BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913226

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G65585.1 | Symbols:  | pseudogene, similar to oj991113_30.20...  65.8    2e-10


> AT1G65585.1 | Symbols:  | pseudogene, similar to oj991113_30.20, 
blastp match of 25% identity and 8.9e-08 P-value to GP|21741715|emb|CAD41338.1||AL662946 
oj991113_30.20 {Oryza sativa 
(japonica cultivar-group)} | chr1:24384343-24385178 FORWARD 
LENGTH=836
Length=836

 Score = 65.8 bits (35),  Expect = 2e-10
 Identities = 41/44 (93%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  1    ATGTGGAGGATATGGAAATCAAGGAATGATTTTCTCTTCCAAAA  44
            |||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct  168  ATGTGGAGGATATGGAAATCAAGGAATGCTTTCCTCTTTCAAAA  211



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5