BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913338
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31450.1 | Symbols: | Eukaryotic aspartyl protease family p... 1906 0.0
> AT1G31450.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr1:11259872-11261209 REVERSE LENGTH=1338
Length=1338
Score = 1906 bits (1032), Expect = 0.0
Identities = 1249/1351 (92%), Gaps = 26/1351 (2%)
Strand=Plus/Plus
Query 1 ATGGCAACCAAAACTCTCCTCTACTGTTCGCTCTTAGCCATCACCATCTT-TTTCACTTC 59
||||||||||||||| | ||||||||||| ||||||||||||| | |||| ||| ||||
Sbjct 1 ATGGCAACCAAAACTTTTCTCTACTGTTCTCTCTTAGCCATCAGCTTCTTCTTT-GCTTC 59
Query 60 CACTTCTTCAGCTCACCGGA-AAAACCTAACCGTCGAGCTAATCCACCGTGACTCTCCCC 118
|| |||||||||| ||| || | ||| ||||||||||||||||||||||||||||||| |
Sbjct 60 CAATTCTTCAGCTAACC-GAGAGAACTTAACCGTCGAGCTAATCCACCGTGACTCTCCTC 118
Query 119 ATTCTCCACTCTACAACCCTCAGCACACTGTCTCCGACCGTCTCAACGCCGCTTTCCTCC 178
|||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 119 ATTCTCCACTCTACAACCCTCACCACACTGTCTCTGACCGTCTCAACGCTGCTTTCCTCC 178
Query 179 GCTCAATCTCACGTTCCCGCCGTTTCTCAACCAAAACCGATCTCCAATCCGGTTTAATCT 238
| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 GATCAATCTCACGTTCTCGCCGTTTCACAACCAAAACCGATCTCCAATCCGGTTTAATCT 238
Query 239 CAAATGGCGGCGAATACTTCATGTCCATCTCAATCGGTACTCCACCGTCGAAA-TTCCTT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 239 CAAATGGCGGCGAATACTTCATGTCCATCTCAATCGGTACTCCACCGTCGAAAGTT--TT 296
Query 298 -GCCATTGCTGACACGGGAAGTGACCTAACATGGGTTCAGTGCAAGCCATGTCAACAATG 356
||||||||||||||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 297 CGCCATTGCTGACACGGGAAGTGACCTAACTTGGGTCCAATGTAAGCCATGTCAACAATG 356
Query 357 TTACAAGCAAAACACTCCACTCTTCGACAAGAAGAAATCTTCCACCTACAAAACTGAATC 416
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 TTACAAACAAAACAGTCCACTCTTCGACAAGAAGAAATCTTCCACCTACAAAACAGAATC 416
Query 417 TTGTGATTCCATAACCTG-CAATGCGTTGTCTGAACACGAAGAAGGTTGCGACGAATCGC 475
||| ||||| | |||||| ||| || ||||| |||||||||||||| |||||||||||
Sbjct 417 TTGCGATTCAAAAACCTGTCAA-GCCTTGTCCGAACACGAAGAAGGATGCGACGAATC-T 474
Query 476 GCA-ACGCCTGCAAATACCGTTACTCTTATGGAGACGAA-TCGTTTACCAAAGGAGAGGT 533
| || ||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 475 AAAGACATCTGCAAATACCGTTACTCTTATGGAGA-TAATTCGTTTACCAAAGGAGATGT 533
Query 534 TGCAACCGAAACAATCTCCATTGATTCTTCCTCTGGCTCCCCTGTTTCTTTCCCCGGTAC 593
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 534 TGCGACCGAAACAATCTCCATTGATTCTTCCTCTGGCTCCTCTGTTTCTTTCCCCGGTAC 593
Query 594 TGCCTTTGGTTGCGGCTACAACAACGGTGGTACATTCGAAGAAACCGGATCCGGAATCAT 653
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TGTCTTTGGTTGCGGCTACAACAACGGTGGTACATTCGAAGAAACCGGATCCGGAATCAT 653
Query 654 CGGACTCGGAGGTGGTCCATTATCGTTAGTTTCCCAGCTCGGTTCTTCCATAGGGAAGAA 713
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 654 CGGACTCGGAGGTGGTCCATTATCGTTAGTTTCCCAGCTTGGTTCTTCCATAGGGAAGAA 713
Query 714 ATTCTCTTATTGCTTGTCACACACGTCAGCTACAACAAACGGCACAAGCGTCATAAACCT 773
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 714 ATTCTCGTATTGCTTGTCACACACGGCAGCTACAACAAACGGCACAAGCGTCATAAACCT 773
Query 774 AGGAACCAACTCGATGAC-TTCCAAGCCAAGCAAAGATTCCGCTATTCTCACTACACCGT 832
||||||||||||||| || |||||| ||||||||||| ||||||| ||||||||||| |
Sbjct 774 AGGAACCAACTCGAT-ACCTTCCAATCCAAGCAAAGACTCCGCTACGCTCACTACACCCT 832
Query 833 TAATCCAAAAAGACCCCGAGACTTACTATTTCTTGACTCTCGAAGCAATCACCGTCGGCA 892
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 833 TAATCCAAAAAGACCCCGAGACTTACTATTTCTTGACACTCGAAGCAGTCACCGTCGGCA 892
Query 893 AAACCAAGCTTCCATACACCGGAGGAGGAGGGTACAGTTTAAACCGGAAATCA--AA-GA 949
||||||||||||||||||||||||||||| ||| | |||||| |||||||| || ||
Sbjct 893 AAACCAAGCTTCCATACACCGGAGGAGGA---TACGGATTAAACGGGAAATCATCAAAGA 949
Query 950 AGA-CCGGTAACATCATAATCGACTCCGGCACAACTCTTACGCTTCTCGACTCAGGATTT 1008
|| |||| |||||||||||||| ||||| ||||| ||||| ||||||||||||||||||
Sbjct 950 -GAACCGGAAACATCATAATCGATTCCGGTACAACCCTTACCCTTCTCGACTCAGGATTT 1008
Query 1009 TATGATGACTTTGGTGCGGTGGTGGAAGAATCAGTGACCGGAGCTAAGCGTGTGAGTGAT 1068
|| |||||||||||| ||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 1009 TACGATGACTTTGGTACGGCCGTGGAAGAATCAGTAACCGGAGCAAAGCGTGTGAGTGAT 1068
Query 1069 CCACAAGGGATTTTAACACACTGTTTCAAATCCGGAGACAAAGAGATCGGTTTGCCGACA 1128
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1069 CCACAAGGGCTTTTAACACATTGTTTCAAATCCGGAGACAAAGAGATCGGTTTGCCGGCG 1128
Query 1129 ATAACAATGCATTTCACCGGA-GCCGACGTGAAGCTGAGTCCGATAAACTCGTTCGTGAA 1187
||||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||
Sbjct 1129 ATAACAATGCATTTCAC-GAACGCCGACGTGAAGCTGAGTCCGATAAACGCGTTCGTGAA 1187
Query 1188 ACTGAGTGAAGATATAGTGTGCTTGAGTATGATTCCGACAACTGAAGTTGCTATATACGG 1247
||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 ACTAAATGAAGATACAGTGTGCTTGAGTATGATTCCGACAACTGAAGTTGCTATATACGG 1247
Query 1248 AAATATGGTTCAAATGGATTTTCTTGTTGGCTATGACTTGGAGACCAAAACGGTATCGTT 1307
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1248 AAACATGGTTCAAATGGATTTCCTTGTTGGCTATGACTTGGAGACCAAAACGGTATCGTT 1307
Query 1308 TCAACGCATGGATTGCTCCGGGAACTTGTGA 1338
||||||||||||||||||||||||||| |||
Sbjct 1308 TCAACGCATGGATTGCTCCGGGAACTTATGA 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65863115040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5