BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913238
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34100.1 | Symbols: | choline kinase, putative, similar to ... 776 0.0
> AT1G34100.1 | Symbols: | choline kinase, putative, similar to
choline kinase (GmCK2p) GI:1438881 from (Glycine max); contains
Pfam profile PF01633: Choline/ethanolamine kinase; could
not find a suitable start codon; this may be a pseudogene,
a transposon insertion is found immediately upstream. | chr1:12415544-12417172
FORWARD LENGTH=804
Length=804
Score = 776 bits (420), Expect = 0.0
Identities = 488/522 (93%), Gaps = 0/522 (0%)
Strand=Plus/Plus
Query 223 GATCTGTTGTTCAATAGGAAAGATGAGATTCGTACGTTCGAGGTTGTCTCTCGTTATGGT 282
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATTTGTTGTTCAACAGAAAAGATGAGATTCGTACGTTCGAGGTTGTCTCTCGTTATGGT 60
Query 283 CACGGTCCTAAGCTTCTTGGCCGGTTTGCTGGCGGTAGAATTGAGGAATTTATTAATGCC 342
||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||||||
Sbjct 61 CACGGTCCTAAGCTTCTTGGCCGGTTTTCTGGCGGTCGAATCGAGGAGTTTATTAATGCC 120
Query 343 CGGACTTTATCGGCGGCGGATCTACGTGACATGGAAGCATCTGCTCGTGTTGCAGCCAAG 402
||||| ||||| || || ||||||||||| ||||| | || |||||||||| || |||
Sbjct 121 CGGACGTTATCAGCAGCAAATCTACGTGACGCGGAAGTACCTACTCGTGTTGCGGCTAAG 180
Query 403 CTAAGAGAGTTTCATGGTATAAATATCCCTGGTGATAAAAATGTGCTCATTTGGGATAGG 462
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct 181 CTAAGAGAGTTTCATGGTATCAACATCCCTGGTGATAGAAATGTGCTCATTTGGGATAGG 240
Query 463 ATGAGGAATTGGCTTAGACAAGCCAAGAGTCTGTGTACACCTGAAGATTTAGCAGAGTTT 522
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ATGAGGAATTGGCTTAGACAAGCCAAAAGTCTGTGTACACCTGAAGATTTAGCAGAGTTT 300
Query 523 GGTCTAGACAAGATTGAAGCTGAGATAAACTTACTAGAACATGAGCTGCAGGATAAGTGT 582
||||||||||||||||||| ||||||| |||| || ||||||||||||||||||||||||
Sbjct 301 GGTCTAGACAAGATTGAAGATGAGATATACTTGCTGGAACATGAGCTGCAGGATAAGTGT 360
Query 583 AAGCAGAAGGAGATTGGATTTTGTCACAATGATTTGCAGTATGGTAACATTATGCTTGAT 642
|||||| ||||||| || |||||||||||||||||||| ||||||||||||||| |||||
Sbjct 361 AAGCAGCAGGAGATAGGGTTTTGTCACAATGATTTGCAATATGGTAACATTATGATTGAT 420
Query 643 GAAGACACCAATGCCATTACTATCATTGACTACGAGTACGCTAGTTATAACCCGGTTGCA 702
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GAAGATACCAATGCCATTACTATCATTGACTACGAGTACGCTAGTTATAACCCAGTTGCA 480
Query 703 TACGACATTGCAAATCACTTCTGCGAAATGGCAGCAAATTAC 744
||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TACGACATTGCAAATCACTTCTGCGAAATGGCAGCAAATTAC 522
Score = 392 bits (212), Expect = 3e-108
Identities = 254/275 (92%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 785 CAGGAGAAGAGGAACGAAGTCGATTCATCCATAACTATCTCAGCTCTTCAGGCGAGGAAC 844
||||||||||||||||||| | |||||||||||||| ||||||||||||||||| ||||
Sbjct 530 CAGGAGAAGAGGAACGAAGGAGGTTCATCCATAACTACCTCAGCTCTTCAGGCGAAGAAC 589
Query 845 CAAAGGAAGAAGACATAAAACAGCTCTTGGATAATGTTGAGAAGTACACACTAGCAAGTC 904
|||| ||||| |||||||||||||||||| | ||| ||||||||||||| ||||||| |
Sbjct 590 CAAAAGAAGATGACATAAAACAGCTCTTGAAGGATGCTGAGAAGTACACATTAGCAAGCC 649
Query 905 ATCTCTTCTGGGGCTTATGGGGAATCATCTCTGGATATGTAAACAAGATCGAGTTCGATT 964
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 650 ATCTGTTTTGGGGCTTATGGGGAATCATCTCTGGATATGTAAACAAGATCGACTTCGATT 709
Query 965 ACGCCGAGTATTCAAGACAGAGATTCAAACAATACTGGCTTCGAAAACCCGAGCTCTTAT 1024
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ACGCCGAGTACTCAAGACAGAGATTCAAACAATACTGGCTTCGAAAACCCGAGCTCTTAC 769
Query 1025 TCTCCTCTCAAATGTATGTTTCAAACACCAAATGA 1059
||| ||| ||||||||| |||||||||||||||||
Sbjct 770 TCTTCTCCCAAATGTATATTTCAAACACCAAATGA 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5