BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913314
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31650.1 | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleo... 2595 0.0
> AT1G31650.1 | Symbols: ATROPGEF14, ROPGEF14 | RHO guanyl-nucleotide
exchange factor 14 | chr1:11326301-11330738 REVERSE LENGTH=2255
Length=2255
Score = 2595 bits (1405), Expect = 0.0
Identities = 1570/1650 (95%), Gaps = 9/1650 (1%)
Strand=Plus/Plus
Query 1 ATGATTACATACGACGGCTTGGAGACTTGTATCATCAACAATCAATCATATGAAGAAGAA 60
||||||||||| | |||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 436 ATGATTACATATTATGGCTTGGAAACTTGTATTATCAATAATCAATCATATGAAGAAGAG 495
Query 61 AGCGGAACAAGTCGAGGAGATGGATGCCTGACAGATTCGTTGGATGATGATGCATTTTCA 120
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 496 AGTGGAACAAGTCGAGGAGATGGATGTCTTACAGATTCGTTAGATGATGATGCATTTTCA 555
Query 121 AGCTGTTCATCAAGCAAAGATGCCTCTAGCTCTTTTTCTTCAAAATGGTTACCGATGAAG 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 556 AGCTGTTCATCAAGCAAAGATGCCTCTAGCTCTTTTTCTTCGAAATGGTTACCGATGAAG 615
Query 181 AATGATGAACACAGTTGCGACGGTTTGAACTTATCTGGAAGGTCTCATCATTTTGATGCT 240
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 616 AATGATGAACACAGTTGCGATGGTTTGAACTTATCTGGAAGGTCTCAACATTTTGATGCT 675
Query 241 AA-G-G-AGAAGAAACAAGGCTATGGCAGTACCCAACATTTTGATGGTAAGGAGAAGAAG 297
|| | | |||||||||||||||||||||||| |||||||||||||| ||||||| | ||
Sbjct 676 AAGGAGAAGAAGAAACAAGGCTATGGCAGTAGCCAACATTTTGATGCTAAGGAG-A-AA- 732
Query 298 TCAGGCTATGCCTACTGTCATTTGGATGTGGAAGCCATGAAGGAGAAATTTTCTAAGCTA 357
|||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 733 CCAGGGTATGTGTACTGTCATTTGGATGTGGAAGCTATGAAGGAGAAATTTTCTAAGTTA 792
Query 358 TTGCTCGGCGAAGATGTCACTGGGGGATGCAAGGGTGTCCAAGTAGCTTTGGCTTTGTCA 417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 793 TTGCTCGGCGAAGATGTCACTGGGGGATGTAAGGGTGTCCAAGTAGCTTTGGCTTTGTCA 852
Query 418 AATGCTGTAACACATCTTGCTACGTCGATTTTCGGCGAGCTCTGGAAATTGGAACCCTTG 477
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 853 AATGCTGTAACACATCTTGCTACGTCGATTTTTGGCGAGCTCTGGAAATTGGAACCTTTG 912
Query 478 TGTGAGGAGAAAAAACAGAAATGGAGAAGGGAAATGGATTGGCTACTTTCTCCAACTAAC 537
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TGTGAAGAGAAGAAACAGAAATGGAGAAGGGAAATGGATTGGCTACTTTCTCCAACTAAC 972
Query 538 TACATGATTGAGTTAGTCCCTTCTAAGCAAAATGATGCCAATGGAAGATCACTTGAGATA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TACATGATTGAGTTAGTCCCTTCTAAGCAAAATGATGCCAATGGAAGATCACTTGAGATA 1032
Query 598 ATGACCCCGAAAGCCCGTGCAGACATTCATATGAATCTCCCTGCTCTACAGAAGTTGGAC 657
||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1033 ATGACTCCGAAAGCCCGCGCAGACATTCATATGAATCTCCCAGCTCTTCAGAAGTTGGAC 1092
Query 658 TCCATGCTAATCGAGACACTGGATTCTATGGTGAACACAGAGTTTTGGTATTCTGAGATT 717
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TCAATGCTAATTGAGACACTGGATTCTATGGTGAACACAGAGTTTTGGTATTCTGAGATT 1152
Query 718 GGTAGTAGAGCTGAGGGGAAGAACAAGACTACAAGCGAGAGCAAACGATGGTGGCTTCCA 777
|||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1153 GGTAGTAGAGCTGAAGGGAAGAACAAGAGTACAAGTGAGAGCAAACGATGGTGGCTTCCA 1212
Query 778 TCGCCACAAGTGCCTAAACCCGGGCTCTCTAACTCAGGAAGGAAGAAATTACTTGACAAA 837
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1213 TCGCCACAAGTGCCTAAACCTGGACTCTCTAACTCAGGAAGGAAGAAATTGCTTGACAAA 1272
Query 838 GGCAAAGTTGTTTATCAAGTCTTCAAAGCTACAAAAGCCATAAATGAAAACATTCTTCTT 897
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1273 GGAAAAGTTGTTTATCAAGTCTTCAAAGCTACAAAAGCCATAAACGAAAACATTCTTCTT 1332
Query 898 GAAATGCCAGTACCCGTTGTTATCAAGGAAGCAATACCCAAATCTGGAAAGAACAGCCTC 957
||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1333 GAAATGCCAGTTCCCATTGTTATCAAGGAAGCAATACCTAAATCTGGAAAGAACAGCCTC 1392
Query 958 GGTGATGAACTATACAAGATGTTGGCTGTGGAATCTGCCACAGTAGATGAAATCTTTATA 1017
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1393 GGTGATGAACTGTACAAGATGTTGGCTGTGGAATCTGCAACAGTAGATGAAATCTTTATA 1452
Query 1018 TCTCTCAATCTGGGAACCGAACATGCAGCCCTCGAGACAGTTAACAAGTTAGAATCTGCT 1077
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1453 TCGCTCAATCTGGGAACCGAACATGCAGCACTCGAGACAGTTAACAAGTTAGAATCTGCT 1512
Query 1078 ATATTTGCTTGGAAGGAAAGGATTACAGAACAAGGCAGCAGCGGTAAATCCCCTGTACGA 1137
|| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1513 ATGTTTGCTTGGAAAGAAAGGATTACAGAACAAGGCAGCAATGGTAAATCCCCTGTAAGA 1572
Query 1138 GCATCGTGGTCATTCGCTAAAGATCCATTGTCTGAAATTGGTCGCAATGAGTCACTCTTG 1197
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1573 GCATCGTGGTCATTCGCTAAAGATCCGTTGTCTGAAATTGGTCGCAATGAGTCACTCTTG 1632
Query 1198 AACCGTGCAGAAGCGCTTAGAAATCATATCAAATCCAAACACCCTAATCTTCCTCACTCG 1257
||||| |||||||||||||||| ||| ||||||||||||||||||||||| |||||||||
Sbjct 1633 AACCGAGCAGAAGCGCTTAGAACTCAGATCAAATCCAAACACCCTAATCTCCCTCACTCG 1692
Query 1258 TTTCTTGATGCCACAAAGATCCAATATGGCAAGGACATTGGTCATGCGGTTCTTGAGGCA 1317
||||||||||| |||||||||||||||| ||||||||| |||||||||||||| || |||
Sbjct 1693 TTTCTTGATGCTACAAAGATCCAATATGACAAGGACATAGGTCATGCGGTTCTCGAAGCA 1752
Query 1318 TATTCCCGAACACTTGCGAATCTAGCTTTCCGGATTCTTTCAAGAATGGGAGAAATCTTG 1377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 TATTCCCGAACACTTGCGAATCTAGCTTTCCGGATTCTTTCAAGAATGGGAGAAATCTTG 1812
Query 1378 AAAGAAGATTCTTTAAGCAACCCTAACTCTCCTGCACCACCGAGTTGCTTCCCTAGCTCC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 AAAGAAGATTCTTTAAGCAACCCTAACTCTCCTGCACCACCGAGTTGCTTCCCTAGCTCC 1872
Query 1438 CGTGACCCTTACAGAACACCCGAGAGGCCTTTGCTTTCATCCCGTGTAATGCATTCTTTA 1497
||||||||||| || ||||| ||||| ||| ||||||| |||||||||| ||||||||||
Sbjct 1873 CGTGACCCTTATAGGACACCTGAGAGACCTCTGCTTTCGTCCCGTGTAAGGCATTCTTTA 1932
Query 1498 ACCGATGACATGAACAAAGCCGATGGGACAGAGACTGGTTTAGATTTTTTGTTTGCAGAT 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1933 ACCGATGACATGAACAAAGCCGATGGGACAGAGACTGGTTTAGATTTTTTGTTTGCAGAT 1992
Query 1558 GCTAAGGCAAGT--T-CAGTGAATACAACTCCAAGTAGAAGCAGTAGACTGTGGTGTTTG 1614
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1993 GCTAAGGCAAGTAATTCAGTGAATACAACTCCAAGTAGAAGCAGTAGACTGTGGTGTTTG 2052
Query 1615 AGTAAAGTGCCTTCTGATACTTCTTCTTGA 1644
|||||||||||||||||||||||| |||||
Sbjct 2053 AGTAAAGTGCCTTCTGATACTTCTCCTTGA 2082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81224481810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5