BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913246
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34170.3 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 | chr1:... 785 0.0
> AT1G34170.3 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 | chr1:12443578-12446764
REVERSE LENGTH=1641
Length=1641
Score = 785 bits (425), Expect = 0.0
Identities = 697/824 (85%), Gaps = 36/824 (4%)
Strand=Plus/Plus
Query 1 ATGGAAAACAATGAAGAATTGAATGCCCAGCCTGAATTATTAGGCATAATTGATAGAACC 60
|||||||| |||| |||| ||||||| |||||||||||| | | | |||||| ||||
Sbjct 1 ATGGAAAATAATGGAGAAATGAATGCACAGCCTGAATTA-T---C--AGTTGATATAACC 54
Query 61 CAGACCTATATGTATGAGCAATTGTGGAAAATATGTGCTGGACCTTTGTGTGATCTTCCA 120
|||| |||||||||||| |||| ||||| |||||||||||||||||||||| ||||||
Sbjct 55 AAGACTTATATGTATGAGAAATTATGGAACATATGTGCTGGACCTTTGTGTGTTCTTCCG 114
Query 121 AAACCTGGAGAAAAGGTTTATTATTTTCCTCAAGGGCACATTGAGCTCATTGAAGCA-TC 179
|||||||||||||| |||||||| ||||||||||||||||| |||||||||| || | ||
Sbjct 115 AAACCTGGAGAAAAAGTTTATTACTTTCCTCAAGGGCACATCGAGCTCATTG-AGAATTC 173
Query 180 TACAAAAGATGAGTTGGATCAGATAAGGCCACA-TTTTGATCTTCCATCTAAGCTTCGAT 238
||||| |||||| |||||||| || |||||| | ||||||||||||||||||||||||||
Sbjct 174 TACAAGAGATGAATTGGATCATATCAGGCCA-ATTTTTGATCTTCCATCTAAGCTTCGAT 232
Query 239 GTTGTGTTGAT-GATATTCAACTTAAGATAGACCAAAATACGGATGACGTCTACGCAGAG 297
|| |||||| | | |||| | | |||| ||||| ||||||| ||||| ||||| || ||
Sbjct 233 GTCGTGTTG-TGGCTATTGATCGTAAGGTAGACAAAAATACAGATGAAGTCTATGCTCAG 291
Query 298 ATTTATTTAATGCCAGATACAACAGACGTTATAACTCC-TATTACTACTATGGATAATCA 356
|||| |||||||| ||||||||||| ||||| || || || |||||||||||||| ||
Sbjct 292 ATTTCGTTAATGCCTGATACAACAGAAGTTATGAC-CCATAATACTACTATGGATACTCG 350
Query 357 AAGACCAATGGTTTATTCTTTTAGTAAAATTTTAACTTCGTCTGACGCCAACACACA-TG 415
||||||||| ||||||| |||||||||||||||||| ||||||||| || | | ||
Sbjct 351 AAGACCAATAGTTTATTTTTTTAGTAAAATTTTAACGGCGTCTGACGTCAGTTTA-AGTG 409
Query 416 GTGGATT-ATCTATTCTTAAA-AGACATGCCACTGAATGTCTTCCTCCGCTGGATATGTC 473
||||||| || ||||| ||| | | |||||| ||| ||| |||||||||||||||||||
Sbjct 410 GTGGATTAAT-TATTCCCAAACA-ATATGCCATTGAGTGTTTTCCTCCGCTGGATATGTC 467
Query 474 CCAACGAA-CGCCTATGCAGCATCTTGTTGCGAAA-GATCTCCATGGTCGAGAATGGACA 531
||||| || || | || |||||||||| ||| |||||| |||||| ||||||||
Sbjct 468 CCAACCAATATCC-ACACAAAATCTTGTTGC-AAAGGATCTCTATGGTCAAGAATGGAGT 525
Query 532 TTCAAGCAT-TCTTTTAGAGGTACACCGCGGAGACATCT-TTT--TA-C--CAGTGGCTG 584
||||| ||| || |||||||||||||||| ||||||| | ||| || | | | |||||
Sbjct 526 TTCAAACATGTC-TTTAGAGGTACACCGCAGAGACATATGTTTACTAGCGGCGGCGGCTG 584
Query 585 GAGCTTATTTGCAACAACAAAAAGATTGATTGTTGGGGATGCT-TTTGTATTCCTTAGAG 643
|||| ||||||||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct 585 GAGCGTATTTGCAACAACAAAAAGATTGATTGTTGGGGATA-TATTTGTACTCCTTAGAG 643
Query 644 GAGAGAATGGGGAGCTAGGAGTTGGTATTAGGCGAGCAA-GACATCAACTAGGCCACAAA 702
|||||||||||||| || || |||||||||||||||||| | ||||||| |||||||| |
Sbjct 644 GAGAGAATGGGGAGTTACGATTTGGTATTAGGCGAGCAAAG-CATCAACAAGGCCACATA 702
Query 703 CCTTCATTAGTAATATCAACACAGTGTATGAAAGATGGAGTAATTGCTTCAGTAGTAAAT 762
||||||| |||||||||| || | |||||| || |||||||||| ||||||||||| |||
Sbjct 703 CCTTCATCAGTAATATCAGCAAATTGTATGCAACATGGAGTAATAGCTTCAGTAGTGAAT 762
Query 763 GCTTTTAAAAGCAAATGCAAGTTCATTGTGGTTTATAAGCCAAG 806
|||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 763 GCTTTTAAAACCAAATGCATGTTCAATGTGGTTTATAAGCCAAG 806
Score = 507 bits (274), Expect = 2e-142
Identities = 437/515 (85%), Gaps = 14/515 (3%)
Strand=Plus/Plus
Query 883 AGGATGCGGTTTGAGGGTCAA-GATTTTTCTGAAAAAAGATACTCTGGGACGATTATTGG 941
||||||| |||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 805 AGGATGCAGTTTGAGGGT-AAGGATTTTTCTGAAAAAAGATACGATGGGACGATTATTGG 863
Query 942 TGTAAATGACATGTCTCCTCATTGGAAAGATTCGGAATGGCGAAGCCTACAAGTGCAATG 1001
||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 864 TGTAAATGACATGTCTCCTCATTGGAAGGATTCAGAATGGCGAAGCCTAAAAGTGCAATG 923
Query 1002 GGACGAGCTTTCACCATTTCCAAGACCTGATAAGGTTTCACCATGGGAAATTGAACATTT 1061
|||||||||||||||||||| ||||||| || |||||||||| ||||| || || ||| |
Sbjct 924 GGACGAGCTTTCACCATTTCTAAGACCTAATCAGGTTTCACCTTGGGACATCGAGCATCT 983
Query 1062 AATCCCTTCGTCA-AGTATTTCCCAGCCAACTGT-ACTCCAGAAAAAACGT-GCACGTCA 1118
||| ||||||||| | ||| || || ||| | | | ||||||||| | | | |||
Sbjct 984 AATTCCTTCGTCAGA-TATCTCTCAATCAAGTTTGAAAA-AGAAAAAACATTGG-CTTCA 1040
Query 1119 AT-GTAATGAAATCGGTTCAACATCATCGAATCTTTTGACAGGCCAAGAAATTGGACAAT 1177
|| | |||||||| ||| |||||| ||||||||||| |||| |||||||||||||||||
Sbjct 1041 ATTG-AATGAAATTGGTGCAACATTATCGAATCTTTGGACATGCCAAGAAATTGGACAA- 1098
Query 1178 CG-AGCTTGAGTTCTCCGA-AGAGTGTTCCTGAGTTTAGTTGTCGCGATGCAGTTGAAGA 1235
|| ||| ||| |||||| | | ||||||||||||||||||| || | ||||| |||||||
Sbjct 1099 CGGAGCATGAATTCTCCTATA-AGTGTTCCTGAGTTTAGTTATCCCAATGCAATTGAAGA 1157
Query 1236 TTCCAAGTTTCCTTCTGATTGGCTAATGAGTGACTTAGTCCCAGCCATACCTAAACCAAA 1295
||| ||||||| ||||| || |||| ||| | ||| | ||| |||||||||||| |||
Sbjct 1158 TTCAAAGTTTCTTTCTGGTTTGCTACTGAATCACTCACTCCTAGCCATACCTAATGAAAA 1217
Query 1296 CAATAACAACAACCAATTGGTTCAACAAACGAAAGAAAAGATAACAACTGAAGCAACCAC 1355
| |||||| | ||||| || |||||| || ||||||| | ||||||||||||||||||||
Sbjct 1218 CTATAACAGCGACCAAATGATTCAACCAAGGAAAGAAGATATAACAACTGAAGCAACCAC 1277
Query 1356 TAGTTGCATATTGTTTGGAGTTGATCTTACCAAAG 1390
||||||| | ||||||||||||||||| |||||||
Sbjct 1278 TAGTTGCCTCTTGTTTGGAGTTGATCTGACCAAAG 1312
Score = 368 bits (199), Expect = 1e-100
Identities = 293/337 (87%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 1545 AAAGGTTCAGATGCAAGGTGTAGTCATTGGCAGAGCTGTGGATTTAACTGTTTTTCATGG 1604
||| ||||| ||||||||||||| ||| | ||||||||||||||||||| | | |||||
Sbjct 1309 AAA-GTTCATATGCAAGGTGTAGCCATAAGTAGAGCTGTGGATTTAACTGCTATGCATGG 1367
Query 1605 ATACAATCAGTTGATACAAAAACTAGAAGAACTCTTTGATCTCAAAGACGAGTTACGAAG 1664
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1368 ATACAATCAGCTGATACAAAAACTGGAAGAACTCTTTGATCTCAAAGACGAGTTACGAA- 1426
Query 1665 C-CGCAATCAATGGGAAATAGTTTTTATAAACAATGAAGGAAATGTGATGCCTCTCGGGG 1723
| ||||||||||||||||||||||||| ||||||||||||| || ||||| | ||||||
Sbjct 1427 CTCGCAATCAATGGGAAATAGTTTTTACAAACAATGAAGGAGCTGAGATGCTTGTCGGGG 1486
Query 1724 ATGATCCATGGCCTGAATTCTGCAATATGGCGaaaaaaaTATTTATAGGCTCAAAAGAAG 1783
|||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||| |
Sbjct 1487 ATGATCCATGGCCTGAGTTCTGCAATATGGCGAAAAGAATATTCATATGCTCAAAAGAGG 1546
Query 1784 AGATAGA-AAAGATGAAGTCCCGGAACAAAGT-TTCTCAAGCTAAATCAACAGTTTTAAC 1841
||||| | ||| ||||||| ||||||| | || |||| || |||||| || ||||||
Sbjct 1547 AGATAAAGAAA-ATGAAGTTGAAGAACAAATTCTT-TCAACCTGAATCAAAAGCTTTAAC 1604
Query 1842 ATCTTCTTCTGACGTACCACCAAACGTCAAAGCATAA 1878
|||||| ||||||||||||||||||| || ||||
Sbjct 1605 ATCTTCA---GACGTACCACCAAACGTCACAG-ATAA 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92971409340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5