BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913208
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33830.1 | Symbols: | P-loop containing nucleoside triphosp... 1014 0.0
> AT1G33830.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12279947-12281406
REVERSE LENGTH=678
Length=678
Score = 1014 bits (549), Expect = 0.0
Identities = 615/646 (95%), Gaps = 8/646 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGAGCAGGAATGGCCCGTTACAAACTTAATTCTCTTAGGTCGT-GCCGGAAATGG 59
||||||||||||||||| ||||||||||||||| ||||| |||||||| | || ||||||
Sbjct 1 ATGGCTGAGCAGGAATGCCCCGTTACAAACTTACTTCTCCTAGGTCGTAG-CGAAAATGG 59
Query 60 AAAAAGCAGCACCGGGAACACCATTATCGATCAAAAATATTTCGAAGTAAATTT-TCTTG 118
|||||||||||||||||||||||| |||| | |||||||||||||||||||||| | |||
Sbjct 60 AAAAAGCAGCACCGGGAACACCATCATCGGTGAAAAATATTTCGAAGTAAATTTGT-TTG 118
Query 119 G-AGAAGATATGGACCAGAGATGTAAGATGTTCAGAGCTGTAATAAAAGATGGCCCAATA 177
| || |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 119 GAAG-AGATATGGACCAGAGATGTAAGATGTTCAGAGCTTTAATAGAAGATGGCCCAATA 177
Query 178 ATCAATGTGATTGACACTCCTGGTTTGCTCGAGTCATCCGTGTCCGGAGACTATCTCAGT 237
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 ATCAATGTGATTGACACTCCTGGTTTGCTCGAGTCATCCGTGTCAGGAGACTATCTCAGT 237
Query 238 AAGGAAATAATGAATTGCTTAACTATGGCGGAAGAAGGAATACATGCTGTGTTGTTTGTT 297
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 AAGGAAATAATGAATTGCTTAACTATGGCGGAAGAAGGAATACATGCTGTATTGTTTGTT 297
Query 298 CTGTCTATAACGAATCGGATTTCACAGCGGGAGGAGTTTACATTTAACATATTGCAGCAC 357
||||||||||||||||| |||||||||||||||||||| |||||||| | |||||||||
Sbjct 298 CTGTCTATAACGAATCGAATTTCACAGCGGGAGGAGTTCACATTTAATACATTGCAGCAG 357
Query 358 ATATTTGATGATAAAATCCTTGACTATTTCATTGTGGTGTTCACTGGTGGTGACGAGTTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 ATATTTGATGATAAAATCCTTGACTATTTCATTGTGGTGTTCACTGGTGGTGATGAGTTG 417
Query 418 GAAGCAGACAACCAGACCTTGGACGATTATTTACGTGAAGGTTGCCCTGAATTTTTGACG 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GAAGCAGACAACCAGACCTTGGACGATTATTTACGTGAAGGTTGCCCTGAATTTTTGACG 477
Query 478 AGAGTTCTCAAACTATGTGGAGGACGAAAGGTACTGTTTAACAACAAGACAAAGGATAAA 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 AGAGTTCTCAAACTATGTGGAGGACGAAAGGTCCTGTTTAACAACAAGACAAAGGATAAA 537
Query 538 GGCAAGAGGACTAAGCAACTTAAGCAGCT-CTTAGCCCATGTCACGGATATTAGAAAGCA 596
|||||||||| |||||||||||| ||||| || ||| |||||||||||||| ||| ||||
Sbjct 538 GGCAAGAGGAATAAGCAACTTAACCAGCTTCT-AGCACATGTCACGGATATAAGACAGCA 596
Query 597 AAATGGTGGGATACCGTATACAGAAAATATGCACCGTAAGATCAAG 642
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAATGGTGGGATACCGTATACAGAAAATATGCACCGTAAGATCAAG 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5