BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913214

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G33920.1 | Symbols: ATPP2-A4, PP2-A4 | phloem protein 2-A4 |...   715    0.0  


> AT1G33920.1 | Symbols: ATPP2-A4, PP2-A4 | phloem protein 2-A4 
| chr1:12319905-12320870 FORWARD LENGTH=498
Length=498

 Score =  715 bits (387),  Expect = 0.0
 Identities = 462/499 (93%), Gaps = 2/499 (0%)
 Strand=Plus/Plus

Query  1    ATGC-ATCATACAATGATAATTTATGGACAGAAACACATGATCTACGCAAGGGATCTTAG  59
            |||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCAAT-ATACACTGATAATTTATGGACAGAAACACATGATCTACGCAAGGGATCTTAG  59

Query  60   CATAGCATGGTCGGACAACGAAGAGTATTGGTCATGGCTTCCTCTCCGGTATGATATATC  119
            ||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct  60   CATTGCATGGTCGGACAAAGACGAGTATTGGTCATGGCTGCCTCTCCGGTATGATATATC  119

Query  120  AAGCCAAGAACTCACTGATGCTGCTGTGCTAGAAGCAGTTTGTTGGTTAGATGTGAATGG  179
            |||| || |||||  ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct  120  AAGCGAAAAACTCGTTGATGCTGCTGTGCTAGAAGCAGTTTGTTGGCTAGATGTAAATGG  179

Query  180  AAAGTTCGACACGAGAGAACTGACACCAGCGACAACGTATGAGGTTGTGTATGTGGTGAA  239
            ||| || ||||||||||||||||||| || |||||| ||||||||||||||||| |||||
Sbjct  180  AAAATTTGACACGAGAGAACTGACACTAGAGACAACCTATGAGGTTGTGTATGTCGTGAA  239

Query  240  GTTAGAAGATACAGCTTATGGATGGAAAATACCAGTGAATCTGAAGTTAACCTTGCCCGA  299
            ||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct  240  GTTAGAAGATACAGCTTCTGGATGGAACATACCAGTGAATCTGAAGTTGACCTTGCCCGA  299

Query  300  TAGTAAGAAAAGGCCACAAGAGCGAAGCGTGTGCTTGAAAGAGCATATAGGGAAACGGTG  359
              |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  300  CGGTAAGAAAAGGCCACAAGAGCGAAGCATGTGCTTGAAAGAGCATATAGGGAAACGGTG  359

Query  360  GGTAGATATATCAGCTGGTGAGTTTGTAACGTCACTGGATAATGCAGGAGAGATCAGTTT  419
            | ||||||||||||| |||||||| || || ||||  |||||||| ||||||||||||||
Sbjct  360  GATAGATATATCAGCCGGTGAGTTCGTGACATCACCAGATAATGCTGGAGAGATCAGTTT  419

Query  420  CTCCATGTATGAGACCAAATCTGGCTGTTGGAAGAGAGGGCTCTTTGTTAAAGGTGTTGA  479
            |||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||
Sbjct  420  CTCCATGTATGAGACCAAATCTTGCTGTTGGAAGAGAGGGCTCTTTGTCAAATGTGTCGA  479

Query  480  AATTCGTCCGAAAAACTAA  498
            |||||||||||||||||||
Sbjct  480  AATTCGTCCGAAAAACTAA  498



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5