BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913230
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34047.2 | Symbols: | Defensin-like (DEFL) family protein |... 350 5e-96
> AT1G34047.2 | Symbols: | Defensin-like (DEFL) family protein
| chr1:12390238-12390915 REVERSE LENGTH=502
Length=502
Score = 350 bits (189), Expect = 5e-96
Identities = 228/246 (93%), Gaps = 5/246 (2%)
Strand=Plus/Plus
Query 1 ATGGCAAAGAACCTCAACACTGTCAGCGTTACTGCTCTCTTGCTTGTCCTATTGATGGCT 60
||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||||||
Sbjct 77 ATGGCAAAGAACCTCAACACTGTCAGCTTTACCGTTCTCTTGCTTGTCCTCTTGATGGCT 136
Query 61 TCCACTGGAATCCTAGAGACCGAGGCTGCATGCTTCAAGTTCTTAGGCGAGTGTGGGGCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 TCCACTGGAATCCTAGAGACCGAGGCTGCATGCTTCAAGTTCTTAGGCGAGTGTGGGGCG 196
Query 121 GTCCCGTTCACAGGTTCAAATGCTGATTGCAAAAGCTGTTGCGAGGGAAAATTCGGATCT 180
||||||||| ||||| ||||||||||||||| ||||||||||| ||| || ||||| |||
Sbjct 197 GTCCCGTTCCCAGGTACAAATGCTGATTGCACAAGCTGTTGCGTGGGGAATTTCGGGTCT 256
Query 181 GCAGCAGTATGTGCTGGACGTGTTGAAG-CTGAGGGAGGCGTGAATCACTGCCATTGCTA 239
|||| || |||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 257 GCAGT-GT--GTGCTGGACGTGTTGAAGTC-GAGGGAGGCGTGAAACACTGCCATTGCTA 312
Query 240 CGGAAC 245
||||||
Sbjct 313 CGGAAC 318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5