BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913215
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT1G33910.1 | Symbols: | P-loop containing nucleoside triphosp... 1437 0.0
> AT1G33910.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:12314904-12316258
FORWARD LENGTH=906
Length=906
Score = 1437 bits (778), Expect = 0.0
Identities = 867/910 (95%), Gaps = 5/910 (1%)
Strand=Plus/Plus
Query 1 ATGAGTGATCGGGAACAACCTTCAGCGTCCGAGCCAGTGAGAAACATAGTTCTTGTAGGG 60
||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 1 ATGAGTGATCGGGCACAACCGTCAGCGTCAGAGCCAGTGAGAAACATAGTTCTTGTGGGG 60
Query 61 CCTACCGGAAACGGGAAAAGCTCCACCGGGAACTCGCTCATCGGAAAAGAAGTGTTCACC 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 61 CCTACCGGAAACGGGAAAAGCTCCACCGGGAACTCTCTCATCGGAAAAGAAGTGTTCATC 120
Query 121 TCGGAAACCGTGGAATGTAAGACATGTAAAGCTAAAACACTAGATGGCCTGAAAATCAAT 180
| ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||
Sbjct 121 TTGGAAACCGTGGAATGTAAGACATGTAAAGCTAAGACACTAGATGGCCAGATAATCAAT 180
Query 181 TTGATTGACACTCCTGGTCTCTTTGATTTGTCCGTGTCTACGGATTATATGAACAAGGAG 240
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GTGATTGACACTCCTGGTCTCTTCGATTTGTCCGTGTCTACGGATTATATGAACAAGGAG 240
Query 241 ATCAGCAATTGCCTTACGCTCACGGAAGGAGGATTACATGCTGTGGTGTTAGTGCTATCT 300
|||| |||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 241 ATCATCAATTGCCTTACCCTCACGGATGGAGGGTTACATGCTGTGGTGTTAGTACTATCT 300
Query 301 GTGGGGACTGACATTTTAAAAGAGGAAGAGTCCGCACTTAACACA-TTACAGCTCCTTTT 359
|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 301 GTGGGGACTGACATTTTAAAAGAGGAAGAGGCCGCACTTAACA-AGTTACAGCTCCTTTT 359
Query 360 CGGAAGTAAAATCGTTGACTATTTGGTCGTTCTCTTCACTGGTGGTGATGTTTTGGAAAT 419
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGCAGTAAAATTGTTGACTATTTGGTCGTTCTCTTCACTGGTGGTGATGTTTTGGAAAA 419
Query 420 GGAAAACAAGACACTTGACGACTATTTGTCTAGAGGCTGCCCTGAATTTTTGAAGACAGT 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GGAAAACAAGACACTTGACGACTATTTGTCCAGAGGCTGCCCTGAATTTTTGAAGACAGT 479
Query 480 TCTTAGATTGTGTGGTGGAAGAAGGGTCTTGTTTAATAACAAGACTATGGATGAAGTAAA 539
||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 480 TCTTAGATTGTGTGGCGGAAGAAGGGTTTTGTTTAATAACAAGACTACGGATGAAGTCAA 539
Query 540 GAAGATCGAGCAAGTTAAACAGCTCCTTGCCCATGTCGAAGCCATTGAAAAGCTCAACGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 GAAGATCGAGCAAGTTAAACAGCTCCTTGCCCATGTCGAAGCCATTGAAAATCTCAACGG 599
Query 600 TGGGAAAGCGTTGTTTACTGAAGAAAATGATCTAAATGTAAAGAGACAAGGTGAGATGCT 659
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 TGGGAAAGCGTTGTTTACTGAAGAAAATGATCTAAATGAAAAGAGACAAGGTGAGATGCT 659
Query 660 TATGGAACAGCAAAAGGAGGTGCAATCTAAGAAGCCTGAGAAAACAGAGGTAGAAGAGTT 719
|||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||| |
Sbjct 660 TATGGAACAGGAAATGGAGGTACAATCTAAGAAGCCTGAGAACACAGAGGTAGAAGAGAT 719
Query 720 GAAGAAGCAGTTAGAAATAACGTATGGCCAACAAATGAGCATGATGGCACAGATGGTGGA 779
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 720 GAAGAAGCAGTTAGAAATATCGTATGGCCAACAAATGAACATGATGGCACAGATGGTGGA 779
Query 780 GGACACGCTAAAGGAGTCATCGGCGTCACATGAGAGAATGTTACTAGCACTGAGAGAGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 780 GGACACGCTAAAGGAGTCATCGGCGTCACATGAGAGAATGTTACTAGCACTGAAAGATAA 839
Query 840 AGTTGAGAGATCATACTTAGAAAATGAAGACATGCATAATGAGACCAAAAGAGTATGTAA 899
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 840 AGTTGAGAGATCATACTTAGAAAATGAAGACATGCATAATGAGACCAAAAGA-T--GTAA 896
Query 900 CATCCTGTGA 909
||||||||||
Sbjct 897 CATCCTGTGA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5