BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913200 Length=180 Score E Sequences producing significant alignments: (Bits) Value AT2G01800.1 | Symbols: | COP1-interacting protein-related | ch... 182 1e-45 AT4G00580.1 | Symbols: | COP1-interacting protein-related | ch... 165 1e-40 AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase... 110 6e-24 > AT2G01800.1 | Symbols: | COP1-interacting protein-related | chr2:343766-345254 REVERSE LENGTH=915 Length=915 Score = 182 bits (98), Expect = 1e-45 Identities = 118/128 (92%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26 TTGAGAAAGAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 85 ||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 740 TTGAGAACGAAACTGAGATGAGTGCCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCTG 799 Query 86 AGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCAAGACTCCGGCTAAAGTAGATGCTC 145 |||||||||| |||||||||||| ||||||||| |||||||||| |||||| ||||| || Sbjct 800 AGAAGCCTAAAAAGAAAAAAAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGTC 859 Query 146 TAGTTGCT 153 |||||||| Sbjct 860 TAGTTGCT 867 > AT4G00580.1 | Symbols: | COP1-interacting protein-related | chr4:248713-250258 FORWARD LENGTH=954 Length=954 Score = 165 bits (89), Expect = 1e-40 Identities = 116/129 (90%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 26 TTGAGAAA-GAAACTGAGATGGGAACCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT 84 |||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 695 TTGA-AAACGAAACTGAGATGAGTGTCAAGGAAAAAGATGGTGATGAGGAGGCTAAATCT 753 Query 85 GAGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCAAGACTCCGGCTAAAGTAGATGCT 144 ||||||||||| |||||||| ||| ||||||||| |||||||||| |||||| ||||| | Sbjct 754 GAGAAGCCTAAAAAGAAAAATAGAGCAAAGAAAGTCAAGACTCCGACTAAAGAAGATGGT 813 Query 145 CTAGTTGCT 153 ||||||||| Sbjct 814 CTAGTTGCT 822 > AT1G56100.1 | Symbols: | Plant invertase/pectin methylesterase inhibitor superfamily protein | chr1:20980369-20983979 REVERSE LENGTH=699 Length=699 Score = 110 bits (59), Expect = 6e-24 Identities = 89/102 (87%), Gaps = 7/102 (7%) Strand=Plus/Plus Query 26 TTGAGAAA-GAAACTG-AGATGGGAAC-CAAGGAAAAAGATGGTGATGAGGAGGCTAAAT 82 |||| ||| ||||||| || | || | |||||||||||||||||||||||||||||||| Sbjct 440 TTGA-AAACGAAACTGAAG-T-CGATCTCAAGGAAAAAGATGGTGATGAGGAGGCTAAAT 496 Query 83 CTGAGAAGCCTAAGAAGaaaaaaaGATCAAAGAAAGGCAAGA 124 ||||||||||||| |||||||| || ||||||||| ||||| Sbjct 497 CTGAGAAGCCTAAAAAGAAAAAG-GAGCAAAGAAAGTCAAGA 537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7897312107 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5