BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913114

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40670.1 | Symbols:  | PQ-loop repeat family protein / trans...   145    3e-34
  AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079243-150...   124    4e-28


> AT5G40670.1 | Symbols:  | PQ-loop repeat family protein / transmembrane 
family protein | chr5:16285711-16287793 FORWARD LENGTH=1272
Length=1272

 Score =  145 bits (78),  Expect = 3e-34
 Identities = 172/213 (81%), Gaps = 24/213 (11%)
 Strand=Plus/Plus

Query  27   AGCTATATGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATCTCGATCTT  86
            |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  662  AGCTATCTGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTT  721

Query  87   CAACTCAATTCAAGTCGTCATGA---G--TCATG-ACAAGC----GTCA--GA--A-CG-  130
            ||| || ||||| ||| ||||||   |  ||| | |||  |    | ||  ||  | |  
Sbjct  722  CAATTCGATTCAGGTCTTCATGACATGCGTCAAGTACATCCCACAGGCAAAGATGAACTT  781

Query  131  -A--A--A-GAGCACAGTCGGATGGAGCATCGGGAATATTCTTCTCGACTTTGCTGGAGG  184
             |  |  | |||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct  782  CACTAGGAAGAGCACAGTCGGGTGGAGCATCGGGAATATTCTTCTCGATTTTACTGGAGG  841

Query  185  ACTTGCTAA-TAATATACAAATGGTTATACAAT  216
            ||||||||| || | | ||||||||||||||||
Sbjct  842  ACTTGCTAACTA-TCTGCAAATGGTTATACAAT  873


> AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079243-15081657 
REVERSE LENGTH=1230
Length=1230

 Score =  124 bits (67),  Expect = 4e-28
 Identities = 91/102 (89%), Gaps = 4/102 (4%)
 Strand=Plus/Minus

Query  225  CACAATCGAAAGTTGGGT-GAGGA-TCGTCACCGAGGATGGAGGAGGGCCAAGGAGTGGA  282
            |||||||| ||||| ||| ||||| | |||  |||| | ||| |||||||||||||||||
Sbjct  211  CACAATCGGAAGTT-GGTGGAGGAGT-GTCGTCGAGAACGGATGAGGGCCAAGGAGTGGA  154

Query  283  GGAGAAGATGTGGTGGAGGAAGTCATCGTGGTCGAATGTTGC  324
            ||||||||||||||||||||| ||||||||||||||||||||
Sbjct  153  GGAGAAGATGTGGTGGAGGAAATCATCGTGGTCGAATGTTGC  112



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5