BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913323
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32660.1 | Symbols: | F-box and associated interaction doma... 484 5e-136
AT1G31620.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 147 3e-34
> AT1G32660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:11811040-11812380 FORWARD LENGTH=1341
Length=1341
Score = 484 bits (262), Expect = 5e-136
Identities = 620/782 (79%), Gaps = 67/782 (9%)
Strand=Plus/Plus
Query 14 CTAGATTGCCTGCCAAGTCTCTTATGAAGTTGCGACGCGTGTCAAAGATATGGTCTTCCA 73
||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 218 CTAGAATCCCTGCCAAGTCTCTTATGAAGTTGCGATGCGTGTCAAAGATGTGGTCTTCCA 277
Query 74 TCATCCGAAGCCGAGGGTTCATTAATTCCTTCTACTCTATATCCTCGAAGCAATCGCGGT 133
|||||||||||||||| |||||| |||||| |||| |||| |||||||||||||| ||||
Sbjct 278 TCATCCGAAGCCGAGGTTTCATTGATTCCTACTACGCTATCTCCTCGAAGCAATCACGGT 337
Query 134 TTATAGTCGCTTTGAGTAACAG-TGTATTCGGCAAGCCTGCGGAGAAACTTACCTTCTTC 192
||||||||| |||||||||| | || ||| | |||||| | || | ||||||||| ||
Sbjct 338 TTATAGTCGGTTTGAGTAAC-GCTGCATTTAACGAGCCTGAGAAGCAGCTTACCTTCCTC 396
Query 193 TTCTTGTTTTCCCACGATGACGGAGATGA---CT-CTTCTTCTT-T--GCTACCCAACTT 245
|||| |||||||||||| |||||||| || || ||||||||| | | ||||||||||
Sbjct 397 TTCTCGTTTTCCCACGAAGACGGAGA-GAAGTCTTCTTCTTCTTCTTTGGTACCCAACTT 455
Query 246 CGAGATGGCAATTCCCAACTGCAGCTTTAG-TGGCTTCTCATA-T-TT-GGCTTCTTTCC 301
|||||||||| ||||| |||||||| || |||| ||||| | | || |||||||||||
Sbjct 456 CGAGATGGCAGTTCCC---TGCAGCTT-AGCTGGCCTCTCACACTCTTTGGCTTCTTTCC 511
Query 302 ATGGCATTCTCGCTGTTAGAGCAGACCATAAGTGGTTGATGTGTAACCCTAGCACGGAGC 361
||||||||||||||||| || || |||| | | |||||||||||||| ||||||||
Sbjct 512 ATGGCATTCTCGCTGTT-GA--AGG---TAAG-G-T-GATGTGTAACCCTAACACGGAGC 562
Query 362 AATTCGTTAAGTTACCCGCT---ACCACTGCTTTCGTGGGATACGATCCCATTGATGATC 418
||||| || |||||||| | |||| | |||| ||||| |||||||| ||||| ||||
Sbjct 563 AATTCACTACGTTACCCGTTGGCACCA-T-CTTT-GTGGGGTACGATCCGATTGACGATC 619
Query 419 AATACAAAGTATTATCCTG-GAATA-GA-ACTAGGTATGATTCTAATGGTCATCTGCAGC 475
||||||||| | || || | || | || | | || ||||| | || || |
Sbjct 620 AATACAAAGCGCTCGGCTTTGATTTTGATAAGAGATGTCATGGTAATGCT-AT-TGGT-C 676
Query 476 ACAAGGTATTA-ACATTGGGAGATGGTGAAGTA-TGGAGACACATTAAAGAT-ACCCCTT 532
||||||| || |||||||||| |||||||| | || ||||| |||| || | ||| ||
Sbjct 677 ACAAGGT-TTGGACATTGGGAGGTGGTGAAGGAATG-AGACAGATTAGAGGTGACC--TT 732
Query 533 T-ACCTTATA--CTTATAGGGCGACTCAAACAAATATATGCGTCAACGGTTTTCTCTACT 589
|||||||| | ||| | ||| | ||||| ||||| |||||||| || ||||||
Sbjct 733 GCACCTTATAGACCGATA---CTACT-AC-CAAATGTATGCATCAACGGTGTTATCTACT 787
Query 590 ATGTTGCT--TGG-TTAACCCAAACTAAAGATATGGTT-TTGGTTTGTTTTGATGTTAGA 645
||| |||| | ||| ||||||| |||||| ||| ||| | |||||||||||||||
Sbjct 788 ATGGTGCTCATACCTTATCCCAAACCAAAGATCCAGTTATTG-TGTGTTTTGATGTTAGA 846
Query 646 TCTGAGAAACTGAGTTTTATCAATGCACCTAAGGATGTTGTGCAAT-GGGGAAGGAAAG- 703
||||||||||| |||||||||| ||||||| || ||| | |||| ||||| | || |
Sbjct 847 TCTGAGAAACTAAGTTTTATCACTGCACCTGCGGTTGTCCTCCAATCGGGGATG-AA-GT 904
Query 704 C-AGTATTCATAGAATACAAAGGGAAGCTTGCTTCCATTGTGAGAGAC-CCTTATGGTCG 761
| | || ||||||| |||||||||||||| ||||| ||||||||| || ||| |||| |
Sbjct 905 CTA-TACTCATAGACTACAAAGGGAAGCTAGCTTCTATTGTGAGAAACTCCTG-TGGTGG 962
Query 762 TT 763
||
Sbjct 963 TT 964
Score = 183 bits (99), Expect = 2e-45
Identities = 202/248 (81%), Gaps = 22/248 (9%)
Strand=Plus/Plus
Query 770 GCACCAACAAGGCTGGTGAGATCATTATGGCCCCAAAGAGGTTGTCATC-CGATTTTCGA 828
|||||||||||||||||||||||||||| ||||||| | |||||| | |||| ||||
Sbjct 1088 GCACCAACAAGGCTGGTGAGATCATTATTGCCCCAATGTTTTTGTCA-CGCGATGTTCGG 1146
Query 829 CCCTTCTACATTTTCTACTACATTGTTGAAACAAAAAACATAAGAAGAGTTAGGCTCCTA 888
||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||| |
Sbjct 1147 TCCTTCTACATTTTCTACTATAATGTTGAAACAAAAACCATGAGAAGAGTTAGGCTCCGA 1206
Query 889 GGAATTGGA-GAC-AGTGA-AGAGTTTAGGCGCTCTTATGGATTCC-AAAGGACGGCCGG 944
||||||||| | | | | | ||||||||||||||||||||||| || ||| | | |
Sbjct 1207 GGAATTGGAAG-CGA-T-ATAGAGTTTAGGCGCTCTTATGGAT-CCGAAAACAAGTT-G- 1260
Query 945 CTCCCGTCAATCT-CT-TGTTC-TGATCGCACATCAACACGTCGAGAGTGTTGGCTTTTT 1001
| || ||| | | ||| | | ||||||||||||||||| |||||| ||| ||||||
Sbjct 1261 -T---GT-AAT-TGCCATGTCCGT-ATCGCACATCAACACGTTGAGAGTATTGCCTTTTT 1313
Query 1002 TAAGGATC 1009
|||||||
Sbjct 1314 AAAGGATC 1321
> AT1G31620.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:11316941-11317894 FORWARD LENGTH=336
Length=336
Score = 147 bits (79), Expect = 3e-34
Identities = 94/101 (93%), Gaps = 2/101 (2%)
Strand=Plus/Plus
Query 643 AGATCTGAGAAACTGAGTTTTATCAATGCACCTAAGGATGTTGTGCAATGGGGAAG-GAA 701
||| ||||||||||||||||||||||||||| ||||| | |||||||||||||||| | |
Sbjct 160 AGAACTGAGAAACTGAGTTTTATCAATGCACTTAAGGGTTTTGTGCAATGGGGAAGTG-A 218
Query 702 AGCAGTATTCATAGAATACAAAGGGAAGCTTGCTTCCATTG 742
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 219 AGCAGTATTCATTGAATACAAAGGGAAGCTTGCTTCCATTG 259
Score = 111 bits (60), Expect = 1e-23
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 893 TTGGAGACAGTGAAGAGTTTAGGCGCTCTTATGGATTCCAAAGGACGGCCGGCTCCCGTC 952
|||||||||||||||||||||||||||||||||||||| |||| || |||||||||||
Sbjct 262 TTGGAGACAGTGAAGAGTTTAGGCGCTCTTATGGATTCGAAAGAACCTCCGGCTCCCGTG 321
Query 953 AATCTCTTGTTCTGA 967
|||||||||||||||
Sbjct 322 AATCTCTTGTTCTGA 336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5