BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913089 Length=456 Score E Sequences producing significant alignments: (Bits) Value AT1G32710.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 409 1e-113 > AT1G32710.1 | Symbols: | Cytochrome c oxidase, subunit Vib family protein | chr1:11833113-11833706 FORWARD LENGTH=405 Length=405 Score = 409 bits (221), Expect = 1e-113 Identities = 357/418 (85%), Gaps = 28/418 (7%) Strand=Plus/Plus Query 1 ATGTCGTCAGCGCAAATGGATCCACACGACAAGATGAGATCGCGCGACATAAGTAAAGTT 60 ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGTCATCGGCGCAAATGGATCCACACGACAAGATGAGATCGCGTGACATAAGTAAAGTC 60 Query 61 GCGAGAGGCCAGCAAGCGCCAAGACCAGCTCATACTCCCGGTACAGTGTCACCGCCACCG 120 ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||||| Sbjct 61 GCGAGAGGCCAGCAAGCACCAAGACCAGCTCACACTCCCGGTACGGTGTCACCCCCACCG 120 Query 121 CAAAACGAGGCAACGTTTCgagcgaagagaggagaggacagcggagagagcggagaagag 180 |||| ||||||||||||||||| ||||||||||| | | ||| |||| ||| | | Sbjct 121 GAAAATGAGGCAACGTTTCGAGCAAAGAGAGGAGAT-A--GTGGA-AGAG---AGACG-G 172 Query 181 GTGGATTCAACTGTGGAAAAACGGTTTCCGGTAACTAATGAAACGCGACATTGTTTCAAT 240 || | | |||||| |||| ||||| || ||||||||||||||||||||||||||| Sbjct 173 ATGC---CG-CGGTGGAAGAACGTTTTCCAGTGACTAATGAAACGCGACATTGTTTCAAT 228 Query 241 CGGTTCATGCAATACAATAAATGTATTGAGAAAAATGGAAGAGATGC-ATATGATTGCAA 299 ||||||||||||||| |||| |||||||||||||||||||||||||| | |||||||||| Sbjct 229 CGGTTCATGCAATACCATAAGTGTATTGAGAAAAATGGAAGAGATGCGA-ATGATTGCAA 287 Query 300 CAACTTGAGAGATTATGTGCGTTCAATGTGTCCC-AA-A---G---A------TTTGGTT 345 ||||||||||||||| || |||||||| |||||| || | | | ||||||| Sbjct 288 CAACTTGAGAGATTACGTACGTTCAATTTGTCCCGAAGAATTGGTGAGCAAAATTTGGTT 347 Query 346 GACAAGTGGGAGGAACAGAGAAAGTCTGGGACATTGCCATCGTCAATACGAAGATTAG 403 || |||||||||||||| |||||||| |||||||| ||| |||||||| ||||||||| Sbjct 348 GAAAAGTGGGAGGAACAAAGAAAGTCAGGGACATTACCAGCGTCAATATGAAGATTAG 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21715667568 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5