BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913233 Length=177 Score E Sequences producing significant alignments: (Bits) Value AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 215 1e-55 AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit, b... 193 5e-49 AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 193 5e-49 AT1G35790.1 | Symbols: | transposable element gene | chr1:1329... 139 7e-33 AT1G34315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 58.4 2e-08 > AT3G43870.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44210.1); Has 18 Blast hits to 18 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15728176-15729150 FORWARD LENGTH=564 Length=564 Score = 215 bits (116), Expect = 1e-55 Identities = 134/142 (94%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 14 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGT 73 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGT 427 Query 74 CTGAGCCACGAGGGCCAGCCTCCAC-TCAGGAGGTTCTGGTCATCACGAGGATGACTGGA 132 ||||||||||||||||||||||||| | | |||||||| ||| ||||||||||||||||| Sbjct 428 CTGAGCCACGAGGGCCAGCCTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGA 486 Query 133 CCTAACGATGTATGTATGGTTA 154 ||||||||||| ||||| ||| Sbjct 487 CCTAACGATGT--GTATGTTTA 506 > AT3G32990.1 | Symbols: | pseudogene, ATP synthase C subunit, blastp match of 86% identity and 9.3e-27 P-value to SP|P06286|ATPH_TOBAC ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein) (Subunit III). (Common tobacco) {Nicotiana tabacum} | chr3:13534183-13536711 REVERSE LENGTH=2529 Length=2529 Score = 193 bits (104), Expect = 5e-49 Identities = 129/141 (91%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 14 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGT 73 ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 1945 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCAGAATATGAGTGT 2004 Query 74 CTGAGCCACGAGGGCCAGCCTCCACTCAGGAGGTTCTGGTCATCACGAGGATGACTGGAC 133 |||||||| ||||||||||||||||||| |||||||| ||| ||||| |||||||| ||| Sbjct 2005 CTGAGCCATGAGGGCCAGCCTCCACTCATGAGGTTCTAGTCGTCACGGGGATGACTTGAC 2064 Query 134 CTAACGATGTATGTATGGTTA 154 |||||||||| ||||| ||| Sbjct 2065 CTAACGATGT--GTATGTTTA 2083 > AT3G44210.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43870.1); Has 15 Blast hits to 15 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:15916270-15917332 FORWARD LENGTH=432 Length=432 Score = 193 bits (104), Expect = 5e-49 Identities = 120/128 (94%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 14 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGT 73 ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 260 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACAAGCCCAGAATGGGAGTGT 319 Query 74 CTGAGCCACGAGGGCCAGCCTCCACTCAGGAGGTTCTGGTCATCACGAGGATGACTGGAC 133 |||||||||||||||||||||||||| | |||||||| || |||||||||||||||||| Sbjct 320 CTGAGCCACGAGGGCCAGCCTCCACTTATGAGGTTCTAGTTGTCACGAGGATGACTGGAC 379 Query 134 CTAACGAT 141 || ||||| Sbjct 380 CTTACGAT 387 > AT1G35790.1 | Symbols: | transposable element gene | chr1:13295190-13300109 REVERSE LENGTH=4920 Length=4920 Score = 139 bits (75), Expect = 7e-33 Identities = 81/84 (96%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 14 TGATGGACCGACGGGTTAACAGCTGGTCAAGAACGGCTGACGAGCCCGGAATGGGAGTGT 73 |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 1484 TGATGGACCGACGGGTTAACAGCTAGTCAAGAACGGCTGACGAGCCCGGAATGAGAGTGT 1425 Query 74 CTGAGCCACGAGGGCCAGCCTCCA 97 ||||||||||||||||||| |||| Sbjct 1424 CTGAGCCACGAGGGCCAGCTTCCA 1401 Score = 69.4 bits (37), Expect = 1e-11 Identities = 55/63 (87%), Gaps = 4/63 (6%) Strand=Plus/Minus Query 93 CTCCA-CTCAGGAGGTTCTGGTCATCACGAGGATGACTGGACCTAACGATGTATGTATGG 151 ||||| || | |||||||| ||| |||||||||||||||||||||||||||| ||||| Sbjct 1352 CTCCACCT-ATGAGGTTCTAGTCGTCACGAGGATGACTGGACCTAACGATGT--GTATGT 1296 Query 152 TTA 154 ||| Sbjct 1295 TTA 1293 > AT1G34315.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G31400.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:12514106-12516521 REVERSE LENGTH=819 Length=819 Score = 58.4 bits (31), Expect = 2e-08 Identities = 44/50 (88%), Gaps = 2/50 (4%) Strand=Plus/Plus Query 105 GGTTCTGGTCATCACGAGGATGACTGGACCTAACGATGTATGTATGGTTA 154 |||||| || |||||||||||||||||||||||||||| ||||| ||| Sbjct 423 GGTTCTAGTTGTCACGAGGATGACTGGACCTAACGATGT--GTATGTTTA 470 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7746408054 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5