BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913311
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19060.1 | Symbols: | Protein of unknown function (DUF626) ... 257 1e-67
AT4G17700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 113 2e-24
> AT1G19060.1 | Symbols: | Protein of unknown function (DUF626)
| chr1:6582066-6583601 REVERSE LENGTH=864
Length=864
Score = 257 bits (139), Expect = 1e-67
Identities = 293/363 (81%), Gaps = 27/363 (7%)
Strand=Plus/Plus
Query 523 TTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAGAAAACGAGTTTATGT-GGTGAA 581
|||||| ||||||| || | ||| |||||||||| ||||||||| |||| | ||||||
Sbjct 352 TTGCCTCAGTGGCCGTCACATGATTCTTTCAATGATAGAAAACGATTTTA-CTCGGTGAA 410
Query 582 TGAATCAGAGTTGCAAAACACTGATTGGATTTATCTGTATTTGGAACTTGTCA-TTTGTT 640
|| || || |||||||||| |||||||||| ||||||||||||||||||| | | |||
Sbjct 411 GGAGTCGGAATTGCAAAACAATGATTGGATTAATCTGTATTTGGAACTTGT-ACTCTGTG 469
Query 641 C-ACGCCATAGG-CAG-ATTTCAGATGGCGATCTGTCCAAGCTGAAGATTGTGAATGTGG 697
| | | | ||| ||| || |||||| |||||||||||||||||||||||||||| | ||
Sbjct 470 CAATTCAAAAGGTCAGAATCTCAGATAGCGATCTGTCCAAGCTGAAGATTGTGAAAGCGG 529
Query 698 CGATAGAAACTATTGAAGA-AGTGGAGCCGCCGAATGAGAGACTTAACGCCAAA-CGTGC 755
||||||||| | ||||| | ||| ||| || ||||||||||| ||||||||| | |||
Sbjct 530 TGATAGAAACCAAGGAAGATA-TGGTGCCCCCAAATGAGAGACTCAACGCCAAAAC-TGC 587
Query 756 AATTGTCTACATAACTTTTAAGGGCTTGGCCATTG---GTA--G--GACTAGTGAACAT- 807
| | |||||||||||||||||||| ||||||| || ||| | | || |||| |||
Sbjct 588 AGTGGTCTACATAACTTTTAAGGGATTGGCCAATGCTCGTATTGCTG-CTGGTGAGCATT 646
Query 808 ATTGAACGCAAAGCTAT-AGTTAGAAGAGTCATCAATGAGCGTGA-AGGAT-ACTTGTCT 864
|| ||||| |||||||| | |||||||| || ||||||||| | | ||| | ||||||||
Sbjct 647 AT-GAACGTAAAGCTATCA-TTAGAAGAATCTTCAATGAGCAT-ACAGG-TCACTTGTCT 702
Query 865 CTC 867
|||
Sbjct 703 CTC 705
> AT4G17700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17990.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:9854322-9855745 FORWARD LENGTH=847
Length=847
Score = 113 bits (61), Expect = 2e-24
Identities = 211/279 (76%), Gaps = 27/279 (10%)
Strand=Plus/Plus
Query 508 TTCTACAAAGGTAGCTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGACAG-A-A-AA 564
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 436 TTCTACAAAGGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAA 495
Query 565 -CGAGTTTATGTGGTGAATGAATCAGAGTTGCAAA-ACACTGATTGGATTTATCTGTATT 622
||| |||| |||||||| |||||||| ||| || ||| ||| |||||| | | ||
Sbjct 496 ACGATTTTACGTGGTGAAAAAATCAGAGCTGCTAACACA-TGACTGGATTCGTTTATACA 554
Query 623 TGGAACTTGTCATTTGTTCAC-GC-CATAGGCAGATTTC--AGATGGC-GA-TCTGTCCA 676
||||||||| | ||| | | || ||| | |||| | | | | || ||| || |
Sbjct 555 TGGAACTTG-C-TTTCCTAAAAGCGCATTTG-AGATCGCCTAAAAATCCGAATCTATCTA 611
Query 677 AGCTGAAGATTGTGAATG-TGGCGATAGAAACTATTGA-AGA-AGTGGAGCCGCCGAA-T 732
|| || |||||| | || | ||||||||||||| || | | | |||||||||| || |
Sbjct 612 AGTTGGTGATTGTCA-TGGTAGCGATAGAAACTAAAGATA-ATA-TGGAGCCGCC-AAGT 667
Query 733 GAGAGACTTAACGCCA--AACGTGCAATTGTCTACATAA 769
|||||||| || |||| || |||| || |||||||||
Sbjct 668 GAGAGACTCAAGGCCAGGAA--TGCATTTTTCTACATAA 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5