BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913105
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase famil... 518 7e-146
> AT1G08060.1 | Symbols: MOM, MOM1 | ATP-dependent helicase family
protein | chr1:2501742-2511084 REVERSE LENGTH=6554
Length=6554
Score = 518 bits (280), Expect = 7e-146
Identities = 567/695 (82%), Gaps = 62/695 (9%)
Strand=Plus/Plus
Query 769 AAGCCGAACATAACACCAGAACGACAGTCGACAAAGATAGAG--GCGAGTAAGAATCTTG 826
||||||| ||||||||| | || | |||||||||||||| | || |||||||||||
Sbjct 5660 AAGCCGAGCATAACACC---A-GA-A--CGACAAAGATAGAGAAG-GA-TAAGAATCTTG 5710
Query 827 TGATAATGAACAAACTGATAAGAGTATTGCGTTCTTGTCCAAATGTACCGACAAGAAGGC 886
| ||||||||||||||| | | | | ||||||||||||||||||||| ||||||||||
Sbjct 5711 TTATAATGAACAAACTG-TTGGCG-AATGCGTTCTTGTCCAAATGTACTGACAAGAAGGT 5768
Query 887 ATCTCCCTCAGCAGCTCCAA---G------T--GCACCTAGCACAGAGAGCAGCACAAGT 935
||||||||||| |||||||| | | ||| |||||||||||||||||||||||
Sbjct 5769 ATCTCCCTCAGGAGCTCCAAGGGGTAAAATTCAGCAGCTAGCACAGAGAGCAGCACAAGT 5828
Query 936 GAACGCGCTGAGAAATTACACTGCTCCTGCTCCTGCTCCTGCGGCTCTGCAGCTTCAGTC 995
|| || ||||||||||||| ||||||| | | ||| | | | ||| |||| |
Sbjct 5829 GAGTGCACTGAGAAATTACATTGCTCCT-CAGCAGCT--T-CAG----GCATCTTC--TT 5878
Query 996 ATCTTTGTTTCCTACTCCTGCTCT-GGCTCTTCTGCAGCTTCAGGC-ATCGTCATTTCC- 1052
|| || |||| || ||| | | ||||| |||||| ||||| || ||| ||||||||
Sbjct 5879 TTC-CTG-CTCCTGCT-CTGGTTTCGGCTCCTCTGCAACTTCA-GCAATCATCATTTCCT 5934
Query 1053 G-----GCTCCGGCTCTTTTGCAGCCTCAGGCATCTTCATTTACTTCTTCAGTCTCGCGT 1107
| | |||||||| | ||||||||||||||||||| ||| ||||||||||||| |||
Sbjct 5935 GCTCCTGGTCCGGCTCCTCTGCAGCCTCAGGCATCTTCGTTTCCTTCTTCAGTCTCTCGT 5994
Query 1108 CCATCAGGCCTTCCTCTGAATTCTACGGTCTGCCCAATGCCTCAGCCAAGACAGCCACTC 1167
||||||| ||||| |||||||| | ||||||| |||||||||||||| |||||||| |||
Sbjct 5995 CCATCAGCCCTTCTTCTGAATTTTGCGGTCTGTCCAATGCCTCAGCCCAGACAGCCTCTC 6054
Query 1168 ATATCCAACACGGCTCCAACTCCGTCAGATT-CTCCTGCAACTAATCAAATTGCCAATGC 1226
|||||||||| ||||||||||| |||| || |||||| | || |||| | || | |
Sbjct 6055 ATATCCAACATAGCTCCAACTCCATCAG-TTACTCCTG---C-AA-CAAA-T-CC-A-G- 6103
Query 1227 AAGTCTACATTCTCCTGCACCGCACTTAAGCTCATATAGGCCAGCCCCTTCAGTTCCCGT 1286
|||| | |||||||||||| ||| ||| ||||||||| ||| || ||||| ||||||
Sbjct 6104 --GTCTGCGTTCTCCTGCACCACACCTAAACTCATATAGACCATCCTCTTCAACTCCCGT 6161
Query 1287 AGACACAGCTACTCTAACCTTGTC-GTTGCCTCCTCAAGCTTTAACATATTCAGCTGTAT 1345
| ||||||||||| ||||| ||| | |||||||||||||||| |||||||||||||| |
Sbjct 6162 CGCCACAGCTACTCCAACCTCGTCAG-TGCCTCCTCAAGCTTTGACATATTCAGCTGTGT 6220
Query 1346 TAATTCAGCAGCAGCAAGAACAACAACCGCAACAAAGCTTGAGCAGTGGATTGCAGGGAA 1405
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 6221 CAATTCAGCAGCAGCAAGAACAACAACCGCAACAGAGCTTGAGCAGTGGATTGCAGAGCA 6280
Query 1406 ACAATGATGTGGTTTGTCTTTCTGACGACGAGTGA 1440
||||||| |||||||||||||||||||||||||||
Sbjct 6281 ACAATGAAGTGGTTTGTCTTTCTGACGACGAGTGA 6315
Score = 270 bits (146), Expect = 2e-71
Identities = 174/187 (93%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 467 GTGGTGTGGAGCTTTCAGCAGGTGTTACAGCTTC-TGTTCCATCACTTCTAAACAATGGT 525
|||| ||||||| |||||||||||| ||||| || ||||||||||||||| |||||||||
Sbjct 5396 GTGGCGTGGAGCATTCAGCAGGTGTAACAGC-TCTTGTTCCATCACTTCTTAACAATGGT 5454
Query 526 ACTGG-ACAGAGTGCCGTTCAACCTGTTCCTCAAATACTTTTCCGTGTGTTCGACGACCC 584
|| || ||||| |||||||||||||||||||||||||| ||||| ||||||| |||||||
Sbjct 5455 AC-GGAACAGATTGCCGTTCAACCTGTTCCTCAAATACCTTTCCCTGTGTTCAACGACCC 5513
Query 585 GTTTCTGCATGAACTGGAGAAGTTGCAGAGAGAATCAGAGAACTCAAAGAAGACTTTTGA 644
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 5514 GTTTCTGCATGAACTGGAGAAGTTGCGGAGAGAATCAGAGAACTCAAAGAAGACTTTTGA 5573
Query 645 AGAAAAA 651
|||||||
Sbjct 5574 AGAAAAA 5580
Score = 202 bits (109), Expect = 8e-51
Identities = 140/154 (91%), Gaps = 5/154 (3%)
Strand=Plus/Plus
Query 94 GACAAGAAGCAAAAACTTGAAACTAGAAAAAAGT-TGGAAGCAGCAGTAATTCGTATTTC 152
||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| |
Sbjct 3784 GACAAGAAGCAGAAACTTGAAACTAG-TAAAAGTGTGGAAGCAGCAGTAATTCGTATTAC 3842
Query 153 CAGTTCACGGACCGGTACCCAAGTGGATGATCTCAAACGGCTGGATGATGAATT-TGAAA 211
| ||||||||||| |||| ||||||| ||||||||||| ||||||| || |||| |||||
Sbjct 3843 CTGTTCACGGACCAGTACTCAAGTGGGTGATCTCAAACTGCTGGATCAT-AATTATGAAA 3901
Query 212 GAAAGTTTGATGAAATCAAAAGTGAGAAAA-TGA 244
|||||||||||||||||||||||||||||| |||
Sbjct 3902 GAAAGTTTGATGAAATCAAAAGTGAGAAAAATGA 3935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5