BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913089

Length=456
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32710.1 | Symbols:  | Cytochrome c oxidase, subunit Vib fam...   409    1e-113


> AT1G32710.1 | Symbols:  | Cytochrome c oxidase, subunit Vib family 
protein | chr1:11833113-11833706 FORWARD LENGTH=405
Length=405

 Score =  409 bits (221),  Expect = 1e-113
 Identities = 357/418 (85%), Gaps = 28/418 (7%)
 Strand=Plus/Plus

Query  1    ATGTCGTCAGCGCAAATGGATCCACACGACAAGATGAGATCGCGCGACATAAGTAAAGTT  60
            ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  1    ATGTCATCGGCGCAAATGGATCCACACGACAAGATGAGATCGCGTGACATAAGTAAAGTC  60

Query  61   GCGAGAGGCCAGCAAGCGCCAAGACCAGCTCATACTCCCGGTACAGTGTCACCGCCACCG  120
            ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct  61   GCGAGAGGCCAGCAAGCACCAAGACCAGCTCACACTCCCGGTACGGTGTCACCCCCACCG  120

Query  121  CAAAACGAGGCAACGTTTCgagcgaagagaggagaggacagcggagagagcggagaagag  180
             |||| ||||||||||||||||| |||||||||||  |  | ||| ||||   ||| | |
Sbjct  121  GAAAATGAGGCAACGTTTCGAGCAAAGAGAGGAGAT-A--GTGGA-AGAG---AGACG-G  172

Query  181  GTGGATTCAACTGTGGAAAAACGGTTTCCGGTAACTAATGAAACGCGACATTGTTTCAAT  240
             ||    |  | |||||| |||| ||||| || |||||||||||||||||||||||||||
Sbjct  173  ATGC---CG-CGGTGGAAGAACGTTTTCCAGTGACTAATGAAACGCGACATTGTTTCAAT  228

Query  241  CGGTTCATGCAATACAATAAATGTATTGAGAAAAATGGAAGAGATGC-ATATGATTGCAA  299
            ||||||||||||||| |||| |||||||||||||||||||||||||| | ||||||||||
Sbjct  229  CGGTTCATGCAATACCATAAGTGTATTGAGAAAAATGGAAGAGATGCGA-ATGATTGCAA  287

Query  300  CAACTTGAGAGATTATGTGCGTTCAATGTGTCCC-AA-A---G---A------TTTGGTT  345
            ||||||||||||||| || |||||||| |||||| || |   |   |      |||||||
Sbjct  288  CAACTTGAGAGATTACGTACGTTCAATTTGTCCCGAAGAATTGGTGAGCAAAATTTGGTT  347

Query  346  GACAAGTGGGAGGAACAGAGAAAGTCTGGGACATTGCCATCGTCAATACGAAGATTAG  403
            || |||||||||||||| |||||||| |||||||| ||| |||||||| |||||||||
Sbjct  348  GAAAAGTGGGAGGAACAAAGAAAGTCAGGGACATTACCAGCGTCAATATGAAGATTAG  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21715667568


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5