BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913231
Length=174
Score E
Sequences producing significant alignments: (Bits) Value
AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 195 1e-49
AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 178 2e-44
AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit, b... 172 7e-43
AT1G35790.1 | Symbols: | transposable element gene | chr1:1329... 128 2e-29
> AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G44210.1);
Has 18 Blast hits to 18 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15728176-15729150
FORWARD LENGTH=564
Length=564
Score = 195 bits (105), Expect = 1e-49
Identities = 120/127 (94%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 429
Query 61 GAGCCACGAGGGCCACCCTTCAC-TCAGGAGGTTCTGGTCATCACGAGGATGACTGGACC 119
||||||||||||||| ||| ||| | | |||||||| ||| |||||||||||||||||||
Sbjct 430 GAGCCACGAGGGCCAGCCTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGACC 488
Query 120 TAACGAT 126
|||||||
Sbjct 489 TAACGAT 495
> AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G43870.1);
Has 15 Blast hits to 15 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15916270-15917332
FORWARD LENGTH=432
Length=432
Score = 178 bits (96), Expect = 2e-44
Identities = 116/126 (92%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 60
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 262 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACAAGCCCAGAATGGGAGTGTCT 321
Query 61 GAGCCACGAGGGCCACCCTTCACTCAGGAGGTTCTGGTCATCACGAGGATGACTGGACCT 120
||||||||||||||| ||| |||| | |||||||| || ||||||||||||||||||||
Sbjct 322 GAGCCACGAGGGCCAGCCTCCACTTATGAGGTTCTAGTTGTCACGAGGATGACTGGACCT 381
Query 121 AACGAT 126
|||||
Sbjct 382 TACGAT 387
> AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit,
blastp match of 86% identity and 9.3e-27 P-value to SP|P06286|ATPH_TOBAC
ATP synthase C chain (EC 3.6.3.14) (Lipid-binding
protein) (Subunit III). (Common tobacco) {Nicotiana tabacum}
| chr3:13534183-13536711 REVERSE LENGTH=2529
Length=2529
Score = 172 bits (93), Expect = 7e-43
Identities = 115/126 (91%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 60
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1947 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCAGAATATGAGTGTCT 2006
Query 61 GAGCCACGAGGGCCACCCTTCACTCAGGAGGTTCTGGTCATCACGAGGATGACTGGACCT 120
|||||| |||||||| ||| |||||| |||||||| ||| ||||| |||||||| |||||
Sbjct 2007 GAGCCATGAGGGCCAGCCTCCACTCATGAGGTTCTAGTCGTCACGGGGATGACTTGACCT 2066
Query 121 AACGAT 126
||||||
Sbjct 2067 AACGAT 2072
> AT1G35790.1 | Symbols: | transposable element gene | chr1:13295190-13300109
REVERSE LENGTH=4920
Length=4920
Score = 128 bits (69), Expect = 2e-29
Identities = 73/75 (97%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 1 ATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGTCT 60
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1482 ATGGACCGACGGGTTAACAGCTAGTCAAGAACGGCTGACGAGCCCGGAATGAGAGTGTCT 1423
Query 61 GAGCCACGAGGGCCA 75
|||||||||||||||
Sbjct 1422 GAGCCACGAGGGCCA 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7595504001
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5