BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913172
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33530.1 | Symbols: | F-box family protein | chr1:12159884-... 1142 0.0
> AT1G33530.1 | Symbols: | F-box family protein | chr1:12159884-12161314
FORWARD LENGTH=1326
Length=1326
Score = 1142 bits (618), Expect = 0.0
Identities = 787/866 (91%), Gaps = 22/866 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTTTTCAATTGTGAAACTAGTGAACTTGAAGAGAAAGAAGTGGCAGTCGAAGCTC 60
||| |||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTTTTTCAATTGAGAAACTGGTGGACTTGAAGAGAAAGAAGTGGCAGTCGAAGCTC 60
Query 61 CAAAATACAAAGAAACAGGTTTTAGGCCGATGTTTAGCAAATTTTAGCAGACTTTTGAGT 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CAAAATACAAAGAAACAGGTTTTAGGCCGATGTTTAACAAATTTTAGCAGACTTTTGAGT 120
Query 121 TTTCGTAAGAAACAAGAAAGGAACGGAAAAAACCCTAGATGTAGCAAAACCACGCTTGCT 180
||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||
Sbjct 121 TTTCGTAAGAAACAAGAAACAAACGGAAAAAGCCCTAGATGTAGCAAAGCCACGCTTGCT 180
Query 181 GTTGTTGTTCATCCAATATCTAGTGCTATACAAGAGGATCTTGTTGAAGACATATGTAAG 240
|||||||||||||||| | | ||| ||| ||| || ||| || || || |||||
Sbjct 181 GTTGTTGTTCATCCAACAGCCAGTACTACACATGATGAT-TT-TT-------TACGTAAG 231
Query 241 AAACAAGAAAGGAGCGGAAAAAGCCCTAGTTATAGCGAAACAACGCTTCCTGTTGAGTTA 300
||||||||||||||||||||||||||||| | |||||||||||||||| |||| ||||||
Sbjct 232 AAACAAGAAAGGAGCGGAAAAAGCCCTAGCTGTAGCGAAACAACGCTTGCTGTGGAGTTA 291
Query 301 CCAGAGGATCTAGTAGAAGAGATTCTTCACCGTCTTCCGGTGAAATATTTGGTAAGATTG 360
|| || | ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 292 CCGGATGTTCTAGTAGAAGAGATTCTTCAACGCCTTCCGGTGAAATATTTGGTAAGATTG 351
Query 361 AAATCAGTATCGAAAGTATGGAAATCATTGATTGAATCCAG-TCATCTAGCAGAGAAACA 419
|||||| |||| |||| ||||||||| |||||||||| | | |||||||||||||||||
Sbjct 352 AAATCAATATCAAAAGGATGGAAATCTTTGATTGAAT-CTGACCATCTAGCAGAGAAACA 410
Query 420 TCTCCGTCTCCTTGaaaaaaaGTATGGAGTCAAAGAGATGAAAATCACTGTTAAGTGGTC 479
||||||||| |||||||||||||||||| |||||||||| |||||||| ||| || ||||
Sbjct 411 TCTCCGTCTGCTTGAAAAAAAGTATGGACTCAAAGAGATAAAAATCACAGTTGAGCGGTC 470
Query 480 CACATCAAAAAGCATTTGTATAAAGTTTTTCTCAAGACGCAGTGGAATG---G------A 530
|||||| |||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 471 CACATCGAAAAGCATTTGTATCAAGTTTTTCTCAAGACGCAGTGGAATGAACGCAATCAA 530
Query 531 TAGTAATTCAGAAGGTCTTCTTCGAGTTCCTGGTTCTTGTAATGGTTTGGTCTGCGTCTA 590
|||| |||| || | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 531 TAGTGATTCCGATGATCTTCTTCGAGTTCCTGGTTCTTGTAATGGTTTGGTATGCGTCTA 590
Query 591 CGAGTTGGATTTGGTCTACATTTACCTACTCAACCCTATGACAGGTGTGACCCGGACACT 650
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 CGAGTTGGATTCGGTCTACATTTACCTACTCAACCCTATGACAGGTGTGACCCGGACACT 650
Query 651 TACTCCTCCTCGAGGTACCAAACTTTCAGTTGGATTTGG-ATCAGATATTGTTACAGGAA 709
||||||||||||||||||||||||||||||||||||||| || |||| |||| |||||||
Sbjct 651 TACTCCTCCTCGAGGTACCAAACTTTCAGTTGGATTTGGGAT-AGATGTTGTGACAGGAA 709
Query 710 CATACAAAGTGGTGGTTTTGTATGGCTTCGACAGAGTAGGAACTGTGGTTTTCGATCTCT 769
| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 710 CTTACAAAGTGATGGTTTTGTATGGCTTCGACAGAGTAGGAACTGTGGTGTTCGATCTCG 769
Query 770 CCACTAGTAAGTGGAGGCGGAGATACAAAACCGCTGGTCCAATGCCACTTTCTTGCATTC 829
||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 770 ACACTAATAAGTGGAGGCAGAGATACAAAACTGCTGGTCCAATGCCACTTTCTTGCATTC 829
Query 830 CAACCCCTGAAAGAAACCCAGTTTTT 855
|||||||||||||||||||||| |||
Sbjct 830 CAACCCCTGAAAGAAACCCAGTCTTT 855
Score = 492 bits (266), Expect = 4e-138
Identities = 320/344 (93%), Gaps = 11/344 (3%)
Strand=Plus/Plus
Query 856 ATACTAGTCATGGATCTTCACACTGAAAAGTTCCGTACTTTGTCGCAACCCAATGACATG 915
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 901 ATACTAGTCATGGATCTTCACACGGAAAAGTTCCGCACTTTGTCACAACCCAATGACATG 960
Query 916 GATGATGTTGATGTGTCCTCGGGTTACATTTACATGTGGAGTCTCGAGGACCGGCTCTGT 975
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 961 GATGATGTTGATGTGTCCTCAGGTTACATTTACATGTGGAGTCTCGAGGACCGTCTCTGT 1020
Query 976 GTCTCTAAT-TTCAGACAAGGTTTGCATTCTTACGTGTGGGTTCTTGTGCAGGACGAGCT 1034
|| |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1021 GTATCTAATGTT-AGACAAGGTTTGCATTCCTACGTGTGGGTTCTTGTGCAGGACGAGCT 1079
Query 1035 TAGTGAGA-G----A-A---CTAGATTTAATCTCCTAGGTCATGTCCTTCCTCCACTAAG 1085
|||||||| | | | |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1080 TAGTGAGAAGTGGGAGAGAACTAGATTTAATCTCCTAGGTCATGTCTTTCCTCCATTAAG 1139
Query 1086 CTTGGATTCTGCTTGGTTTTCACAGACCTTGGTTTCTCCTTACCAGTCGTCGTCTTCAAC 1145
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1140 CTTGAATTCTGCTTGGTTTTCACAGACCTTGGTTTCTCCTTACCAGTTGTCGTCTTCAAC 1199
Query 1146 ATGTATCGGTTCTAGACAAAGACAGAATAGGACCTCTGCACTAT 1189
|||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1200 ATGTATCGGTTCTAGACAAAGACAGAATAGTACCTCTGCGCTAT 1243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5