BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913311 Length=888 Score E Sequences producing significant alignments: (Bits) Value AT1G19060.1 | Symbols: | Protein of unknown function (DUF626) ... 257 1e-67 AT4G17700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 113 2e-24 > AT1G19060.1 | Symbols: | Protein of unknown function (DUF626) | chr1:6582066-6583601 REVERSE LENGTH=864 Length=864 Score = 257 bits (139), Expect = 1e-67 Identities = 293/363 (81%), Gaps = 27/363 (7%) Strand=Plus/Plus Query 523 TTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAGAAAACGAGTTTATGT-GGTGAA 581 |||||| ||||||| || | ||| |||||||||| ||||||||| |||| | |||||| Sbjct 352 TTGCCTCAGTGGCCGTCACATGATTCTTTCAATGATAGAAAACGATTTTA-CTCGGTGAA 410 Query 582 TGAATCAGAGTTGCAAAACACTGATTGGATTTATCTGTATTTGGAACTTGTCA-TTTGTT 640 || || || |||||||||| |||||||||| ||||||||||||||||||| | | ||| Sbjct 411 GGAGTCGGAATTGCAAAACAATGATTGGATTAATCTGTATTTGGAACTTGT-ACTCTGTG 469 Query 641 C-ACGCCATAGG-CAG-ATTTCAGATGGCGATCTGTCCAAGCTGAAGATTGTGAATGTGG 697 | | | | ||| ||| || |||||| |||||||||||||||||||||||||||| | || Sbjct 470 CAATTCAAAAGGTCAGAATCTCAGATAGCGATCTGTCCAAGCTGAAGATTGTGAAAGCGG 529 Query 698 CGATAGAAACTATTGAAGA-AGTGGAGCCGCCGAATGAGAGACTTAACGCCAAA-CGTGC 755 ||||||||| | ||||| | ||| ||| || ||||||||||| ||||||||| | ||| Sbjct 530 TGATAGAAACCAAGGAAGATA-TGGTGCCCCCAAATGAGAGACTCAACGCCAAAAC-TGC 587 Query 756 AATTGTCTACATAACTTTTAAGGGCTTGGCCATTG---GTA--G--GACTAGTGAACAT- 807 | | |||||||||||||||||||| ||||||| || ||| | | || |||| ||| Sbjct 588 AGTGGTCTACATAACTTTTAAGGGATTGGCCAATGCTCGTATTGCTG-CTGGTGAGCATT 646 Query 808 ATTGAACGCAAAGCTAT-AGTTAGAAGAGTCATCAATGAGCGTGA-AGGAT-ACTTGTCT 864 || ||||| |||||||| | |||||||| || ||||||||| | | ||| | |||||||| Sbjct 647 AT-GAACGTAAAGCTATCA-TTAGAAGAATCTTCAATGAGCAT-ACAGG-TCACTTGTCT 702 Query 865 CTC 867 ||| Sbjct 703 CTC 705 > AT4G17700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G17990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:9854322-9855745 FORWARD LENGTH=847 Length=847 Score = 113 bits (61), Expect = 2e-24 Identities = 211/279 (76%), Gaps = 27/279 (10%) Strand=Plus/Plus Query 508 TTCTACAAAGGTAGCTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAG-A-A-AA 564 |||||||||||||| ||||||||||||||||||||||||||||||||||| | | | || Sbjct 436 TTCTACAAAGGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAA 495 Query 565 -CGAGTTTATGTGGTGAATGAATCAGAGTTGCAAA-ACACTGATTGGATTTATCTGTATT 622 ||| |||| |||||||| |||||||| ||| || ||| ||| |||||| | | || Sbjct 496 ACGATTTTACGTGGTGAAAAAATCAGAGCTGCTAACACA-TGACTGGATTCGTTTATACA 554 Query 623 TGGAACTTGTCATTTGTTCAC-GC-CATAGGCAGATTTC--AGATGGC-GA-TCTGTCCA 676 ||||||||| | ||| | | || ||| | |||| | | | | || ||| || | Sbjct 555 TGGAACTTG-C-TTTCCTAAAAGCGCATTTG-AGATCGCCTAAAAATCCGAATCTATCTA 611 Query 677 AGCTGAAGATTGTGAATG-TGGCGATAGAAACTATTGA-AGA-AGTGGAGCCGCCGAA-T 732 || || |||||| | || | ||||||||||||| || | | | |||||||||| || | Sbjct 612 AGTTGGTGATTGTCA-TGGTAGCGATAGAAACTAAAGATA-ATA-TGGAGCCGCC-AAGT 667 Query 733 GAGAGACTTAACGCCA--AACGTGCAATTGTCTACATAA 769 |||||||| || |||| || |||| || ||||||||| Sbjct 668 GAGAGACTCAAGGCCAGGAA--TGCATTTTTCTACATAA 704 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43352068861 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5