BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913263

Length=351
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G01660.1 | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter ...   213    9e-55


> AT4G01660.1 | Symbols: ATABC1, ATATH10, ABC1 | ABC transporter 
1 | chr4:708544-711256 FORWARD LENGTH=2141
Length=2141

 Score =  213 bits (115),  Expect = 9e-55
 Identities = 153/172 (89%), Gaps = 0/172 (0%)
 Strand=Plus/Plus

Query  46   TATAGGATGGTAAATGGGACACCAATGACACAAGACAATCAACTTGCACTATCTTCTTTC  105
            ||||||||||||||||||||||||||||||| ||||||||| | |||  |||| ||||| 
Sbjct  706  TATAGGATGGTAAATGGGACACCAATGACACCAGACAATCAGCCTGCGTTATCGTCTTTG  765

Query  106  ATGTCTAAAGAAAGTGCAGATAGATTAGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCT  165
            |||||||| |||| ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct  766  ATGTCTAAGGAAAATGCTGAAAGATTGGCTCTTGGATTGTGTGAAATGCGTGGAGCTGCT  825

Query  166  CTTAAATTTGGGAAAATATTGAGTATACATGATGAGAGTCTTGTTCCTGCTC  217
            |||||| ||||  |||| ||||||||||| || |||||||| ||||||||||
Sbjct  826  CTTAAAGTTGGCCAAATGTTGAGTATACAGGACGAGAGTCTCGTTCCTGCTC  877



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16437553923


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5