BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913172 Length=1197 Score E Sequences producing significant alignments: (Bits) Value AT1G33530.1 | Symbols: | F-box family protein | chr1:12159884-... 1142 0.0 > AT1G33530.1 | Symbols: | F-box family protein | chr1:12159884-12161314 FORWARD LENGTH=1326 Length=1326 Score = 1142 bits (618), Expect = 0.0 Identities = 787/866 (91%), Gaps = 22/866 (3%) Strand=Plus/Plus Query 1 ATGGCTTTTTCAATTGTGAAACTAGTGAACTTGAAGAGAAAGAAGTGGCAGTCGAAGCTC 60 ||| |||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1 ATGACTTTTTCAATTGAGAAACTGGTGGACTTGAAGAGAAAGAAGTGGCAGTCGAAGCTC 60 Query 61 CAAAATACAAAGAAACAGGTTTTAGGCCGATGTTTAGCAAATTTTAGCAGACTTTTGAGT 120 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 61 CAAAATACAAAGAAACAGGTTTTAGGCCGATGTTTAACAAATTTTAGCAGACTTTTGAGT 120 Query 121 TTTCGTAAGAAACAAGAAAGGAACGGAAAAAACCCTAGATGTAGCAAAACCACGCTTGCT 180 ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||| Sbjct 121 TTTCGTAAGAAACAAGAAACAAACGGAAAAAGCCCTAGATGTAGCAAAGCCACGCTTGCT 180 Query 181 GTTGTTGTTCATCCAATATCTAGTGCTATACAAGAGGATCTTGTTGAAGACATATGTAAG 240 |||||||||||||||| | | ||| ||| ||| || ||| || || || ||||| Sbjct 181 GTTGTTGTTCATCCAACAGCCAGTACTACACATGATGAT-TT-TT-------TACGTAAG 231 Query 241 AAACAAGAAAGGAGCGGAAAAAGCCCTAGTTATAGCGAAACAACGCTTCCTGTTGAGTTA 300 ||||||||||||||||||||||||||||| | |||||||||||||||| |||| |||||| Sbjct 232 AAACAAGAAAGGAGCGGAAAAAGCCCTAGCTGTAGCGAAACAACGCTTGCTGTGGAGTTA 291 Query 301 CCAGAGGATCTAGTAGAAGAGATTCTTCACCGTCTTCCGGTGAAATATTTGGTAAGATTG 360 || || | ||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 292 CCGGATGTTCTAGTAGAAGAGATTCTTCAACGCCTTCCGGTGAAATATTTGGTAAGATTG 351 Query 361 AAATCAGTATCGAAAGTATGGAAATCATTGATTGAATCCAG-TCATCTAGCAGAGAAACA 419 |||||| |||| |||| ||||||||| |||||||||| | | ||||||||||||||||| Sbjct 352 AAATCAATATCAAAAGGATGGAAATCTTTGATTGAAT-CTGACCATCTAGCAGAGAAACA 410 Query 420 TCTCCGTCTCCTTGaaaaaaaGTATGGAGTCAAAGAGATGAAAATCACTGTTAAGTGGTC 479 ||||||||| |||||||||||||||||| |||||||||| |||||||| ||| || |||| Sbjct 411 TCTCCGTCTGCTTGAAAAAAAGTATGGACTCAAAGAGATAAAAATCACAGTTGAGCGGTC 470 Query 480 CACATCAAAAAGCATTTGTATAAAGTTTTTCTCAAGACGCAGTGGAATG---G------A 530 |||||| |||||||||||||| ||||||||||||||||||||||||||| | | Sbjct 471 CACATCGAAAAGCATTTGTATCAAGTTTTTCTCAAGACGCAGTGGAATGAACGCAATCAA 530 Query 531 TAGTAATTCAGAAGGTCTTCTTCGAGTTCCTGGTTCTTGTAATGGTTTGGTCTGCGTCTA 590 |||| |||| || | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 531 TAGTGATTCCGATGATCTTCTTCGAGTTCCTGGTTCTTGTAATGGTTTGGTATGCGTCTA 590 Query 591 CGAGTTGGATTTGGTCTACATTTACCTACTCAACCCTATGACAGGTGTGACCCGGACACT 650 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591 CGAGTTGGATTCGGTCTACATTTACCTACTCAACCCTATGACAGGTGTGACCCGGACACT 650 Query 651 TACTCCTCCTCGAGGTACCAAACTTTCAGTTGGATTTGG-ATCAGATATTGTTACAGGAA 709 ||||||||||||||||||||||||||||||||||||||| || |||| |||| ||||||| Sbjct 651 TACTCCTCCTCGAGGTACCAAACTTTCAGTTGGATTTGGGAT-AGATGTTGTGACAGGAA 709 Query 710 CATACAAAGTGGTGGTTTTGTATGGCTTCGACAGAGTAGGAACTGTGGTTTTCGATCTCT 769 | ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 710 CTTACAAAGTGATGGTTTTGTATGGCTTCGACAGAGTAGGAACTGTGGTGTTCGATCTCG 769 Query 770 CCACTAGTAAGTGGAGGCGGAGATACAAAACCGCTGGTCCAATGCCACTTTCTTGCATTC 829 ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||| Sbjct 770 ACACTAATAAGTGGAGGCAGAGATACAAAACTGCTGGTCCAATGCCACTTTCTTGCATTC 829 Query 830 CAACCCCTGAAAGAAACCCAGTTTTT 855 |||||||||||||||||||||| ||| Sbjct 830 CAACCCCTGAAAGAAACCCAGTCTTT 855 Score = 492 bits (266), Expect = 4e-138 Identities = 320/344 (93%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 856 ATACTAGTCATGGATCTTCACACTGAAAAGTTCCGTACTTTGTCGCAACCCAATGACATG 915 ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 901 ATACTAGTCATGGATCTTCACACGGAAAAGTTCCGCACTTTGTCACAACCCAATGACATG 960 Query 916 GATGATGTTGATGTGTCCTCGGGTTACATTTACATGTGGAGTCTCGAGGACCGGCTCTGT 975 |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 961 GATGATGTTGATGTGTCCTCAGGTTACATTTACATGTGGAGTCTCGAGGACCGTCTCTGT 1020 Query 976 GTCTCTAAT-TTCAGACAAGGTTTGCATTCTTACGTGTGGGTTCTTGTGCAGGACGAGCT 1034 || |||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1021 GTATCTAATGTT-AGACAAGGTTTGCATTCCTACGTGTGGGTTCTTGTGCAGGACGAGCT 1079 Query 1035 TAGTGAGA-G----A-A---CTAGATTTAATCTCCTAGGTCATGTCCTTCCTCCACTAAG 1085 |||||||| | | | |||||||||||||||||||||||||| |||||||| |||| Sbjct 1080 TAGTGAGAAGTGGGAGAGAACTAGATTTAATCTCCTAGGTCATGTCTTTCCTCCATTAAG 1139 Query 1086 CTTGGATTCTGCTTGGTTTTCACAGACCTTGGTTTCTCCTTACCAGTCGTCGTCTTCAAC 1145 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1140 CTTGAATTCTGCTTGGTTTTCACAGACCTTGGTTTCTCCTTACCAGTTGTCGTCTTCAAC 1199 Query 1146 ATGTATCGGTTCTAGACAAAGACAGAATAGGACCTCTGCACTAT 1189 |||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1200 ATGTATCGGTTCTAGACAAAGACAGAATAGTACCTCTGCGCTAT 1243 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58784838195 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5