BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913127
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2542 0.0
> AT1G33050.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 15 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G10470.1);
Has 531 Blast hits to 229 proteins in 83 species:
Archae - 0; Bacteria - 197; Metazoa - 59; Fungi - 50;
Plants - 48; Viruses - 0; Other Eukaryotes - 177 (source: NCBI
BLink). | chr1:11967827-11971532 REVERSE LENGTH=2677
Length=2677
Score = 2542 bits (1376), Expect = 0.0
Identities = 1659/1794 (92%), Gaps = 25/1794 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCACTACAGTCACGGAATTGATGGTTTACGAAGCGGTCTTTCACCATCCGCTAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 280 ATGAAGCACTACAGTCACGGAATTGATGGTTTACGAAGCGGTCTTTCACCTTCCGCTAAA 339
Query 61 CCTTTCGCAATCGGttcttcttcttctccttccttctctctcAAATCTGAACACGAAGAT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 340 CCTTTCGCAATCGGTTCTTCTTCTTCTCCTGCCTTCTCTCTCAAATCTGAACACGAAGAT 399
Query 121 TCTATCTGGGGTGATTATACTTTAGACCTTTCCTTTTTATCCTCTGATGATCAAAGAAGT 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 400 TCTATTTGGGGTGATTATACTTTAGACCTTTCCTTTTTATCCTCTGATGATCAGAGAAGT 459
Query 181 GGTCTTGATGATGATGATTCGTTATCTAACTTGTCTCGCGATGTGGAGACTAACAAAGAA 240
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 460 GGTCTCGATGATGATGATTCGTTATCTAACTTGTCTCGCGATGTTGAGACTAATAAAGAA 519
Query 241 GGATTGGTTTTGGAGGAGAAGATAGCTAGTTCTGGAAAGGTTTTGGTAAACCCTAATCC- 299
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GGATTGGTTTTAGAGGAGAAGATAGCTAGTTCTGGAAAGGTTTTGGTAAACCCTAATCCA 579
Query 300 AGTTTTCTCGAAATTGCCTGAGGTACTGATAAAGCCCTCAAATGTTGCTGGTGATGCAAA 359
|| |||||||||||||||||||||| |||| ||| ||||| |||||| ||||||||| ||
Sbjct 580 AG-TTTCTCGAAATTGCCTGAGGTATTGATGAAGTCCTCAGATGTTGTTGGTGATGCGAA 638
Query 360 GTTGGGTCTGTCCTGTGTCTCTGAGAAATCGTCTACAGAGTCTGATGAAGATGACTCTGA 419
||||||| ||||||||||||||||||| || ||||| |||||||| |||||| |||||
Sbjct 639 GTTGGGTTTGTCCTGTGTCTCTGAGAAGTCTTCTACGGAGTCTGACCTAGATGAGTCTGA 698
Query 420 GGAAGATTCTCCTTGTTGGATAGGAATGCATTCTCACAAGAGTCTGGCTTCAGGTGCTAA 479
|||||||||||||||||||| |||||||| |||||| |||||||||||||| ||| ||||
Sbjct 699 GGAAGATTCTCCTTGTTGGAAAGGAATGCTTTCTCATAAGAGTCTGGCTTCTGGTACTAA 758
Query 480 AGCTGTGGCTTCGAGGCGTTCGACTGATGATCTTAGTGGGTTTCAT-AGATTGAATCCTT 538
| || || |||| |||||||| |||||||||||||||||||||| | || ||||||||||
Sbjct 759 ATCTATGACTTCCAGGCGTTCTACTGATGATCTTAGTGGGTTTCGTAAG-TTGAATCCTT 817
Query 539 TGGCACCTCAGTTTGTACCATCTAATTCTAAGAAGAAAGTTGAAACGGATGGGGAAAAAT 598
|||||||||||||| ||||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 818 TGGCACCTCAGTTTATACCATCTAGTTCTAAGAAGAAACTTGAAACGGATGGGGAGAAAT 877
Query 599 GTGAAGAGAATAGTTCTTCGTCTTTGAAGAAGTCTCTGTCTTCAACTTTTCCGTCGTCAT 658
||||||||| |||||||||||| |||||||||||| |||| || |||||||||||||| |
Sbjct 878 GTGAAGAGACTAGTTCTTCGTCGTTGAAGAAGTCTTTGTCCTCGACTTTTCCGTCGTCGT 937
Query 659 CTGGAGAGTTCGATTTAACTGACCCTCCTCCTGAAGATGGAAGAAATGATGCAG-A-AAA 716
||||||| || ||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 938 CTGGAGAATTTGATTTAACTGACCCTCCTCTTGAAGATGGAAGAAATGATGCAGCAGAAA 997
Query 717 ACTGACAAGCATATTGACCCACAATGCAGATAAAATTTTCGGTTTTGTATCTAGTGATAG 776
| ||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 998 A--GACAAGCATCTTGACCCACAATGCAGATGAAATTCTCGGTTTTGTAACTAGTGATAG 1055
Query 777 CGGTTCCAAGACCGTGAGCATTTTGGATTCTAGAAATGAATTCCAACCATCGAAAAGGTT 836
| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1056 TGTTTCCAAGACTGTGAGCATGTTGGATTCTAGAAATGAATTCCAACCATCTAAAAGGTT 1115
Query 837 GGATCCTTTAGCCCCTGTTTTTGTTCCCTCTAGTGCAAAACTAAGTCCTTCTGTCCATGA 896
||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 1116 GGATCCTTTGGCCCCTGTCTTTGTTCCCTCTAGTGCAAAACTAGGTCCTTCTGTTCATGA 1175
Query 897 GAAGCAAGGAGCGTTTGAGGCAAATGCACATCCAACTTCTGCTCTTACTTCTTCAGATGA 956
||||| ||||| |||| || ||||||| || |||||||||||||| |||||||| |||
Sbjct 1176 GAAGCTAGGAGATTTTGTGGTAAATGCATATTCAACTTCTGCTCTTGCTTCTTCACATGT 1235
Query 957 TAAGTCACTAAATAAGGTCAAGGTAGCGACATCTTCTGGAGAAGTTGGCCACAGTTTTAA 1016
|||||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1236 TAAGTCGCTAGATAAGGGCAAGGTAGTGACATCTTCTGGAGAAGTTGGCCACAGTTTTAA 1295
Query 1017 GAGTCGATATGGTGGTCATGATTTAAGTTCCACATCTTCATACAATCCTTGGATTGAATC 1076
||||| |||||||||||||||||| |||| |||||||||||| ||||||||| |||||
Sbjct 1296 GAGTCAATATGGTGGTCATGATTTTGGTTCGACATCTTCATACGGTCCTTGGATAGAATC 1355
Query 1077 CAACGTTGGGATTACTGAGTATGCTAAACTAGGAAGCTCCAGCAACAAATCTCAAGGTCA 1136
| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1356 TGAGGTTGGGATTACTGAGTATGCAAAACTAGGAAG---CAGCAACAAATCTCAAGGTCA 1412
Query 1137 GCGGAGATTGAATCCATTGGCCAGTCAGTTCTCTCTTGCAGATGCTAAACCGAAAG-CAT 1195
|||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||
Sbjct 1413 GCGGAGATTGAATCCATTGGCCCGTCAGTTCTCTCTTGCAGATGCTAAA-CAAAAGCCAT 1471
Query 1196 ATGACTACGAG-AAAAACCAAACTTCAGATGATTTATCGCTAGTGGTGAATACTA-CTGG 1253
||| ||| | | ||||||||| || |||||||||||||||||||||||||||||| | ||
Sbjct 1472 ATGGCTATG-GTAAAAACCAAGCTGCAGATGATTTATCGCTAGTGGTGAATACTAGC-GG 1529
Query 1254 TTTATACATTCCAGCTCGTTATAGGGAGGACCATAATGTAGTAGATGCAGACTTAGCACA 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 TTTATACATTCCAGCTCGTTATAGGGAGGACCATAATGTAGTAGATGCAGACTTAGCACA 1589
Query 1314 ATCCTCAGTATATGTGGAACG-TTTCATTCCCAACATGTCACATGGCAGTTCTTCACTTA 1372
|||||||||| ||||||| || |||| |||||||||||||||||||| ||||||||||||
Sbjct 1590 ATCCTCAGTAAATGTGGAGCGTTTTC-TTCCCAACATGTCACATGGCGGTTCTTCACTTA 1648
Query 1373 TATCTCCAAAGGCAGACAGTAACATTGGGTCTACTAAGTGGTTTGCAGTGGAGCCAAATC 1432
|| |||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| |
Sbjct 1649 TAACTCCAAAGGCAGACAGTAACTTTGGGTCTACTAAGTGGATTGCGGTGGAGCCAAACC 1708
Query 1433 CTACATTTTCAGTAAAGGGTAGTAGAGATCTTAAGCATCCTCTTCCATTTCATGTTGTAG 1492
||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 1709 CTACATTTTCAGTAAAGGGTAATAGAGATTTTAAGCATCATCTTCCATTTCATGTTGTAG 1768
Query 1493 ATACTGCAGCGAGTTCATCTACAAGTGATATGAAAGCTTTACCTGGCCCATCTCCAAAAA 1552
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1769 AAACTGCAGCGAGTTCATCTACAAGCGATATGAAAGCTTTACCTGGCCCATCTCCAAAAA 1828
Query 1553 TGGATGTGAAGAAACTACTTACAACGATGCATGGACTGTCAGAGTTACTAACACTTGCAC 1612
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1829 TGGATGTGAAGAAACTACTTACAACGATGCATGGGCTGTCAGAGTTACTAACACTTGCAC 1888
Query 1613 ATGGTTCAGAATCTTCAGATTCACCGAATGCGGAAGAGCTTGATCTCATTAACAGTACTG 1672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1889 ATGGTTCAGAATCTTCAGATTCACCGAATGCGGAAGAGCTTGATCTCATTAACAGTACTG 1948
Query 1673 TACAGAATTTCAACTTGTACATCCAAAACAACACCCAGG--C-TG--GG-AATCAAAGCG 1726
|||||||| |||| ||||||||||||||||||| |||| | || || ||||||||||
Sbjct 1949 TACAGAATCTCAATTTGTACATCCAAAACAACAGTCAGGAACATGCTGGGAATCAAAGCG 2008
Query 1727 TTGCACAACGCAATTCATATGATCTAAAGCTGTTACCTAACAAGAGTAAGCTAT 1780
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2009 TTGCACAATACAATTCATATGATCTAAAGCTGTTACCTAACAAGAGTAAGCTAT 2062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90109978275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5