BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913256
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:2... 797 0.0
AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:2... 654 0.0
> AT1G54110.1 | Symbols: | Membrane fusion protein Use1 | chr1:20199418-20201729
FORWARD LENGTH=867
Length=867
Score = 797 bits (431), Expect = 0.0
Identities = 523/567 (92%), Gaps = 8/567 (1%)
Strand=Plus/Plus
Query 44 CCAAAGTTACAAAGGCTAAGGTGAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCGA 103
||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 199 CCAGAGTTACAAACGCTAAGGTGAATGAGTACTATGAGAAGATTGAAGCTGTTGTTTC-A 257
Query 104 -GAATAGCTGCTCAAGTGACTGACACAGAGTTTTCTTATGAAAATTTTGCAAAGGATTCG 162
|||||| |||||||||| || |||||||| | ||| ||||| |||||||||||||||
Sbjct 258 CGAATAGTTGCTCAAGTGCCTCACACAGAGGTATCTGATGAAGCTTTTGCAAAGGATTCT 317
Query 163 ACCAGCGATAGTTCTCCCAATA-TAGAAGACGATACACGAAGCCCCACTTCTCCACAGCT 221
|| | ||||||||||||||| | |||||||||||||||||| ||||| ||||||||||||
Sbjct 318 ACTAACGATAGTTCTCCCAA-AGTAGAAGACGATACACGAACCCCCAATTCTCCACAGCT 376
Query 222 GA-AACGAAGAATCGTGCCTTTATGTTCCAAGGAGCCAAGCTATGACGCTGATCCCTCAA 280
|| || |||||||||||||| | ||||||| |||| |||||||||||||||||||||||
Sbjct 377 GAGAA-GAAGAATCGTGCCTGCAAGTTCCAAAGAGCAAAGCTATGACGCTGATCCCTCAA 435
Query 281 AACCAATAAAACTAGACACCGCAGCTCAAGCGCGCA-TTGACAAGCAGAGAAAGCTTCAA 339
||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 436 AACCAATAAAACTAGACACCGCAGCTCAAGCGCA-AGTTAACAAGCAGAGAAAGCTTCAA 494
Query 340 GAGGATCTAACCGATGAAATGGTGGTACTTGCGAGACAACTCAAGGAGAGAAGTCAAATG 399
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 495 GAGGATCTAACCGATGAAATGGTGGTACTTGCGAGACAACTTAAGGAGAGAAGTCAAATG 554
Query 400 ATAAGCCAATTTGTGCAAAATACAGAAAAGATACTTGACTCTACAGAGGAAGCCATTGAG 459
|||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 555 ATAAGCCAATCTGTGCAAAATACAGAAAAGATACTTGATTCTACCGAGGAAGCCATTGAG 614
Query 460 CAAAGCTTGGCAAGCACCGGACACGCAACCGTAAGAGCCACAAAGATATATTCAGAAAGC 519
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 615 CAAAGCTTAGCAAGCACAGGACACGCAACCGTAAGAGCCACAAAGATTTATTCAGAAAGC 674
Query 520 TCAAAGACAATTTGCTTCCAGTGGCTCTTGATCTTCGCCATGACCTGTGTGTTCATAATG 579
|||||||| | |||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 675 TCAAAGACGAGTTGCTTCCAGTGGCTCTTGATCCTCGCCATGACATGTGTGTTCATCATG 734
Query 580 GTTGTCCTGTTGATCCGAGTCACATAG 606
|||||| ||||||||||||||||||||
Sbjct 735 GTTGTCATGTTGATCCGAGTCACATAG 761
> AT3G55600.1 | Symbols: | Membrane fusion protein Use1 | chr3:20620443-20622470
FORWARD LENGTH=975
Length=975
Score = 654 bits (354), Expect = 0.0
Identities = 504/575 (88%), Gaps = 15/575 (3%)
Strand=Plus/Plus
Query 44 CCAAAGTTACAAAGGCTAAGGTGAATGAGTACTATGAGAAGATTGAAGCTGTTGCTT-CG 102
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 275 CCAGAGTTACAAAGGCTAAGGTTAATGAGTACTATGAGAAGATTGAAGCTGTTGCTTCCA 334
Query 103 AGAATAGCTGCTCAAGTGACTGACACAGAGTTTTCTTATGAAAATTTTGCAAAGGATTCG 162
|| |||||| |||||| | |||| |||||| | ||| ||||| |||||||| ||||||
Sbjct 335 AG-ATAGCTTCTCAAGAGCCTGAGACAGAGGTATCTGATGAACCCTTTGCAAAAGATTCG 393
Query 163 ACCAG-CGATAGTTCTCCCAATATAGAAGACGATACACGAAGCCCCACTTCTCCACAGCT 221
|| || || || || || || |||||||| || | |||||||||||||| ||||||||
Sbjct 394 ACTAGTGGA-AGCTCACCAAAAATAGAAGATGAGCCTCGAAGCCCCACTTCGCCACAGCT 452
Query 222 GA-AACGAAGAATCGTGCCTTTATGTTCCAAGGAGCCAAGCTATGA--C-GCTGAT-C-- 274
|| || |||||||||| ||| | |||||||||||| ||||| ||| | |||||| |
Sbjct 453 GAGAA-GAAGAATCGTCCCTGCAAGTTCCAAGGAGCAAAGCTTTGATGCTGCTGATGCTG 511
Query 275 ---CCTCAAAACCAATAAAACTAGACACCGCAGCTCAAGCGCGCATTGACAAGCAGAGAA 331
| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 512 ATTCATCAAAACCAATAAAACTAGACACCGCAGCTCAAGCGCACATTGACAAGCACAGAA 571
Query 332 AGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTTGCGAGACAACTCAAGGAGAGAA 391
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 572 AGCTTCAAGAGGATCTAACCGATGAAATGGTGGTACTTGCAAGACAACTCAAGGAGAGAA 631
Query 392 GTCAAATGATAAGCCAATTTGTGCAAAATACAGAAAAGATACTTGACTCTACAGAGGAAG 451
||||| ||| || |||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 632 GTCAAGCGATTAGTCAATCTGTGCAAAATACAGAAAAGATACTTGACTCTACCGAGGAGG 691
Query 452 CCATTGAGCAAAGCTTGGCAAGCACCGGACACGCAACCGTAAGAGCCACAAAGATATATT 511
|||||||||||||| | || ||||| |||||||| || |||||| |||||||||||||
Sbjct 692 CCATTGAGCAAAGCCTAGCGAGCACAGGACACGCGACAACAAGAGCGACAAAGATATATT 751
Query 512 CAGAAAGCTCAAAGACAATTTGCTTCCAGTGGCTCTTGATCTTCGCCATGACCTGTGTGT 571
|| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 752 CACAAAGCTCAAAGACAAGTTGCTTCCAGTGGCTCTTGATCTTCGCCATGATCTGTGTGT 811
Query 572 TCATAATGGTTGTCCTGTTGATCCGAGTCACATAG 606
||||||||||||| ||||||||||| |||||||||
Sbjct 812 TCATAATGGTTGTTCTGTTGATCCGGGTCACATAG 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29186039407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5