BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913246 Length=1878 Score E Sequences producing significant alignments: (Bits) Value AT1G34170.3 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 | chr1:... 785 0.0 > AT1G34170.3 | Symbols: ARF13 | AUXIN RESPONSE FACTOR 13 | chr1:12443578-12446764 REVERSE LENGTH=1641 Length=1641 Score = 785 bits (425), Expect = 0.0 Identities = 697/824 (85%), Gaps = 36/824 (4%) Strand=Plus/Plus Query 1 ATGGAAAACAATGAAGAATTGAATGCCCAGCCTGAATTATTAGGCATAATTGATAGAACC 60 |||||||| |||| |||| ||||||| |||||||||||| | | | |||||| |||| Sbjct 1 ATGGAAAATAATGGAGAAATGAATGCACAGCCTGAATTA-T---C--AGTTGATATAACC 54 Query 61 CAGACCTATATGTATGAGCAATTGTGGAAAATATGTGCTGGACCTTTGTGTGATCTTCCA 120 |||| |||||||||||| |||| ||||| |||||||||||||||||||||| |||||| Sbjct 55 AAGACTTATATGTATGAGAAATTATGGAACATATGTGCTGGACCTTTGTGTGTTCTTCCG 114 Query 121 AAACCTGGAGAAAAGGTTTATTATTTTCCTCAAGGGCACATTGAGCTCATTGAAGCA-TC 179 |||||||||||||| |||||||| ||||||||||||||||| |||||||||| || | || Sbjct 115 AAACCTGGAGAAAAAGTTTATTACTTTCCTCAAGGGCACATCGAGCTCATTG-AGAATTC 173 Query 180 TACAAAAGATGAGTTGGATCAGATAAGGCCACA-TTTTGATCTTCCATCTAAGCTTCGAT 238 ||||| |||||| |||||||| || |||||| | |||||||||||||||||||||||||| Sbjct 174 TACAAGAGATGAATTGGATCATATCAGGCCA-ATTTTTGATCTTCCATCTAAGCTTCGAT 232 Query 239 GTTGTGTTGAT-GATATTCAACTTAAGATAGACCAAAATACGGATGACGTCTACGCAGAG 297 || |||||| | | |||| | | |||| ||||| ||||||| ||||| ||||| || || Sbjct 233 GTCGTGTTG-TGGCTATTGATCGTAAGGTAGACAAAAATACAGATGAAGTCTATGCTCAG 291 Query 298 ATTTATTTAATGCCAGATACAACAGACGTTATAACTCC-TATTACTACTATGGATAATCA 356 |||| |||||||| ||||||||||| ||||| || || || |||||||||||||| || Sbjct 292 ATTTCGTTAATGCCTGATACAACAGAAGTTATGAC-CCATAATACTACTATGGATACTCG 350 Query 357 AAGACCAATGGTTTATTCTTTTAGTAAAATTTTAACTTCGTCTGACGCCAACACACA-TG 415 ||||||||| ||||||| |||||||||||||||||| ||||||||| || | | || Sbjct 351 AAGACCAATAGTTTATTTTTTTAGTAAAATTTTAACGGCGTCTGACGTCAGTTTA-AGTG 409 Query 416 GTGGATT-ATCTATTCTTAAA-AGACATGCCACTGAATGTCTTCCTCCGCTGGATATGTC 473 ||||||| || ||||| ||| | | |||||| ||| ||| ||||||||||||||||||| Sbjct 410 GTGGATTAAT-TATTCCCAAACA-ATATGCCATTGAGTGTTTTCCTCCGCTGGATATGTC 467 Query 474 CCAACGAA-CGCCTATGCAGCATCTTGTTGCGAAA-GATCTCCATGGTCGAGAATGGACA 531 ||||| || || | || |||||||||| ||| |||||| |||||| |||||||| Sbjct 468 CCAACCAATATCC-ACACAAAATCTTGTTGC-AAAGGATCTCTATGGTCAAGAATGGAGT 525 Query 532 TTCAAGCAT-TCTTTTAGAGGTACACCGCGGAGACATCT-TTT--TA-C--CAGTGGCTG 584 ||||| ||| || |||||||||||||||| ||||||| | ||| || | | | ||||| Sbjct 526 TTCAAACATGTC-TTTAGAGGTACACCGCAGAGACATATGTTTACTAGCGGCGGCGGCTG 584 Query 585 GAGCTTATTTGCAACAACAAAAAGATTGATTGTTGGGGATGCT-TTTGTATTCCTTAGAG 643 |||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||||| Sbjct 585 GAGCGTATTTGCAACAACAAAAAGATTGATTGTTGGGGATA-TATTTGTACTCCTTAGAG 643 Query 644 GAGAGAATGGGGAGCTAGGAGTTGGTATTAGGCGAGCAA-GACATCAACTAGGCCACAAA 702 |||||||||||||| || || |||||||||||||||||| | ||||||| |||||||| | Sbjct 644 GAGAGAATGGGGAGTTACGATTTGGTATTAGGCGAGCAAAG-CATCAACAAGGCCACATA 702 Query 703 CCTTCATTAGTAATATCAACACAGTGTATGAAAGATGGAGTAATTGCTTCAGTAGTAAAT 762 ||||||| |||||||||| || | |||||| || |||||||||| ||||||||||| ||| Sbjct 703 CCTTCATCAGTAATATCAGCAAATTGTATGCAACATGGAGTAATAGCTTCAGTAGTGAAT 762 Query 763 GCTTTTAAAAGCAAATGCAAGTTCATTGTGGTTTATAAGCCAAG 806 |||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 763 GCTTTTAAAACCAAATGCATGTTCAATGTGGTTTATAAGCCAAG 806 Score = 507 bits (274), Expect = 2e-142 Identities = 437/515 (85%), Gaps = 14/515 (3%) Strand=Plus/Plus Query 883 AGGATGCGGTTTGAGGGTCAA-GATTTTTCTGAAAAAAGATACTCTGGGACGATTATTGG 941 ||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||| Sbjct 805 AGGATGCAGTTTGAGGGT-AAGGATTTTTCTGAAAAAAGATACGATGGGACGATTATTGG 863 Query 942 TGTAAATGACATGTCTCCTCATTGGAAAGATTCGGAATGGCGAAGCCTACAAGTGCAATG 1001 ||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| Sbjct 864 TGTAAATGACATGTCTCCTCATTGGAAGGATTCAGAATGGCGAAGCCTAAAAGTGCAATG 923 Query 1002 GGACGAGCTTTCACCATTTCCAAGACCTGATAAGGTTTCACCATGGGAAATTGAACATTT 1061 |||||||||||||||||||| ||||||| || |||||||||| ||||| || || ||| | Sbjct 924 GGACGAGCTTTCACCATTTCTAAGACCTAATCAGGTTTCACCTTGGGACATCGAGCATCT 983 Query 1062 AATCCCTTCGTCA-AGTATTTCCCAGCCAACTGT-ACTCCAGAAAAAACGT-GCACGTCA 1118 ||| ||||||||| | ||| || || ||| | | | ||||||||| | | | ||| Sbjct 984 AATTCCTTCGTCAGA-TATCTCTCAATCAAGTTTGAAAA-AGAAAAAACATTGG-CTTCA 1040 Query 1119 AT-GTAATGAAATCGGTTCAACATCATCGAATCTTTTGACAGGCCAAGAAATTGGACAAT 1177 || | |||||||| ||| |||||| ||||||||||| |||| ||||||||||||||||| Sbjct 1041 ATTG-AATGAAATTGGTGCAACATTATCGAATCTTTGGACATGCCAAGAAATTGGACAA- 1098 Query 1178 CG-AGCTTGAGTTCTCCGA-AGAGTGTTCCTGAGTTTAGTTGTCGCGATGCAGTTGAAGA 1235 || ||| ||| |||||| | | ||||||||||||||||||| || | ||||| ||||||| Sbjct 1099 CGGAGCATGAATTCTCCTATA-AGTGTTCCTGAGTTTAGTTATCCCAATGCAATTGAAGA 1157 Query 1236 TTCCAAGTTTCCTTCTGATTGGCTAATGAGTGACTTAGTCCCAGCCATACCTAAACCAAA 1295 ||| ||||||| ||||| || |||| ||| | ||| | ||| |||||||||||| ||| Sbjct 1158 TTCAAAGTTTCTTTCTGGTTTGCTACTGAATCACTCACTCCTAGCCATACCTAATGAAAA 1217 Query 1296 CAATAACAACAACCAATTGGTTCAACAAACGAAAGAAAAGATAACAACTGAAGCAACCAC 1355 | |||||| | ||||| || |||||| || ||||||| | |||||||||||||||||||| Sbjct 1218 CTATAACAGCGACCAAATGATTCAACCAAGGAAAGAAGATATAACAACTGAAGCAACCAC 1277 Query 1356 TAGTTGCATATTGTTTGGAGTTGATCTTACCAAAG 1390 ||||||| | ||||||||||||||||| ||||||| Sbjct 1278 TAGTTGCCTCTTGTTTGGAGTTGATCTGACCAAAG 1312 Score = 368 bits (199), Expect = 1e-100 Identities = 293/337 (87%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 1545 AAAGGTTCAGATGCAAGGTGTAGTCATTGGCAGAGCTGTGGATTTAACTGTTTTTCATGG 1604 ||| ||||| ||||||||||||| ||| | ||||||||||||||||||| | | ||||| Sbjct 1309 AAA-GTTCATATGCAAGGTGTAGCCATAAGTAGAGCTGTGGATTTAACTGCTATGCATGG 1367 Query 1605 ATACAATCAGTTGATACAAAAACTAGAAGAACTCTTTGATCTCAAAGACGAGTTACGAAG 1664 |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1368 ATACAATCAGCTGATACAAAAACTGGAAGAACTCTTTGATCTCAAAGACGAGTTACGAA- 1426 Query 1665 C-CGCAATCAATGGGAAATAGTTTTTATAAACAATGAAGGAAATGTGATGCCTCTCGGGG 1723 | ||||||||||||||||||||||||| ||||||||||||| || ||||| | |||||| Sbjct 1427 CTCGCAATCAATGGGAAATAGTTTTTACAAACAATGAAGGAGCTGAGATGCTTGTCGGGG 1486 Query 1724 ATGATCCATGGCCTGAATTCTGCAATATGGCGaaaaaaaTATTTATAGGCTCAAAAGAAG 1783 |||||||||||||||| ||||||||||||||||||| |||||| ||| |||||||||| | Sbjct 1487 ATGATCCATGGCCTGAGTTCTGCAATATGGCGAAAAGAATATTCATATGCTCAAAAGAGG 1546 Query 1784 AGATAGA-AAAGATGAAGTCCCGGAACAAAGT-TTCTCAAGCTAAATCAACAGTTTTAAC 1841 ||||| | ||| ||||||| ||||||| | || |||| || |||||| || |||||| Sbjct 1547 AGATAAAGAAA-ATGAAGTTGAAGAACAAATTCTT-TCAACCTGAATCAAAAGCTTTAAC 1604 Query 1842 ATCTTCTTCTGACGTACCACCAAACGTCAAAGCATAA 1878 |||||| ||||||||||||||||||| || |||| Sbjct 1605 ATCTTCA---GACGTACCACCAAACGTCACAG-ATAA 1637 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92971409340 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5