGAGTATCGGAAGGCTCAAGAAGAATGATGACATTATGAATAATAGTTTC 692
Query 538 ATGCCATCAACACCGCCTCTATCAGCCGTGAATCGCCGAATTGCAAAACGAAGGAAGGGA 597
| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||
Sbjct 693 ACACCATCAACACCGCCTTTATCAGCCGTGAATCGTCGAATTGCAAAGCGAAGGAAGGGA 752
Query 598 ATCCCGCACCGTGCTCCTTTTGGAGGACTAATCATAGAATACTAA 642
|||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 753 ATCCCGCATCGTGCTCCTTTCGGAGGACTAATCATAGAATACTAA 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30994468699
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5