BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913238 Length=1059 Score E Sequences producing significant alignments: (Bits) Value AT1G34100.1 | Symbols: | choline kinase, putative, similar to ... 776 0.0 > AT1G34100.1 | Symbols: | choline kinase, putative, similar to choline kinase (GmCK2p) GI:1438881 from (Glycine max); contains Pfam profile PF01633: Choline/ethanolamine kinase; could not find a suitable start codon; this may be a pseudogene, a transposon insertion is found immediately upstream. | chr1:12415544-12417172 FORWARD LENGTH=804 Length=804 Score = 776 bits (420), Expect = 0.0 Identities = 488/522 (93%), Gaps = 0/522 (0%) Strand=Plus/Plus Query 223 GATCTGTTGTTCAATAGGAAAGATGAGATTCGTACGTTCGAGGTTGTCTCTCGTTATGGT 282 ||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATTTGTTGTTCAACAGAAAAGATGAGATTCGTACGTTCGAGGTTGTCTCTCGTTATGGT 60 Query 283 CACGGTCCTAAGCTTCTTGGCCGGTTTGCTGGCGGTAGAATTGAGGAATTTATTAATGCC 342 ||||||||||||||||||||||||||| |||||||| |||| ||||| |||||||||||| Sbjct 61 CACGGTCCTAAGCTTCTTGGCCGGTTTTCTGGCGGTCGAATCGAGGAGTTTATTAATGCC 120 Query 343 CGGACTTTATCGGCGGCGGATCTACGTGACATGGAAGCATCTGCTCGTGTTGCAGCCAAG 402 ||||| ||||| || || ||||||||||| ||||| | || |||||||||| || ||| Sbjct 121 CGGACGTTATCAGCAGCAAATCTACGTGACGCGGAAGTACCTACTCGTGTTGCGGCTAAG 180 Query 403 CTAAGAGAGTTTCATGGTATAAATATCCCTGGTGATAAAAATGTGCTCATTTGGGATAGG 462 |||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||| Sbjct 181 CTAAGAGAGTTTCATGGTATCAACATCCCTGGTGATAGAAATGTGCTCATTTGGGATAGG 240 Query 463 ATGAGGAATTGGCTTAGACAAGCCAAGAGTCTGTGTACACCTGAAGATTTAGCAGAGTTT 522 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 241 ATGAGGAATTGGCTTAGACAAGCCAAAAGTCTGTGTACACCTGAAGATTTAGCAGAGTTT 300 Query 523 GGTCTAGACAAGATTGAAGCTGAGATAAACTTACTAGAACATGAGCTGCAGGATAAGTGT 582 ||||||||||||||||||| ||||||| |||| || |||||||||||||||||||||||| Sbjct 301 GGTCTAGACAAGATTGAAGATGAGATATACTTGCTGGAACATGAGCTGCAGGATAAGTGT 360 Query 583 AAGCAGAAGGAGATTGGATTTTGTCACAATGATTTGCAGTATGGTAACATTATGCTTGAT 642 |||||| ||||||| || |||||||||||||||||||| ||||||||||||||| ||||| Sbjct 361 AAGCAGCAGGAGATAGGGTTTTGTCACAATGATTTGCAATATGGTAACATTATGATTGAT 420 Query 643 GAAGACACCAATGCCATTACTATCATTGACTACGAGTACGCTAGTTATAACCCGGTTGCA 702 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 421 GAAGATACCAATGCCATTACTATCATTGACTACGAGTACGCTAGTTATAACCCAGTTGCA 480 Query 703 TACGACATTGCAAATCACTTCTGCGAAATGGCAGCAAATTAC 744 |||||||||||||||||||||||||||||||||||||||||| Sbjct 481 TACGACATTGCAAATCACTTCTGCGAAATGGCAGCAAATTAC 522 Score = 392 bits (212), Expect = 3e-108 Identities = 254/275 (92%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 785 CAGGAGAAGAGGAACGAAGTCGATTCATCCATAACTATCTCAGCTCTTCAGGCGAGGAAC 844 ||||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||| Sbjct 530 CAGGAGAAGAGGAACGAAGGAGGTTCATCCATAACTACCTCAGCTCTTCAGGCGAAGAAC 589 Query 845 CAAAGGAAGAAGACATAAAACAGCTCTTGGATAATGTTGAGAAGTACACACTAGCAAGTC 904 |||| ||||| |||||||||||||||||| | ||| ||||||||||||| ||||||| | Sbjct 590 CAAAAGAAGATGACATAAAACAGCTCTTGAAGGATGCTGAGAAGTACACATTAGCAAGCC 649 Query 905 ATCTCTTCTGGGGCTTATGGGGAATCATCTCTGGATATGTAAACAAGATCGAGTTCGATT 964 |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 650 ATCTGTTTTGGGGCTTATGGGGAATCATCTCTGGATATGTAAACAAGATCGACTTCGATT 709 Query 965 ACGCCGAGTATTCAAGACAGAGATTCAAACAATACTGGCTTCGAAAACCCGAGCTCTTAT 1024 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 ACGCCGAGTACTCAAGACAGAGATTCAAACAATACTGGCTTCGAAAACCCGAGCTCTTAC 769 Query 1025 TCTCCTCTCAAATGTATGTTTCAAACACCAAATGA 1059 ||| ||| ||||||||| ||||||||||||||||| Sbjct 770 TCTTCTCCCAAATGTATATTTCAAACACCAAATGA 804 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51857162985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5