BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913258
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14670.1 | Symbols: | Endomembrane protein 70 protein famil... 523 4e-148
AT2G01970.1 | Symbols: | Endomembrane protein 70 protein famil... 327 3e-89
> AT1G14670.1 | Symbols: | Endomembrane protein 70 protein family
| chr1:5037612-5040528 FORWARD LENGTH=2165
Length=2165
Score = 523 bits (283), Expect = 4e-148
Identities = 330/351 (94%), Gaps = 9/351 (3%)
Strand=Plus/Plus
Query 1 GTGGTGATCGTCCTTATATGGACTCTAGTCACATCGCCTTTACTCGTCTTGGGTGGTATC 60
||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||||
Sbjct 1252 GTGGTGATCGTCCTTATATGGACTCTAGTTACCTCACCTTTACTCGTTTTGGGTGGTATC 1311
Query 61 GCGGGCAAAAACAGCAAAGCGGAGTTCCAAGCATCATGCCGTACAACCAAATATCCCCGT 120
||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| |||
Sbjct 1312 GCGGGTAAAAACAGCAAAGCAGAGTTCCAAGCACCATGCCGTACAACCAAATATCCTCGT 1371
Query 121 GAGATTCCACCACTCCCTTGGTACAGAAGTGCTATTCCTCAGATGGCCATGGCTGGtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GAGATTCCACCACTCCCTTGGTACAGAAGTGCTATTCCTCAGATGGCCATGGCTGGTTTT 1431
Query 181 tttCCTTTCAGTGCCATCTACATCGAGCTTTACTACATTTTCGCTAGTGTCTGGGGTCAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 CTTCCTTTCAGTGCCATCTACATCGAGCTTTACTACATTTTCGCTAGTGTCTGGGGTCAC 1491
Query 241 CGGATCTACACCATCTACAGCATCGT---C-T--T---CATCATTCTCATCACCTTCACT 291
|||||||||||||||||||||||| | | | | |||||||||||||| | |||||
Sbjct 1492 CGGATCTACACCATCTACAGCATCTTATTCATCGTTTTCATCATTCTCATCATCGTCACT 1551
Query 292 GCTTTTATAACCGTTGCCTTGACTTACTTCCAACTCGCTGCTGAAGATCAC 342
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GCTTTTATAACCGTTGCCTTGACTTACTTCCAACTCGCTGCTGAAGATCAC 1602
> AT2G01970.1 | Symbols: | Endomembrane protein 70 protein family
| chr2:451871-454885 REVERSE LENGTH=2171
Length=2171
Score = 327 bits (177), Expect = 3e-89
Identities = 297/352 (84%), Gaps = 19/352 (5%)
Strand=Plus/Plus
Query 4 GTGATCGTCCTTATATGGACTCTAGTCACATCGCCTTTACTCGTCTTGGGTGGTATCGCG 63
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||| ||
Sbjct 1264 GTGATCGTCCTCATATGGACACTAGTCACTTCGCCTTTACTTGTGTTGGGTGGTATTGCC 1323
Query 64 GGCAAAAACAGCAAAGCGGAGTTCCAAGCAT-CATG-CCGTACAACCAAATATCCCCGTG 121
|| |||||||||||||| ||||||||||| | || | ||| || || || ||||| || |
Sbjct 1324 GGTAAAAACAGCAAAGCTGAGTTCCAAGC-TCCA-GTCCGCACCACTAAGTATCCTCGGG 1381
Query 122 AGATTCCACCACTCCCTTGGTACAGAAGTGCTATTCCTCAGATGGCCATGGCTGGttttt 181
|||| || |||||||| |||||||| |||||| | || ||||||||||||||||| |||
Sbjct 1382 AGATCCCGCCACTCCCATGGTACAGGAGTGCTGTACCGCAGATGGCCATGGCTGGATTTC 1441
Query 182 ttCCTTTCAGTGCCATCTACATCGAGCTTTACTACAT-TTTCGCTAGTGTCTGGGGTCAC 240
|||||||||||||||||||||||||||| || ||||| ||| || ||||| ||||| ||
Sbjct 1442 TTCCTTTCAGTGCCATCTACATCGAGCTATATTACATCTTT-GCCAGTGTTTGGGGCCAT 1500
Query 241 CGGATCTACACCATCTACAGCATCGTCTTCATCATTC-TCATCA-CC------T--TCAC 290
|| ||||| ||||| ||||||||| |||||||| || |||||| || | ||||
Sbjct 1501 CGTATCTATACCATTTACAGCATCCTCTTCATC-GTCTTCATCATCCTGTTGATCGTCAC 1559
Query 291 TGCTTTTATAACCGTTG-CCTTGACTTACTTCCAACTCGCTGCTGAAGATCA 341
|||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 1560 TGCTTTTATAACAGTTGCCCTT-ACTTACTTCCAACTCGCTGCTGAAGATCA 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16135947429
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5