BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913356
Length=3333
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31290.1 | Symbols: AGO3 | ARGONAUTE 3 | chr1:11188293-11192... 2819 0.0
AT1G31280.1 | Symbols: AGO2 | Argonaute family protein | chr1:1... 2348 0.0
> AT1G31290.1 | Symbols: AGO3 | ARGONAUTE 3 | chr1:11188293-11192317
FORWARD LENGTH=3585
Length=3585
Score = 2819 bits (1526), Expect = 0.0
Identities = 2382/2780 (86%), Gaps = 119/2780 (4%)
Strand=Plus/Plus
Query 624 AGGCGCGTGGGCTCGTAGGCCACAACTTTTCTCTGATTCGGCGGTCTTGCCTTC---TTC 680
||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| |||
Sbjct 855 AGGCGCGTGGGCTCGTAAGCCTCAACTTTTCTCTGATTCGACGGTCTTACCTTCTAGTTC 914
Query 681 TTCGTCGACCGTCGTGGCTTCTCAAACCGCTAGTGGTTCTCAAGTTATGACTCCGAAGCC 740
|||||| | |||||| |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 915 TTCGTCTAACGTCGTTGCTTCTCACACCGCTAGTGGTTCTCAAGTTATGACTCCGAAACC 974
Query 741 ATCTTCTTCTGATAAGAAAGAACCAATGAAGCGTCCTGATAGAGGTGGTAGTA-AGCTTG 799
||||||||||||||||||||||||| | ||||||||||||| |||||||| || | |
Sbjct 975 ATCTTCTTCTGATAAGAAAGAACCAGTAAAGCGTCCTGATAAAGGTGGTAATATA-AAAG 1033
Query 800 TGCAACGCGT-A--AATCTCTCTGTCAATCATTTCA-ATGTGAGTTTCCCTTCTGAAAGT 855
|| || |||| | |||||||| ||||||||||| | | |||||||| | || ||
Sbjct 1034 TGAAAGGCGTAATTAATCTCTCCGTCAATCATTTTAGA-GTGAGTTT--C-TC---AACA 1086
Query 856 GAAAGTGTCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATCCTTTAAAAAAGATA 915
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1087 GAAAGTGTCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATTCTTCAAAAAAGATA 1146
Query 916 TCAAGATATGAGCTAGCTATGGTCAAAGAGAAGGTGTTCACCGACAATCCCGATAAGTTT 975
||||||| ||||||||||||||||||||| ||| |||||| |||||| || | |||
Sbjct 1147 TCAAGATTTGAGCTAGCTATGGTCAAAGAAAAGCTGTTCAAGGACAAT---AATGACTTT 1203
Query 976 CCCT-TCGCTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGTC 1034
||| ||| |||||||| || |||||||||||||||||||||||||| | |||||| |
Sbjct 1204 -CCTAACGCCATGACAGCGTACGATGGTCAGAAGAACATTTTCAGCGCTGTTGAATTACC 1262
Query 1035 TACAGGTTCATATAAGGTGGAGTTCCCTGAAACTGATGAG---ATGAGAGCTCGAAGCTA 1091
||| || |||| ||| || || ||| | ||||| || ||| ||||||| | |||||||
Sbjct 1263 TACGGGATCATTTAAAGTTGATTTCTCAGAAACCGAGGAGATCATGAGAGGTAGAAGCTA 1322
Query 1092 TACATTCACCATCAAACAGGTGAATGATGAGCTTAAGCTACGTGACTTGGAAGACTACAT 1151
||| |||| ||||||||| ||||| | ||||| ||| ||| ||||||| ||| ||||||
Sbjct 1323 TACGTTCATCATCAAACAAGTGAA--A-GAGCTAAAGTTACTTGACTTGCAAGCCTACAT 1379
Query 1152 AAG-GGGAAGTTCCTCTTTCATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGA 1210
|| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 -AGATGGACGTTCCACTTTTATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGA 1438
Query 1211 AGGAACATCCTTCAAAGCGTATGATGACTGTTGGTAAAAGCTT-TTTC--ACTCGTGAGC 1267
|||||||||||||||| |||||||| |||||||||||||| || ||| ||||| | |
Sbjct 1439 AGGAACATCCTTCAAAACGTATGATCACTGTTGGTAAAAGATTCTTTAGTACTCG-G--C 1495
Query 1268 CAGATGAA-GACTTTCGCTTCGGGGTTGTAGCTGCGAAAGGGTATCGCCACACTCTAAAG 1326
||| || |||||| | | ||| |||| |||||||||||||| || ||||||||| |||
Sbjct 1496 TAGA-GATTGACTTTGGATACGGAGTTGGAGCTGCGAAAGGGTTTCACCACACTCTCAAG 1554
Query 1327 CCCACAGCACAAGGTTTGTCTTTGTGTTTGGACTACTCGGTT-TTGGCATTCCGCAATGC 1385
||||||| ||||||||| || || |||||| ||| ||| || ||||| |||||||| ||
Sbjct 1555 CCCACAGTACAAGGTTTATCATTATGTTTGAACTCCTCT-TTGTTGGCGTTCCGCAAAGC 1613
Query 1386 AATGTCGGTCATTGACTACCTGAAGTTGTACTTTGGCTGGTCCGATATGCGTCAGTTTAG 1445
||| || ||||| || |||||||||||||||||||| ||| |||| ||||||||||
Sbjct 1614 AATTTCAGTCATCGAATACCTGAAGTTGTACTTTGGGTGGAGAAATATACGTCAGTTTAA 1673
Query 1446 GAATTGTAGGCGTGATG---TGGAA-AAGGAACTGACTGGTTTGAAAGTCACTGTTAACC 1501
||||||||||| ||||| ||| | ||| || ||| ||||||||||||||||||| | |
Sbjct 1674 GAATTGTAGGCCTGATGACGTGGTACAAG-AATTGATTGGTTTGAAAGTCACTGTTGATC 1732
Query 1502 ATCGGAAGAACAAGCAGAAACTCACCATTGTAGGGTTGAGTGAGTACAACACAAAAGATA 1561
|||| |||| ||| |||||| ||| |||| | ||||||||| || || ||||||||||||
Sbjct 1733 ATCGAAAGACCAAACAGAAATTCATCATTATGGGGTTGAGTAAGGACGACACAAAAGATA 1792
Query 1562 TCACATTCGATCTTATTGATCATGCGGGAGACGAGCCTCCAAGGAAAGTATCCATTGTTA 1621
||| ||||||| ||||||||||||| ||| || |||||||||||||| |||||||||||
Sbjct 1793 TCAAATTCGATTTTATTGATCATGCTGGAAACCAGCCTCCAAGGAAAATATCCATTGTTG 1852
Query 1622 AGTATTTCATGGAAAAGTATGGAAAAGACATCCGTT-ACAAGGATATTCCTTGCCT-AAG 1679
||||||||| |||||||||||||| |||||| | | ||||||||||||||||| | ||
Sbjct 1853 AGTATTTCAAGGAAAAGTATGGAAGAGACATT-GATCACAAGGATATTCCTTGCTTGAA- 1910
Query 1680 TTTGGGGAAAAAAGGTCGGCAAAATTATGTACCCATGGAGTTTTGTAACTTGGTCGAGGG 1739
|||||||||||| |||||| |||||| ||||||||||||||| |||||||| ||||||||
Sbjct 1911 TTTGGGGAAAAAGGGTCGGGAAAATTTTGTACCCATGGAGTTCTGTAACTTAGTCGAGGG 1970
Query 1740 GCAGATTTATCCAAAAGAAAAATTG-A-AGGGTAATTCAGCTTCCCGGTTAAAACA-CTT 1796
|||||||| ||||||||| |||||| | || | | |||||| | ||||||| | |||
Sbjct 1971 GCAGATTTTTCCAAAAGAGAAATTGTATAGAG-A-TTCAGCCGCGTGGTTAAAGGAGCTT 2028
Query 1797 GTCCCTTGTCAATCCACAACGAAGGAA-GGAGAATATAGAA-AATATGATAAAG-CTTAG 1853
|| || |||| |||||||| ||| | |||||||||| || || ||||||||| || ||
Sbjct 2029 -TCACTAGTCACTCCACAACAAAG-ACTGGAGAATATA-AATAAGATGATAAAGTCT-AG 2084
Query 1854 GGATGGACCAAGCGGTGGAGATATCATTGGGAATTTTGGACTGAAAGTGGCTACAAACAT 1913
|||||||| || ||||||||||||||||| || || ||| ||| ||||| | |||||||
Sbjct 2085 TGATGGACCTAGAGGTGGAGATATCATTGGAAACTTCGGATTGAGAGTGGATCCAAACAT 2144
Query 1914 GACAACGGTGGAAGGTCGTGTACTCAAGGCTCCTACACTGATGTTGACTGATCAGAAAGG 1973
||||||||||||||||||||||||| ||||||||||||||| |||||||||| || |||
Sbjct 2145 GACAACGGTGGAAGGTCGTGTACTCGAGGCTCCTACACTGAAATTGACTGATCGGAGAGG 2204
Query 1974 AAATCCTGTC-ACTGAGGAACCCC-G--CAAGAACAATCAATGGAACCTTACAATAAAGC 2029
|||||| || | |||| ||| | | | ||| |||||||||||||||||| | ||||
Sbjct 2205 CAATCCTATCCA-TGAGAAACTCATGAGCGAGAGCAATCAATGGAACCTTACGACAAAGG 2263
Query 2030 GAGTTACAAAGGGTTCAA-AAGTCAAGCATTGGGCTGTTCTTGATTTCACCGCGTCTAAG 2088
|||| ||||||||||||| || |||||||||||||||||||||| ||||| || || ||
Sbjct 2264 GAGTCACAAAGGGTTCAATAA-TCAAGCATTGGGCTGTTCTTGACTTCACTGCATCCGAG 2322
Query 2089 AAGCC-GCACAATTACAAGATGCCTGATAACTTTGTTGAGGAACTCACTGCG--CGTTGT 2145
| | | | || | |||||||||| | ||||||| | |||||| | || ||||||
Sbjct 2323 A-GTTTGAAAAA--A-AAGATGCCTGGTTACTTTGTAAATAAACTCA-T-CGAACGTTGT 2376
Query 2146 TCCAGACTTGGGATG-ACGTTGGAGAATCCTATCGTTCGCAAAACATTAAGTATGGATAC 2204
||||||||||| | | ||||| |||||||||| ||||||||| |||||||| ||
Sbjct 2377 AAGGGACTTGGGATGCA-GATGGAGGCTCCTATCGTTTGCAAAACATCGAGTATGGAAAC 2435
Query 2205 GCTTTCTAATGGTAATGATCTTGAGGAATTGCTTCGATCCGTGATTGATGAGGCTT-TAC 2263
|||| | ||||||||| ||||||||||||||||||||||||||| |||||||||| | |
Sbjct 2436 ACTTTATGATGGTAATGCTCTTGAGGAATTGCTTCGATCCGTGATAGATGAGGCTTCT-C 2494
Query 2264 TTAACTATCG-GG--CTCGTCCAACTCTTGTTCTGTGTGCTATGTCTGGGAAAGT-CGAT 2319
|||| || | || || |||||||||||||||||||||||||| ||||||| | ||||
Sbjct 2495 ATAACCATGGTGGGGCTTGTCCAACTCTTGTTCTGTGTGCTATGACTGGGAA-GCACGAT 2553
Query 2320 GGCTACAAGACTCTGAAATGGCTAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTC 2379
|| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2554 GGATACAAGACTCTGAAATGGATAGCCGAGACCAAACTTGGTCTAGTGACTCAGTGTTTC 2613
Query 2380 TTGACCGGT-TCTGCGAATAGGGGAG-----GT----GATCAGTACTTGGCAAATCTCGC 2429
|||||| | ||||| | || |||| || |||||||||||||||||||||||
Sbjct 2614 TTGACCA-TATCTGCCATTAAAGGAGAAACCGTTTCTGATCAGTACTTGGCAAATCTCGC 2672
Query 2430 CCTCAAGATAAACGCAAAGGTTGGTGGAACGAACGTGGAGCTGGTGGACAATTATTT-CT 2488
|||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| ||
Sbjct 2673 CCTCAAGATAAACGCAAAGGTTGGTGGAACGAACGTGGAGTTGGTGGATAAT-ATTTTCT 2731
Query 2489 CTTTCTTCAATGAAGAAGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTG 2548
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2732 CTTTCTTCAAAAAAGAAGATAAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTG 2791
Query 2549 CTCACGACAAGATGAGTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAG 2608
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2792 CTCACGACAATATGAGTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAG 2851
Query 2609 CTAACCGCTACGCAGCTAGAGTCAAAGCTCAGACTCACCGTAAAGAAGAGATACAAGGGT 2668
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2852 CTAACCGCTACGCAGCTAGAGTCAAAGCTCAGAGTCACCGTAAAGAAGAGATACAAGGGT 2911
Query 2669 TTGGTGAAACTTGCTTAGAGCTTGTC-AATGCTCATTCTAATGCCACCAAGAAACGACCT 2727
||||||||||||||| |||||| || || ||||||||| | ||| || |||||||||||
Sbjct 2912 TTGGTGAAACTTGCTGGGAGCTTATCGAA-GCTCATTCTCAGGCCCCCGAGAAACGACCT 2970
Query 2728 AACAAGATTGTGATATTCCGTGATGGTGTCAGTGATGGTCAGTTCGATATGGTTCTCAAT 2787
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2971 AACAAGATTGTGATATTCCGTGATGGTGTCAGCGATGGTCAGTTCGATATGGTTCTCAAT 3030
Query 2788 GTGGAGTTACAGAATGTTAAGGACACTTTTAAAAAGATTGAATATAATCCGTTGATAACG 2847
|||||||||||||||||||||||| |||| ||| ||| ||||||||| ||||||
Sbjct 3031 GTGGAGTTACAGAATGTTAAGGACGTTTTTGCCAAGGTTGGCTATAATCCGCAGATAACT 3090
Query 2848 GTAATTGTGGCACAGAAGCGTCATCAAACCCGTTTCTTCCCTGCCACAA---GCAATGAT 2904
||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||
Sbjct 3091 GTAATTGTGGCACAGAAACGTCATCAAACCCGTTTCTTCCCCGCCACAACTAGCAAAGAT 3150
Query 2905 --AAGG---A----CAATGTGCTTTCAGGTACGGTCGTTGATACAAAGATCATTCACCCA 2955
|||| | |||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct 3151 GGAAGGGCTAAGGGCAATGTGCCTTCAGGTACGGTCGTTGATACCACGATCATTCACCCG 3210
Query 2956 TTTGAGTATGATTTCTATCTCTGCAGTCACCACGGAGGGATTGGGACAAGCAAACCAACT 3015
||||||||||||||||| ||||| ||||| || |||| ||| || |||||||||||||||
Sbjct 3211 TTTGAGTATGATTTCTACCTCTGTAGTCAACATGGAGCGATAGGTACAAGCAAACCAACT 3270
Query 3016 CATTACTATGTTCTGTACG-ACGAAATCGGGTTCAAGTCGGATCAGATTCAGAAGCTCAT 3074
||||| |||||||| | || |||||||||||||||| ||| ||||||||||||| |||||
Sbjct 3271 CATTATTATGTTCTTT-CGGACGAAATCGGGTTCAACTCGAATCAGATTCAGAAACTCAT 3329
Query 3075 ATTTGACGTGTGCTTCACGTTTACTCGCTGCACCAAACCTGTCGCTCTGGTTCCTCCAGT 3134
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 3330 CTTTGACTTGTGCTTCACGTTTACTCGCTGCACCAAACCGGTCGCTCTGGTTCCTCCGGT 3389
Query 3135 TTCTTATGCTGACAAGGCTGCTTCTAGAGGAAGGTTGTACTACGAGGCAAGCTTTATGGA 3194
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 3390 TTCTTATGCTGACAAGGCTGCTTCTAGAGGAAGGGTGTACTACGAGGCAAGCTTAATGAA 3449
Query 3195 GAAGAACTCTAAGCAGTCGCGTGGAGCGTCTTCATCTTCTGCTGCTTCGGTTGCCTCTTC 3254
|||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 3450 GAAGAATTCTAAGCAGTCGCGTGGAGCGTCTTCGTCTTCTGC--CT-CGGTTGCCTCTTC 3506
Query 3255 ATCCTCTTCTCTCACAGTGGAGGACAAAGAGATCTTCAAAGTTCACACAGAG-ATTGAGA 3313
|||||||||| ||||| |||||||||||||||||||||| |||||| ||| | || ||||
Sbjct 3507 ATCCTCTTCTGTCACAATGGAGGACAAAGAGATCTTCAAGGTTCACGCAG-GCATCGAGA 3565
Query 3314 ACAATATGTTCTTCGTCTGA 3333
|| ||||||||| ||||||
Sbjct 3566 ACTTTATGTTCTTTGTCTGA 3585
Score = 294 bits (159), Expect = 3e-78
Identities = 239/276 (87%), Gaps = 11/276 (4%)
Strand=Plus/Plus
Query 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70
||||||| | | | |||||||||||||||| ||| |||||||||| |||| |||||||||
Sbjct 236 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCATGGCAGAGGCGGCGGCGGAGATCGTGGTC 292
Query 71 GTGGTTACAGCGGTCGTGGTCGTGGCTTCGATCAAGACAGAGATGGTGGTTTGGTAAATC 130
|||||||||||||||||||||||||||| | |||||| || |||||||||| ||||||||
Sbjct 293 GTGGTTACAGCGGTCGTGGTCGTGGCTTTGTTCAAGATAGGGATGGTGGTTGGGTAAATC 352
Query 131 GAGGGCAGAGTTCCGGTGGTCAGGTTCACGGTGGTCGTGGGACGCAATTGCAACAACCTC 190
|||||| ||||| |||||||| |||| | ||||||||||||||| |||||||||||||
Sbjct 353 CAGGGCAAAGTTCAGGTGGTCATGTTC--G-TGGTCGTGGGACGCAGTTGCAACAACCTC 409
Query 191 GGCCACAGGCGGTTTCTCAGTCGTCTTCGCAGGTTCAAGTGACTCAAGGCGTTGTAGCC- 249
|||||||| ||| ||| |||||| ||||| | |||||||| ||||||||||| | ||
Sbjct 410 CGCCACAGGAAGTTCCTCCGTCGTCGTCGCAAGCTCAAGTGAGTCAAGGCGTTGCA-CCA 468
Query 250 GGAGGCGTGGGT-AGAGGCGGCGTCGGAGACCGTGG 284
|||| ||||||| | |||||||||||||||| ||||
Sbjct 469 GGAGACGTGGGTCA-AGGCGGCGTCGGAGAC-GTGG 502
Score = 180 bits (97), Expect = 9e-44
Identities = 147/171 (86%), Gaps = 4/171 (2%)
Strand=Plus/Plus
Query 249 CGGAGGCGTGGGTAGAGGCGGCGTCGGAGACCGTGGTCAGAGTCAGTGGGGACC-TCCGC 307
||||| |||||||||||||||||||||||||||||| |||||||||| ||||| || |
Sbjct 684 CGGAGACGTGGGTAGAGGCGGCGTCGGAGACCGTGGACAGAGTCAGTCGGGACTATC-GT 742
Query 308 CTGGTCACGGTGGTCGTGGGACGCCGTCGCAACAACCTC-GACCACAAGCGGTTCCTCCG 366
| |||||| |||||||||||||| || ||||||||||| | ||||| |||||| ||| |
Sbjct 743 CGGGTCACTTTGGTCGTGGGACGCAGTTGCAACAACCTCAG-CCACAGGCGGTTTCTCAG 801
Query 367 TCGACGTCGCAGGCACGAGTGAGTCAAGCCTTTGCAACCGGAGGCGTGGGT 417
||| | ||||||| | |||||||||| |||||||||| ||||||||||||
Sbjct 802 TCGTCTTCGCAGGGTCAAGTGAGTCAATCCTTTGCAACAGGAGGCGTGGGT 852
Score = 145 bits (78), Expect = 3e-33
Identities = 86/90 (96%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGA 60
||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1 ATGGATCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGCAGAGGCGGCGGCGGA 60
Query 61 TATCGTGGTCGTGGTTACAGCGGTCGTGGT 90
|||||||||||||||||||||||||||||
Sbjct 61 GATCGTGGTCGTGGTTACAGCGGTCGTGGT 90
Score = 134 bits (72), Expect = 7e-30
Identities = 107/124 (86%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 149 GTCAGGTTCACGGTGGTCGTGGGACGCAATTGCAACAACCTCGGCCACAGGCGGTTTCTC 208
||| || |||| ||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 741 GTC-GGGTCACTTTGGTCGTGGGACGCAGTTGCAACAACCTCAGCCACAGGCGGTTTCTC 799
Query 209 AGTCGTCTTCGCAGGTTCAAGTGACTCAAGGCGTTGTAGCCGGAGGCGTGGGTAGAGGCG 268
||||||||||||||| |||||||| |||| | ||| | | |||||||||||| |||||
Sbjct 800 AGTCGTCTTCGCAGGGTCAAGTGAGTCAATCCTTTGCAACAGGAGGCGTGGGTTTAGGCG 859
Query 269 GCGT 272
|||
Sbjct 860 -CGT 862
Score = 106 bits (57), Expect = 2e-21
Identities = 73/80 (91%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70
||||||| | | | |||||||||||||||||||| |||||||||| |||| |||||||||
Sbjct 179 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCGTGGCAGAGGCGGCGGCGGAGATCGTGGTC 235
Query 71 GTGGTTACAGCGGTCGTGGT 90
||||||||||||||||||||
Sbjct 236 GTGGTTACAGCGGTCGTGGT 255
Score = 100 bits (54), Expect = 7e-20
Identities = 72/80 (90%), Gaps = 3/80 (4%)
Strand=Plus/Plus
Query 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70
||||||| | | | |||||||||||||||| ||| |||||||||| |||| |||||||||
Sbjct 122 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCATGGCAGAGGCGGCGGCGGAGATCGTGGTC 178
Query 71 GTGGTTACAGCGGTCGTGGT 90
||||||||||||||||||||
Sbjct 179 GTGGTTACAGCGGTCGTGGT 198
> AT1G31280.1 | Symbols: AGO2 | Argonaute family protein | chr1:11181711-11185344
FORWARD LENGTH=3343
Length=3343
Score = 2348 bits (1271), Expect = 0.0
Identities = 2210/2648 (83%), Gaps = 126/2648 (5%)
Strand=Plus/Plus
Query 746 CTTCTGATAAGAAAGAACCAATGAAGCGTCCTGATAGAGG-TG-GTAGTAAGCTTGTGCA 803
||||||||| |||||||||||||||||| ||||||||||| | || || || |||||
Sbjct 530 CTTCTGATAGGAAAGAACCAATGAAGCGACCTGATAGAGGCGGAGTTGT-GGC-TGTGCG 587
Query 804 ACGCGTAAATCTCTCTGTCAATCATT-TCAATGTGAGTTTCCCTTCTGAAAGTGAAAGTG 862
|| || ||||| | ||| ||||||| | || |||| |||| | |||||||| ||
Sbjct 588 GCGTGTTAATCTATATGTGAATCATTAT-AAAGTGAATTTCAATCCTGAAAGT----GT- 641
Query 863 TCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATCCTTTAAAAAAGATATCAAGAT 922
| ||||| || || |||||||| ||||||||||||| |||| || ||| | || || |
Sbjct 642 T-ATAAGACATTATGATGTTGAAATCAAAGGAGAAATTCCTACCAAGAAGGTTTCGAGGT 700
Query 923 ATGAGCTAGCTATGGTCAAAGAGAAGGTGTTCACCGACAATCCCGATAAGTTTCCCTTCG 982
||||||||||||||| | || ||||||||||| |||||||||||| |||||||||| |
Sbjct 701 TTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGACAATCCCGATGAGTTTCCCTTAG 760
Query 983 CTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGTCTACAGGTT 1042
||||||||||||||||||||||||||||||||||||| || | ||| || |||| || |
Sbjct 761 CTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGTGCGGTTGAGTTACCTACGGGGT 820
Query 1043 CATATAAGGTGGAGT-TCCCTGAAACTGATGAGATGAGAGCTCGAAGCTATACATTCACC 1101
|||| |||||||||| | ||| ||||||| |||||||||| |||||||||||| |||||
Sbjct 821 CATACAAGGTGGAGTAT-CCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACGTTCACT 879
Query 1102 ATCAAACAGGTGAATGATGAGCTTAAGCTACGTGACTTGGAAGACTACAT-A-AGGGGAA 1159
|||||||||||||||| | ||| |||||| |||||||| |||| ||||| | | ||| |
Sbjct 880 ATCAAACAGGTGAATG-T--GCTGAAGCTAGGTGACTTGAAAGAGTACATGACA-GGG-A 934
Query 1160 GTTCCTCTTTCATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAACATC 1219
| || ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 935 GATCGTCTTTCAATCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAGCATC 994
Query 1220 CTTCAAAGCGTATGATGACTGTTGGTAAAAGCTTTTTCACTC--G----TGAGCCAGATG 1273
|||| ||| ||||||| ||||||||||||||||||||||||| | |||||||||||
Sbjct 995 CTTCCAAGTGTATGATCACTGTTGGTAAAAGCTTTTTCACTCGTGAAACTGAGCCAGATG 1054
Query 1274 AAGACTTTCGCTTCGGGGTTGTAGCTGCGAAAGGGTATCGCCACACTCTAAAGCCCACAG 1333
|||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1055 AAGATTTTCGTTTCGGGGTTATAGCTGCGAAAGGGTATCGCCACACTCTGAAGCCCACAG 1114
Query 1334 CACAAGGTTTGTCTTTGTGTTTGGACTACTCGGTTTTGGCATTCCGCAATGCAATGTCGG 1393
||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||||||||
Sbjct 1115 CACAAGGTTTGTCTTTGTGTTTGGATTACTCGGTGTTGGCGTTCCGCAAAGCAATGTCGG 1174
Query 1394 TCATTGACTACCTGAAGTTGTACTTTGGCTGGTCCGATATGCGTCAGTTTAGGAATTGTA 1453
||||||| |||||||||||||||||| |||||| |||||||||||||||| | | |
Sbjct 1175 TCATTGAATACCTGAAGTTGTACTTTAACTGGTCTGATATGCGTCAGTTTA-G----G-A 1228
Query 1454 GGCGTGATGTGGAAAAGGAACTGACTGGTTTGAAAGTCACTGTTAACCATCGGAAGAACA 1513
|||||||||||||| ||||| ||| |||||||||||||||||| || |||||||||||||
Sbjct 1229 GGCGTGATGTGGAAGAGGAATTGATTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACA 1288
Query 1514 AGCAGAAACTCACCATTGTAGGGTTGAGTGA-GTACAACACAAAAGATATCACATTCGAT 1572
||||||||||||||||||||||| ||||| | | | ||||||||||| |||| ||| |||
Sbjct 1289 AGCAGAAACTCACCATTGTAGGGCTGAGT-ATGCAAAACACAAAAGACATCAAATTTGAT 1347
Query 1573 CTTATTGATCATGCGGGAGACGAGCCTCCAAGGAAAGTA--TCCATTGTTAAGTATTTCA 1630
||||||||||| | |||| ||||||| |||||| ||| | ||||||||| |||||||||
Sbjct 1348 CTTATTGATCAAGAGGGAAACGAGCCGCCAAGG-AAG-ACGTCCATTGTTGAGTATTTCA 1405
Query 1631 TGGA-AAAGTATGGAAAAGACATCCGTT-ACAAGGATATTCCTTGCCTAAG-TTTGGGGA 1687
||| ||||||||||| | |||| ||| |||||||||| ||||| || | ||| ||||
Sbjct 1406 -GGATAAAGTATGGAAGACACAT-TGTTCACAAGGATATACCTTG-CTTGGATTT-GGGA 1461
Query 1688 AAAAA-GGTCGGCAAAATTATGTACCCATGGAGTTTTGTAACTTGGTCGAGGGGCAGATT 1746
||||| ||| ||||||||| ||| |||||||| || ||| ||||||| ||||| |||||
Sbjct 1462 AAAAACGGTAGGCAAAATTTTGTGCCCATGGAATTCTGTGACTTGGTTGAGGGACAGATA 1521
Query 1747 TATCCAAAAGAAAAATT-GA-AGGGTAATTCAGCTTCCCGGTTAAAACACTTGTCCCTTG 1804
|||||||| || || || || | | ||||||||| || ||||| | ||||| || |
Sbjct 1522 TATCCAAAGGATAACTTGGATAAAG--ATTCAGCTTTGTGGCTAAAAAAGTTGTCACTGG 1579
Query 1805 TCAATCCACAACGAAGGAAGGA-GAATATAGAAAATATGATAAA-GCTTAGGGATGGACC 1862
|||||||||||| |||| | || ||||||||| || |||||||| || | | |||||||
Sbjct 1580 TCAATCCACAACAAAGGCA-GAGGAATATAGATAAGATGATAAAGGC-TCGTAATGGACC 1637
Query 1863 AAGCGGTGGAGATATCATTGGGAATTTTGGACTGAAAGTGGCTACAAACATGACAACGGT 1922
|||||||| || |||||||| || |||||| ||||||||| ||||||||||||| ||||
Sbjct 1638 GAGCGGTGGTGAAATCATTGGAAACTTTGGATTGAAAGTGGATACAAACATGACACCGGT 1697
Query 1923 GGAAGGTCGTGTACTCAAGGCTCCTA-CACTGATGTTGACTGATCAGAAAGGA-AATCCT 1980
|||||||||||||||||||||||| | || ||| |||| | || || | ||| | | |
Sbjct 1698 GGAAGGTCGTGTACTCAAGGCTCC-ATCATTGAAGTTGGCAGA-GAG-AGGGAGAGT--T 1752
Query 1981 GTCAC-TGAGGAA--C--CCCG-CA-AGAACAATCAATGGAACCTTA-CAATAAAGCGAG 2032
|| | ||||||| | |||| | ||||||| ||||||||||||| || ||| |||
Sbjct 1753 GT-GCGTGAGGAACCCAACCCGAGACAGAACAACCAATGGAACCTTATGAA-GAAGGGAG 1810
Query 2033 TTACAAAGGGTTCAAAAGTCAAGCATTGGGCTGTTCTTGATTTCACCGCGTCTAAGAAGC 2092
| |||| ||| || | |||||||||||||||||| ||||| ||||| || || | |
Sbjct 1811 TCACAAGGGGATCTATAGTCAAGCATTGGGCTGTACTTGACTTCACTGCATC--CG-A-- 1865
Query 2093 CGCACAATT-ACAAGATGCCTGATAACTTTGTTGAGGAA-CTCACTGCGCGTTGTTCCAG 2150
| | | || ||||||||||| || ||||||| || || || | || ||||||| ||
Sbjct 1866 -G-AGATTTAACAAGATGCCTAATGACTTTGTGGA-TAACCTTATTGATCGTTGTTGGAG 1922
Query 2151 ACTTGGGATGAC-GTTGGAGAATCCTATCGTTCGCAAAACATTAAGTATGGATACGCTTT 2209
|||||||||| | | ||||| |||||||||| |||||||| || ||||| || ||||
Sbjct 1923 ACTTGGGATG-CAGATGGAGGCTCCTATCGTTTACAAAACATCGAGAATGGAAACACTTT 1981
Query 2210 CTAATGGTAATGATCTTGAGGAATTGCTTCGATCCGTGATTGATGAGGCTT-TACTTAA- 2267
|||||||||||| | ||||||||||||||||||||||||| ||||| |||| | | |||
Sbjct 1982 CTAATGGTAATGCTATTGAGGAATTGCTTCGATCCGTGATAGATGAAGCTTCT-CGTAAG 2040
Query 2268 C-T-ATCGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTGGGAAAGTCGATGGCTAC 2325
| | | ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 2041 CATGGTGGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTCGGAAAGACGATGGCTAT 2100
Query 2326 AAGACTCTGAAATGGCTAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACC 2385
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 AAGACTCTGAAATGGATAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACT 2160
Query 2386 GGTTCTGCGAATAGGGGAGGTGATCAGTACTTGGCAAATCTCGCCCTCAAGATAAACGCA 2445
||| |||| | || ||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 2161 GGTCCTGCCACTAAAGGAGGTGATCAGTACCGGGCAAATCTTGCCCTCAAGATGAACGCA 2220
Query 2446 AAGGTTGGTGGAACG-AACGTGGAGCTGGTGGACAATTA-TTTCTCTTTCTTCAATGAAG 2503
||||||||||||| | || || ||||| ||| | || ||||||||||||||| |||
Sbjct 2221 AAGGTTGGTGGAA-GCAATGTCGAGCTTATGG---A-TACTTTCTCTTTCTTCAAAAAAG 2275
Query 2504 AAGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCACGACAAGATGA 2563
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2276 AGGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCGGGACAAGATGA 2335
Query 2564 GTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAGCTAACCGCTACGCAG 2623
| || ||||||||||||||||| || |||||||||||||||||||| || ||||| ||||
Sbjct 2336 GCCCGTCCATTGTTGCTGTTGTGGGAACTCTTAACTGGCCTGAAGCAAATCGCTATGCAG 2395
Query 2624 CTAGAGTCAAAGCTCAGACTCACCGTAAAGAAGAGATACAAGGGTTTGGTGAAACTTGCT 2683
||||||||| || ||| ||||||| ||||| || |||||||| ||||| || |||| |
Sbjct 2396 CTAGAGTCATTGCCCAGCCTCACCGCAAAGAGGAAATACAAGGATTTGGCGACGCTTGTT 2455
Query 2684 TAGAGCTTGTCAATGCTCAT-TCTAATGCCACCAAG-AAACGACCTAACAAGATTGTGAT 2741
| ||||||||||| |||||| | | | ||||| | | ||||| |||||||||||||||||
Sbjct 2456 TGGAGCTTGTCAAAGCTCATGT-TCAGGCCAC-AGGGAAACGGCCTAACAAGATTGTGAT 2513
Query 2742 ATTCCGTGATGGTGTCAGTGATGGTCAGTTCGATATGGTTCTCAATGTGGAGTTACA-GA 2800
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||
Sbjct 2514 ATTCCGTGATGGTGTCAGCGATGCTCAGTTCGATATGGTTCTCAATGTGGAGTTGCTTGA 2573
Query 2801 ATGTTAAGG-ACACTTTTAAAAAGATTGAATATAATCCGTTGATAACGGTAATTGTGGCA 2859
||||||| | |||||| | |||| || || ||||| |||||||||||| || ||
Sbjct 2574 -TGTTAAGCTA-ACTTTTGAGAAGAATGGTTACAATCCAAAGATAACGGTAATCGTAGCC 2631
Query 2860 CAGAAGCGTCATCAAACCCGTTTCTTCCCTGCCACAAGCAATGAT--AAG-GA------C 2910
||||| ||||||||||||||||||||||| ||||||| |||||| ||| || |
Sbjct 2632 CAGAAACGTCATCAAACCCGTTTCTTCCCAGCCACAAATAATGATGGAAGTGATAAGGGC 2691
Query 2911 AATGTGCTTTCAGGTACGGTCGTTGATAC-AAAGATCATTCACCCATTTGAGTATGATTT 2969
||||||| |||||||||||| |||||||| |||| | |||||||| | ||||||||||||
Sbjct 2692 AATGTGCCTTCAGGTACGGTTGTTGATACTAAAGTT-ATTCACCCGTATGAGTATGATTT 2750
Query 2970 CTATCTCTGCAGTCACCACGGAGGGATTGGGACAAGCAAACCAACTCATTACTATGTTCT 3029
||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 2751 CTACCTCTGCAGTCACCACGGAGGGATAGGGACAAGCAAACCGACTCATTACTACACTCT 2810
Query 3030 GTACGACGAAATCGGGTTCAAGTCGGATCAGATTCAGAAGCTCATATTTGACG-TGTGCT 3088
| |||||| | || |||| ||||||||| | ||||||||||| || || | ||||||
Sbjct 2811 TTGGGACGAACTTGGATTCACTTCGGATCAGGTGCAGAAGCTCATCTTCGA-GATGTGCT 2869
Query 3089 TCACGTTT-ACTCGCTGCACCAAACCTGTCGCTCTGGTTCCTCCAGTTTCTTATGCTGAC 3147
|||| ||| ||||||||||||||||| ||| |||| ||||| || || | ||||||||||
Sbjct 2870 TCAC-TTTCACTCGCTGCACCAAACCCGTCTCTCTTGTTCCGCCGGTGTATTATGCTGAC 2928
Query 3148 AAGGCTGCTTCTAGAGGAAGGTTGTACTACGAGGCAAGCTTTA-TGGAGAAGAACTCTAA 3206
| || ||||| |||||||||| ||||| |||||||||||| | || ||||||||| |||
Sbjct 2929 ATGGTTGCTTTTAGAGGAAGGATGTACCACGAGGCAAGCTCTCGTG-AGAAGAACTTTAA 2987
Query 3207 GCAGTCGCGTGGAGCGTCTTCATCTTCTGCTGCTTCGGTTGCCTCTTCATCCTCTTCTCT 3266
|||| |||| |||||||| | || ||||||||||| |||||||||||| ||||||||
Sbjct 2988 GCAGCCGCGGGGAGCGTCAAC--CT-CTGCTGCTTCGCTTGCCTCTTCATTATCTTCTCT 3044
Query 3267 CACAGTGGAGGACAAAGAGATCTTCAAAGTT-CACACAGAGATTGAGAACAATATGTTCT 3325
||| | |||||||||| ||| ||||| | | || ||||| ||||||| ||||||||
Sbjct 3045 TACAATTGAGGACAAAGCGATTTTCAA-GCTGCATGCAGAGCTTGAGAATGTTATGTTCT 3103
Query 3326 TCGTCTGA 3333
||||||||
Sbjct 3104 TCGTCTGA 3111
Score = 84.2 bits (45), Expect = 7e-15
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGC 54
|||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 67 ATGGAGAGAGGTGGTTATCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGTGGC 120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 165851913558
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5