BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913285
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02710.1 | Symbols: | ARM repeat superfamily protein | chr3... 682 0.0
> AT3G02710.1 | Symbols: | ARM repeat superfamily protein | chr3:583113-585948
FORWARD LENGTH=1829
Length=1829
Score = 682 bits (369), Expect = 0.0
Identities = 409/429 (95%), Gaps = 0/429 (0%)
Strand=Plus/Plus
Query 22 TGGCTTCTGACGAAGATTAAGGTGAGGGAATTTGAAGGAATCAAGAAGTATGCGTCTGAG 81
|||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||
Sbjct 720 TGGCTTCTGACGAAGATTAAGGTGAGGGAATTCGAAGGAATCAAGCAGTACGCGTCTGAG 779
Query 82 ATTCTTGCAATTCTGTTGCAAAACAGCACGGCGAATCAGAAACGGCTAGGTCAGATGAAT 141
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 ATTCTTGCAATTCTGCTGCAAAACAGTACGGCGAATCAGAAACGGCTAGGTCAGATGAAT 839
Query 142 GGTGTAGACGCTGTGCTTGAAGGTGTGGCGATGAATAAGTCGAAGGATCCTAAAACTCCT 201
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 840 GGTGTAGACGCTGTGCTTGAAGGTGTGGCGATGTATAAGTCAAAGGATCCTAAAACTCCT 899
Query 202 GATAAGGAAGAGATGTTAGATAATTTATTTGATTGTTTGTGTTGCCTCTTGATGCCATTG 261
||| |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 900 GATGAGGAAGAGATGTTAGAGAATCTGTTTGATTGTTTGTGTTGCCTCTTGATGCCATTG 959
Query 262 GAGAACAAGGAGAGGTTTGTGAATGCAGAAGGTGTTGAGCTGATGATTATAATCATGAAG 321
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 960 GAGAACAAGGAGAGGTTTGTGAATGCGGAAGGTGTAGAGCTGATGATTATTATCATGAAA 1019
Query 322 CAGAAGAAATATGCTTACGGGTCTGCAATTCGAGCTCTAGACTTTGCCATGACCAATTAT 381
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1020 CAGAAGAAATATGCTTACGGGTCTGCTATTCGAGCTCTAGACTTCGCCATGACCAATTAT 1079
Query 382 CCACCAGCATGTCAGAGTTTTGTGGATGTTATGGGACTGAAGACAGCATTTGCTGCTTTC 441
|||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1080 CCACCAGCATGTGAGAGGTTTGTGGATGTTATGGGACTGAAAACAGCATTTGCTGCTTTC 1139
Query 442 ATGGGTAAG 450
|||||||||
Sbjct 1140 ATGGGTAAG 1148
Score = 466 bits (252), Expect = 1e-130
Identities = 280/294 (95%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 510 GATTCCGCTAAGCAAGAGGATCAAAAGGGAGCGGTATGAGGAGGAGCTAGAGGAGCGGGT 569
||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1148 GATTCCGCTAAACAAGAGAATCAAAAGGGAGCGGTATAAGGAGGAGCTAGAGGAGCGGGT 1207
Query 570 TATTTCCCTGATTGCGTCATTATTTGCTGGGATTTTAAGGGGTTCTAGGAGAGATCGATT 629
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1208 TATTTCCCTGATTGCGTCATTATTTGCTGGGATATTAAGGGGTTCTAGGAGAGATCGATT 1267
Query 630 GTTGAGTAAATTTGTGGAGAATGAATTTGAGAAGATTGACCGGCTCATGGAATTATACAT 689
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1268 GTTGAGTAAATTCGTGGAGAATGAATTTGAGAAGATTGACCGGCTCATGGAATTATATTT 1327
Query 690 GAGATATTCTGATAGGGTTAGATTAGAGGCTGAGAGATTAGACCAGCTTGAGCTTGATGA 749
|||||| |||||||||||||||| |||||| || || |||||||||||||||||||||||
Sbjct 1328 GAGATACTCTGATAGGGTTAGATCAGAGGCGGAAAGGTTAGACCAGCTTGAGCTTGATGA 1387
Query 750 CCTTGAGTTGGATGAAGATGAGAAATATAATCGGGAGCTAGAATCAGGCCTCTA 803
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1388 CCTTGAGTTGGATGAAGATGAGAAATATAATCGGAAGCTAGAATCAGGTCTCTA 1441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5