BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913197
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33800.1 | Symbols: | Protein of unknown function (DUF579) ... 1434 0.0
AT4G09990.1 | Symbols: | Protein of unknown function (DUF579) ... 531 6e-150
> AT1G33800.1 | Symbols: | Protein of unknown function (DUF579)
| chr1:12261419-12262717 FORWARD LENGTH=1216
Length=1216
Score = 1434 bits (776), Expect = 0.0
Identities = 856/895 (96%), Gaps = 3/895 (0%)
Strand=Plus/Plus
Query 1 ATGAGAACCAAATCTCAATCTTCCCTTAATCTCAAGGTCATATTCATAGGTTCCTCAATC 60
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 62 ATGAGGACCAAATCTCCATCTTCTCTTAATCTCAAGGTCATATTCATAGGTTCCTCAATC 121
Query 61 TTGATCTTGCTCATCATTTACTTAGCAAGATCAAACATCTCTTCCTCCTCCTCAAAGCCA 120
||||||||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 122 TTGATCTTGATCATCATCTACTTAGCAAGATCAAACATCTCTTCTTCCTCTTCAAAGCCA 181
Query 121 ATCTCCAAAACTAATCTCTCCCAAGAAGAAGAAGAAACTCAACACAAGCCAGAAGGATGT 180
||||||||||| ||||||||||||||||||||||||||||| || || | ||||||||||
Sbjct 182 ATCTCCAAAACAAATCTCTCCCAAGAAGAAGAAGAAACTCAGCATAAACAAGAAGGATGT 241
Query 181 CCAACGACGACACAACAATGCACAAAGATGCCACTTTCTTTATCCGATGCATTGGTTCAT 240
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CCAAC-A--ACACAACAATGCACAAAGATGCCACTTTCTTTATCCGATGCATTGGTTCAT 298
Query 241 TACGTTACCAGTAACGTCACTCCACAACAAACATTTGATGAAGTCTCTGTCTCAAAGAGA 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TACGTCACTAGTAACGTCACTCCACAACAAACATTTGATGAAGTCTCTGTCTCAAAGAGA 358
Query 301 GTCTTGGACAAGAAGTCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGTCACGACAGCTTA 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 359 GTCTTGGACAAGAAGTCTCCTTGTAACTTCCTTGTCTTTGGCTTAGGTCACGACAGTTTA 418
Query 361 ATGTGGGCATCTCTTAACCATGGTGGTCGTACCTTGTTTATTGAAGAAGACGAGGCATGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 419 ATGTGGGCATCTCTTAACCATGGTGGTCGTACCTTGTTTATTGAAGAAGACCAAGCTTGG 478
Query 421 ATTTCGATAGTAACTAAGAAGTTCCCAAACCTGGAATCTTACCACGTAGTTTACGACACA 480
||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 479 ATTGCGATAGTAACTAAGAAGTTCCCAAACTTAGAATCTTACCACGTAGTTTACGACACA 538
Query 481 AAAGTCAAAGATTCAGACAAACTAATGGAACTAGGAAGATCTGAAGAGTGTAGATCTGTG 540
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 539 AAAGTCAAAGATTCAGACAAGCTGATGGAACTAGGAAGATCAGAAGAGTGTAGATCTGTG 598
Query 541 TCTGATCCAAGAAACTCGAAATGTGATCTTGCGTTGAAAGATTTCCCGGCGGACTTTTAC 600
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTGATCCGAGAAACTCCAAATGTGATCTTGCGTTGAAAGATTTCCCGGCGGACTTTTAC 658
Query 601 GAGACGAAATGGGATCTGATTATGGTTGATGCTCCAACTGGTTATCATGAAGAAGCTCCG 660
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 659 GAGACGAAATGGGATCTGATCATGGTTGATGCACCAACTGGTTACCATGAAGAAGCTCCG 718
Query 661 GGGAGGATGAGTGCTATTTACACGGCGGGGCTTTTGGCTCGTAACCGTGAAGATGGTGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGGAGGATGAGTGCTATTTACACGGCGGGGCTTTTGGCTCGTAACCGTGAAGATGGTGAA 778
Query 721 ACTGATGTTTTTGTTCATGACGTTAACCGTCCGGTGGAAGATGAGTTCTCGGCGACTTTC 780
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACTGACGTTTTTGTTCACGACGTTAACCGTCCGGTGGAAGATGAGTTCTCGGCGACTTTC 838
Query 781 TTGTGTAAAGGTTATATGAGGGAGCAAAATGGGAGGCTTAGACATTTTACTATTCCTAGT 840
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 839 TTGTGTAAAGGTTATATGAGGGAGCAAAATGGGAGACTTAGACATTTTACTATTCCTAGT 898
Query 841 CATCGGGCTCGAGCTGGACGACCCTTTTGTCCGGTGGAGGTTGATCGCCGCCGTT 895
||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 899 CATCGGGCTCGTGCTGGACGACCTTTTTGTCCGGTGGAAGTTGATCGCCGCCGTT 953
> AT4G09990.1 | Symbols: | Protein of unknown function (DUF579)
| chr4:6258880-6260073 REVERSE LENGTH=1112
Length=1112
Score = 531 bits (287), Expect = 6e-150
Identities = 572/706 (81%), Gaps = 33/706 (5%)
Strand=Plus/Plus
Query 191 CACAACAATGCA-CAAAGATG-CCACTTTCTTTATCCGATGCATTGGTTCATTACGTTA- 247
|||||||||||| |||| || |||| |||| ||||||| ||||||||||| || || |
Sbjct 173 CACAACAATGCACCAAA-TTGCCCAC-TTCTCTATCCGACGCATTGGTTCACTATGTCAC 230
Query 248 C-CAGTAACG-TCACTCCACAACAAACATTTGATGAAGTCTCTGTCTCAAAGAGAGTCTT 305
| ||| | | |||| ||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 231 CTCAG--A-GATCACACCACAACAAACGTTTGATGAAGTCTCAGTCTCAAAGAGAGTCTT 287
Query 306 GGACAAGAAGTCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGTCACGACAGCTTAATGTG 365
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 288 GGACAAGAAGTCTCCTTGTAACTTCCTCGTCTTTGGCTTAGGACACGATAGCTTGATGTG 347
Query 366 GGCATCTCTTAACCATGGTGGTCGTACCTTGTTTATTGAAGAAGACGAGGCATGGATTTC 425
||||||||| || || ||||| || || ||||| | || ||||| || || ||||||
Sbjct 348 GGCATCTCTCAATCACGGTGGACGCACTTTGTTCCTCGAGGAAGATGAAGCTTGGATTGA 407
Query 426 GATAGTAACTAAGAAGTTCCCAAACCTGGAATCTTACCACGTAGTTTACGACACAAAAGT 485
|| |||||||||||| ||||||||| ||||||| |||||||| || ||||||||||||||
Sbjct 408 GACAGTAACTAAGAAATTCCCAAACTTGGAATCCTACCACGTCGTATACGACACAAAAGT 467
Query 486 CAAAGATTC-AGACAAACTAATGGAACTAG-GAAGATCTGAAGAGTGTAGATCTGTGTCT 543
|||||||| | |||| || ||||| ||| || || | || || || | | | ||||||
Sbjct 468 GAAAGATTCCA-ACAAGCTTATGGAGCTAAAGA-GAACAGAGGATTGCAAAGCCGTGTCT 525
Query 544 GATCCAAGAAACTCGAAATGTGATCT-TGCGT-TGAAAGATTTCCCGGCGGACTTTTACG 601
||||| ||| | || ||||||| ||| | | | | || | ||| || || ||| | ||||
Sbjct 526 GATCCTAGAGATTCCAAATGTGCTCTGT-C-TCTCAAGGGTTTTCCAGCTGACGTGTACG 583
Query 602 AGACGAAATGGGATCTGATTATGGTTGATGCTCCAACTGGTTATCATGAAGAAGCTCCGG 661
||||| |||||||| |||| ||||| |||||||| |||||||| || || |||||||| |
Sbjct 584 AGACGCAATGGGATGTGATAATGGTCGATGCTCCCACTGGTTACCACGATGAAGCTCCAG 643
Query 662 GGAGGATGAGTGCTATTTACACGGCGGGGCTT-TTGGCTCGTAACCGTGAAGATGGTGA- 719
|||||||||| ||||||||||| ||||| || ||||||||||||||| | || ||||
Sbjct 644 GGAGGATGAGCGCTATTTACACTGCGGGT-TTATTGGCTCGTAACCGTTATGACGGTGGG 702
Query 720 -A-ACTGATGTTTTTGTTCATGACGTTAACCGTCCGGTGGAAGATGAGTTCTCGGCGACT 777
| ||||||||||| ||||| || ||||||| |||||||| || |||||||||| | |
Sbjct 703 GAGACTGATGTTTTCGTTCACGATATTAACCGGCCGGTGGAGGACGAGTTCTCGGTGGCG 762
Query 778 TTCTTGTGTAAAGGTTATATGAGGGAGCAA-AATGGGAGGCTTAGACATTTTA-CTATTC 835
||||||||| ||| || |||| ||||| || || || ||||| ||||| | | || |
Sbjct 763 TTCTTGTGTGGAGGGTACATGAAAGAGCAGCAA-GGAAGACTTAGGCATTTCAAC-ATCC 820
Query 836 CTAGTCATCGGGCTCGAGCT--GG-ACGACCCTTTTGTCCGGTGGA 878
|||| || |||||| |||| || || ||| |||||||||| |||
Sbjct 821 CTAGCCACCGGGCT--AGCTTCGGTAC-ACCGTTTTGTCCGGCGGA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5