BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913145
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01410.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 355 3e-97
AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6 | ... 265 5e-70
AT2G34450.2 | Symbols: | HMG-box (high mobility group) DNA-bin... 255 3e-67
> AT4G01410.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr4:578165-579169
FORWARD LENGTH=1005
Length=1005
Score = 355 bits (192), Expect = 3e-97
Identities = 222/237 (94%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 490 GGAGGCAACGGTATACCAGTTTCGCCGGAAGTGGCTAACGGTTTGAAGAATGATGAAGCT 549
|||||||||||||||||||| ||||||||||| ||||| ||||| || ||||||||||||
Sbjct 591 GGAGGCAACGGTATACCAGTCTCGCCGGAAGTAGCTAATGGTTTAAAAAATGATGAAGCT 650
Query 550 TACGGTGTCGTTTTGATGAGAGTGGTGATTTTAGGGAGGCTCCGATGGAAAGCTGGTGCG 609
||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 651 TACGGCGTCGTTTTGATGAGAGTGGTGATTTTTGGGAGGCTACGTTGGAAAGCTGGTGCG 710
Query 610 ATTAAGACTGGACGGTATGGATTTTATGCAAGGTGTGATGTGTGGTTGAGATTTAATCCA 669
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 711 ATTAAGACTGGACGGTATGGATTTTACGCCAGATGTGATGTGTGGTTGAGATTTAATCCA 770
Query 670 TCTCCTAATGGACAAGTTCCTCTTCTCGCTCCGTCAACTTGTAAAGTTGATGTCTAG 726
||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 771 TCTTCTAACGGACAAGTTCCTCTTCTCGCTCCTTCAACTTGTAAAGTTGATGTCTAG 827
> AT4G02070.1 | Symbols: MSH6, MSH6-1, ATMSH6 | MUTS homolog 6
| chr4:906079-912930 FORWARD LENGTH=3975
Length=3975
Score = 265 bits (143), Expect = 5e-70
Identities = 177/193 (92%), Gaps = 3/193 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCCAACTTGTCGACAGATCAGCGAAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
|||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTCCGTCTCGCCGACAGATCAGCGGAAGATCTCCGTTGGTGAACCAGCAGCGTCAA 60
Query 61 ATCACCTCCTTCTTTGGGAAATATGCTTCCT--T-TTCTTCTCCATCTCCATCACCTTCA 117
|||||||||||||||||||||| |||||| | | ||||||||| |||||||| ||||||
Sbjct 61 ATCACCTCCTTCTTTGGGAAATCTGCTTCATCATCTTCTTCTCCGTCTCCATCTCCTTCA 120
Query 118 CCACCTCTGTCCAATAAGAAAACCCCCAAATCTATCAACCCTAACCCTAATTCTCCGTCT 177
||| |||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 121 CCATCTCTCTCCAATAAGAAAACCCCCAAATCTAACAACCCTAACCCTAAATCTCCGTCT 180
Query 178 CCGTCACCATCTC 190
|||||||||||||
Sbjct 181 CCGTCACCATCTC 193
> AT2G34450.2 | Symbols: | HMG-box (high mobility group) DNA-binding
family protein | chr2:14527736-14529492 REVERSE LENGTH=685
Length=685
Score = 255 bits (138), Expect = 3e-67
Identities = 172/187 (92%), Gaps = 7/187 (4%)
Strand=Plus/Plus
Query 189 TCGTGCAGCGGAGGCTCTAGTCGGTAAGAACTTAGAGTTGGATGTGAAGTCAAGTGAAGG 248
|||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct 84 TCGTGCAGCGGAGGCTCTAGTC-G---GAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGG 139
Query 249 TGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGCGAAAGCCAAAGTCAAGCCCGAA 308
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||
Sbjct 140 TGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGAGAAAGCCAAAGACAAGCCCCAA 199
Query 309 GAAGAAGAAACCCGTTAAACTCCATTCAAAGATGCCCAAGAAACCTCCCACTGCTTTCTT 368
|||||| | |||||||||||||| | |||||||||||||||||| |||||||||||||
Sbjct 200 GAAGAA-A--CCCGTTAAACTCCAAACGAAGATGCCCAAGAAACCTGCCACTGCTTTCTT 256
Query 369 CTTTTTC 375
|||||||
Sbjct 257 CTTTTTC 263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5