BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913196
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33790.2 | Symbols: | jacalin lectin family protein | chr1:... 850 0.0
AT5G28520.1 | Symbols: | Mannose-binding lectin superfamily pr... 364 9e-100
> AT1G33790.2 | Symbols: | jacalin lectin family protein | chr1:12256664-12260605
FORWARD LENGTH=2536
Length=2536
Score = 850 bits (460), Expect = 0.0
Identities = 583/644 (91%), Gaps = 2/644 (0%)
Strand=Plus/Plus
Query 17 AAGCAAAAGGCGTAAAAGGAGGCAATCAGTGGGATGATTTAGCTGACCATGATCATGTAA 76
|||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 AAGCAAAAGGTGGAAACGGAGGCAATCAGTGGGATGATTTAGCTGACCATGATCATGTAA 1116
Query 77 CAAAGATATATGTACAAGATGGTC-GCAAAGGTATTCAGTACGTCAAGTTTGATTATGTC 135
||||||| |||||||||| ||||| | ||||||| || |||||||||||||||||||||
Sbjct 1117 CAAAGATTTATGTACAAGGTGGTCAG-GAAGGTATACAATACGTCAAGTTTGATTATGTC 1175
Query 136 AAGAATGGTCAACCACAAACTGGATCACTCCATGGTCTCATGGGTAGACGATTGATGAAA 195
||||||||||||||||||| ||||||| ||||||||||| |||||||| |||| | | ||
Sbjct 1176 AAGAATGGTCAACCACAAAGTGGATCAGTCCATGGTCTCTTGGGTAGAGGATTCACGCAA 1235
Query 196 AAGTTTGAGATTGATCCAGCCAGTGAGTATCTTGTATCCGTTGAGGGTTGGTATGATGAC 255
| |||||||||||||||| ||| ||| ||||||||||||||||||||| ||||||||
Sbjct 1236 ACGTTTGAGATTGATCCAACCAATGAACATCTTGTATCCGTTGAGGGTTACTATGATGAA 1295
Query 256 GCTAAGGGTATAATTCAAACACTTAAATTCAAAACCAACAAGAAGACTTCTGATATGATA 315
|||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1296 TCTAAGGGTTTGGTTCAAGGGCTTAAATTCAAAACCAACAAGAAGACTTCTGACATGATA 1355
Query 316 GGATACAATGCAACTGGTTTGAAGTTTTCACTTAAAGTTAACGGAAAAAAGATAATTGGC 375
|||||| ||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1356 GGATACGATGAAAATGGTTTGAAGTTTTCACTTGAAGTTAACGGAAAAAAGATAATTGGC 1415
Query 376 TTCCATGGATATGCTGATACTAATCTCAACTCTCTTGGAGCTTATTTCACAACGGCTCCT 435
||||||||||||||| | ||| |||| ||||||||||||||||||||| ||||||||||
Sbjct 1416 TTCCATGGATATGCTCAGACTTATCTAAACTCTCTTGGAGCTTATTTCGTAACGGCTCCT 1475
Query 436 CCTACTAAATTTGACTGTCAAGGTGGTTCAGGATCCCAGCTTTGGGATGATGGTTCTAAC 495
|||||||||||||||| ||||||||||||||| |||| ||||||||||| ||| |||||
Sbjct 1476 CCTACTAAATTTGACTACCAAGGTGGTTCAGGAGCCCAACTTTGGGATGACGGTACTAAC 1535
Query 496 TACAGTGGTGTGAGAAAGGTTTCCTTTGCGTTAGATGACACCGAGATAAGGAAAATCAAG 555
|||| ||||||||||||| |||||||||||||||||| || ||||||||| |||||| |
Sbjct 1536 TACAATGGTGTGAGAAAGATTTCCTTTGCGTTAGATGCCAATGAGATAAGGCAAATCAGG 1595
Query 556 ATTAATTATGACAAAGGTGGCTTAGTGGAAAGACGTGAGTACGGGGGTAACGTAGGACGA 615
||| |||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 1596 ATTGATTATGACAAAGGTGGCTTAATTGAAAGACGAGAGTACGGGGGTAACGTAGGACGA 1655
Query 616 CAAGAGGAGTTTGTGGTCGACTATCCAAGTGAATACATCATATA 659
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1656 CAAGAGGAGTTTGTGGTCGACTATCCAAGTGAATATATCATATA 1699
Score = 710 bits (384), Expect = 0.0
Identities = 588/682 (86%), Gaps = 31/682 (5%)
Strand=Plus/Plus
Query 1 ATGGCCCAGAAGTTGGAAGCAAAAGGCGTAAAAGGAGGCAATCAGTGGGATGATTTAGC- 59
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 126 ATGGCCCAGAAGTTGGAAGCAAAAGGCGGGAAAGGAGGCAATCAGTGGGATGATTTA-CT 184
Query 60 TGACCATGATC-ATGTAACAAAGATAT-ATGTACAAGATGGTCGCAAAGGTATTCAGTAC 117
||||||||| | || | ||||||| | ||||||||| ||||| |||| |||||||||
Sbjct 185 TGACCATGA-CAATATCGCAAAGAT-TCATGTACAAGGTGGTCATGAAGGGATTCAGTAC 242
Query 118 GTCAAGTTTG---A--TT-A---TG------TCAAGAATGGTCAACCACAAAC-TGGATC 161
|||||||||| | || | || |||||| ||||||||| ||||| ||||||
Sbjct 243 GTCAAGTTTGATTATGTTAAGTTTGATAATCTCAAGATTGGTCAACC-CAAACTTGGATC 301
Query 162 ACTCCATGGTCTCAT-GGGTAGACGATTGATGAAAAAGTTTGAGATTGAT-CCAGCCAGT 219
| ||||||||||| | | ||| | |||| | | ||| ||||||||||||| ||| |||||
Sbjct 302 AATCCATGGTCTC-TCGCGTAAAGGATTCACGCAAACGTTTGAGATTGATCCCA-CCAGT 359
Query 220 GAGTATCTTGTATCCGTTGAGGGTTGGTATGATGACGCTAAGGGTATAATTCAAACACTT 279
|||||| ||||||||||||| |||| |||||||| |||||||||| |||||| |||||
Sbjct 360 GAGTATATTGTATCCGTTGAAGGTTACTATGATGAATCTAAGGGTATTATTCAAGCACTT 419
Query 280 AAATTCAAAACCAACAAGAAGACTTCTGATATGATAGGATACAATGCAACTGGTTTGAAG 339
||||||||||||||||||||||||||||| |||||||||||| ||| || ||||||||||
Sbjct 420 AAATTCAAAACCAACAAGAAGACTTCTGACATGATAGGATACGATGAAAATGGTTTGAAG 479
Query 340 TTTTCACTTAAAGTTAACGGAAAAA-AGATAATTGGCTTCCATGGATATGCTGATACTAA 398
|| |||||| ||||||| |||||| | ||||||||||| || |||| |||||| |||||
Sbjct 480 TTCTCACTTGAAGTTAAGGGAAAAGCA-ATAATTGGCTTTCACGGATTTGCTGACACTAA 538
Query 399 TCTCAACTCTCTTGGAGCTTATTTCACAACGGCTCCTCCTACTAAATTTGACTGTCAAGG 458
||| || |||||||||||||||||| || |||||||||| ||||||||||||| ||||||
Sbjct 539 TCTAAATTCTCTTGGAGCTTATTTCGCACCGGCTCCTCCAACTAAATTTGACTATCAAGG 598
Query 459 TGGTTCAGGATCCCAGCTTTGGGATGATGGTTCTAACTACAGTGGTGTGAGAAAGGTTTC 518
|||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 599 TGGTTCAGGAGCCCAACTTTGGGATGATGGTAGTAACTACAATGGTGTGAGAAAGGTTTC 658
Query 519 CTTTGCGTTAGATGACACCGAGATAAGGAAAATCAAGATT-AATTATGACAAAGGTGGCT 577
||| ||||||||||||||||||||||| |||||| |||| ||| |||||||| ||||||
Sbjct 659 TTTTTCGTTAGATGACACCGAGATAAGGCAAATCAGGATTGAAT-ATGACAAAAGTGGCT 717
Query 578 TAGTGGAAAGACGTGAGTACGGGGGTAACGTAGGACGACAAGAGGAGTTTGTGGTCGACT 637
|||| |||| |||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 718 TAGTAGAAAAACGTGAGTACGGAAGTAACGTAGGACGACAAGAGGAGTTTGTGCTGGACT 777
Query 638 ATCCAAGTGAATACATCATATA 659
|||| | |||||||||||||||
Sbjct 778 ATCCGACTGAATACATCATATA 799
Score = 617 bits (334), Expect = 6e-176
Identities = 413/448 (92%), Gaps = 17/448 (4%)
Strand=Plus/Plus
Query 831 TCTTCCTCCTTCCGCTGAAACACTACAAGCAAAAGGTGGTGAAGGAGGAGATCCATGGAA 890
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1913 TCTTCCTCCTTCCGCTGAAACACTACAAGCAAAAGGAGGTGAAGGAGGAGATCCATGGAG 1972
Query 891 CGATGGTGTTTTCAACGGTGTGAGGAAAATATATGTAGGACAAGGTGGAAATGGTGTCAG 950
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1973 CGATGGTGTTTTCAACGGTGTGAGGAATATATATGTAGGACAAGGTGAAAATGGTGTCAG 2032
Query 951 TGCCGTCAAGTTTGTGTATGATAAGGACTCTCACGTGGCTGAAGGGAATGATCATGGGAA 1010
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2033 TGCCGTCAAGTTTGTGTATGATAAAGACTCTCAGGTGGCTGAAGGGAATGATCATGGGAA 2092
Query 1011 -CCAAACACTTCTTGGATACGAGGAG---AA--T--A-T--CCTAGTGAGTACATCACCG 1059
|||| |||||||||||||||||||| || | | | || ||||| |||||||||
Sbjct 2093 ACCAA-CACTTCTTGGATACGAGGAGTTCAAGCTTGAATATCCGAGTGAATACATCACCA 2151
Query 1060 CGGTGGAAG-TT-T---GACAAAATATTTGGAAGTGGAGGCGGAGTTATAACCATGCTTA 1114
||||||||| || | |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2152 CGGTGGAAGGTTGTTTTGACAAAATATTTGGAAGTGGAGGCGGCGTTATAACCATGCTTA 2211
Query 1115 AGTTCAAGACCAACAAACGAATCTCTCCACCGTTTGGACTCGAAACAACATCAAGCTTTG 1174
||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||
Sbjct 2212 AGTTCAAGACCAACAAACGAACCTCTCCGCCGTTTGGACTCGAAACAACATCAAACTTTG 2271
Query 1175 TTCTTGGGAAGGAAGGTTATAAAATTGTAGGGTTCCACGGAAAATCTAGTCATGAGCTTC 1234
|||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 2272 TTCTCGGGAAGGAAGGTTACAAAATTGTAGGGTTCCACGGAACATCTAGTCATGAGCTTC 2331
Query 1235 ACCAGCTCGGGGTATATGTCGTGCCCAT 1262
| |||||||||||||||||| |||||||
Sbjct 2332 ATCAGCTCGGGGTATATGTCATGCCCAT 2359
Score = 174 bits (94), Expect = 2e-42
Identities = 127/143 (89%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 665 GGATAACCTCTCCGATATTTGGAAAGGTTGCTACTCGCAAATTCGTTTTTGAAAGCAACG 724
||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |
Sbjct 1777 GGAGAACCTCTCCGATATTTGGAAAGGTTGCTGCTCGTAAATTCGTGTTTGAAAGCAATG 1836
Query 725 GTAGTGCCCTTATCGGGTTCCATGGACGAGCAGCTGTTGCTCTAGATGCCATCGGAGCTT 784
||||||| ||||||||||| ||||| || || |||| ||| ||||||||||||||||||
Sbjct 1837 GTAGTGCTCTTATCGGGTTTCATGGGCGGGCTGCTGCTGCAGTAGATGCCATCGGAGCTT 1896
Query 785 -TTGTCTCCCCGTTTATTCTTCC 806
|| |||||| ||||||||||||
Sbjct 1897 ATT-TCTCCCGGTTTATTCTTCC 1918
> AT5G28520.1 | Symbols: | Mannose-binding lectin superfamily
protein | chr5:10493110-10494852 FORWARD LENGTH=1362
Length=1362
Score = 364 bits (197), Expect = 9e-100
Identities = 372/452 (82%), Gaps = 29/452 (6%)
Strand=Plus/Plus
Query 1 ATGGCCCAGAAGTTGGAAGCAAAAGGCGTAAAAGGAGGCAAT-CAGTGGGATGATTTAGC 59
||||| |||||||| ||||||| | | || | ||||| | ||||||||||||| | |
Sbjct 1 ATGGCTCAGAAGTTAGAAGCAATA-G-GT---A-GAGGC-CTCCAGTGGGATGATTCATC 53
Query 60 TGACCATGATC-ATGTAACAAAGA-TATATGTACAAGATGGTCGCAAAGGTATTCAGTAC 117
||||||||| | |||||||||||| | | ||||| || |||||| |||| |||||||||
Sbjct 54 TGACCATGA-CAATGTAACAAAGATTCT-TGTACGAGGTGGTCGTGAAGGCATTCAGTAC 111
Query 118 GTCAAGTTTGATTATGTCAAGAATGGTCAACCACAAACTGGATCACTCCATGGTCTCAT- 176
|||||||||||||||||||||| ||| ||||| |||||||||| | ||||||||||| |
Sbjct 112 GTCAAGTTTGATTATGTCAAGAGTGGGCAACCCCAAACTGGATTAATCCATGGTCTC-TC 170
Query 177 GGGTAGACGATTGA-TGA-A-AAA-GTTTGAGATTGATCCAGCCA-G-TGAGTATCTTGT 230
||||||| || || | | | ||| ||||||||||||| || | | ||| |||| ||
Sbjct 171 GGGTAGAGGA-GGATTCACACAAACGTTTGAGATTGAT-CA-AAAGGATGAACATCTAGT 227
Query 231 ATCCGTTGAGGGTTGGTATGATGACGCTAAGGGTATAATTCAAACACTTAAATTCAAAAC 290
||| |||||||| | ||||||| | |||||||| | || ||| ||||||||||||||||
Sbjct 228 ATCTGTTGAGGGCTACTATGATGTCACTAAGGGTGTGATCCAAGCACTTAAATTCAAAAC 287
Query 291 CAACAAGAAGACTTCTGATATGATAGGATACAATG-CAACTGGT-TTGAAGTTTTCACTT 348
||||||||||||||| || |||||||||||| ||| || | ||| || ||| ||||||||
Sbjct 288 CAACAAGAAGACTTCGGAGATGATAGGATACGATGACA-CGGGTATT-AAGCTTTCACTT 345
Query 349 AAAGTTAACGGAAAAAAGATAATTGGCTTCCATGGATATGCTGATACTAATCTCAA-CTC 407
|||| || || ||||||||||||||||||||||||||||| || ||||| || || |||
Sbjct 346 GAAGTCAAGGGTAAAAAGATAATTGGCTTCCATGGATATGCCGAGACTAA-CTTAAACTC 404
Query 408 TCTTGGAGCTTATTTCACAACGGCTCCTCCTA 439
||||||||||||||| |||||| || |||||
Sbjct 405 TCTTGGAGCTTATTTTACAACGACTGGTCCTA 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5