BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913356 Length=3333 Score E Sequences producing significant alignments: (Bits) Value AT1G31290.1 | Symbols: AGO3 | ARGONAUTE 3 | chr1:11188293-11192... 2819 0.0 AT1G31280.1 | Symbols: AGO2 | Argonaute family protein | chr1:1... 2348 0.0 > AT1G31290.1 | Symbols: AGO3 | ARGONAUTE 3 | chr1:11188293-11192317 FORWARD LENGTH=3585 Length=3585 Score = 2819 bits (1526), Expect = 0.0 Identities = 2382/2780 (86%), Gaps = 119/2780 (4%) Strand=Plus/Plus Query 624 AGGCGCGTGGGCTCGTAGGCCACAACTTTTCTCTGATTCGGCGGTCTTGCCTTC---TTC 680 ||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||| ||| Sbjct 855 AGGCGCGTGGGCTCGTAAGCCTCAACTTTTCTCTGATTCGACGGTCTTACCTTCTAGTTC 914 Query 681 TTCGTCGACCGTCGTGGCTTCTCAAACCGCTAGTGGTTCTCAAGTTATGACTCCGAAGCC 740 |||||| | |||||| |||||||| |||||||||||||||||||||||||||||||| || Sbjct 915 TTCGTCTAACGTCGTTGCTTCTCACACCGCTAGTGGTTCTCAAGTTATGACTCCGAAACC 974 Query 741 ATCTTCTTCTGATAAGAAAGAACCAATGAAGCGTCCTGATAGAGGTGGTAGTA-AGCTTG 799 ||||||||||||||||||||||||| | ||||||||||||| |||||||| || | | Sbjct 975 ATCTTCTTCTGATAAGAAAGAACCAGTAAAGCGTCCTGATAAAGGTGGTAATATA-AAAG 1033 Query 800 TGCAACGCGT-A--AATCTCTCTGTCAATCATTTCA-ATGTGAGTTTCCCTTCTGAAAGT 855 || || |||| | |||||||| ||||||||||| | | |||||||| | || || Sbjct 1034 TGAAAGGCGTAATTAATCTCTCCGTCAATCATTTTAGA-GTGAGTTT--C-TC---AACA 1086 Query 856 GAAAGTGTCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATCCTTTAAAAAAGATA 915 ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 1087 GAAAGTGTCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATTCTTCAAAAAAGATA 1146 Query 916 TCAAGATATGAGCTAGCTATGGTCAAAGAGAAGGTGTTCACCGACAATCCCGATAAGTTT 975 ||||||| ||||||||||||||||||||| ||| |||||| |||||| || | ||| Sbjct 1147 TCAAGATTTGAGCTAGCTATGGTCAAAGAAAAGCTGTTCAAGGACAAT---AATGACTTT 1203 Query 976 CCCT-TCGCTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGTC 1034 ||| ||| |||||||| || |||||||||||||||||||||||||| | |||||| | Sbjct 1204 -CCTAACGCCATGACAGCGTACGATGGTCAGAAGAACATTTTCAGCGCTGTTGAATTACC 1262 Query 1035 TACAGGTTCATATAAGGTGGAGTTCCCTGAAACTGATGAG---ATGAGAGCTCGAAGCTA 1091 ||| || |||| ||| || || ||| | ||||| || ||| ||||||| | ||||||| Sbjct 1263 TACGGGATCATTTAAAGTTGATTTCTCAGAAACCGAGGAGATCATGAGAGGTAGAAGCTA 1322 Query 1092 TACATTCACCATCAAACAGGTGAATGATGAGCTTAAGCTACGTGACTTGGAAGACTACAT 1151 ||| |||| ||||||||| ||||| | ||||| ||| ||| ||||||| ||| |||||| Sbjct 1323 TACGTTCATCATCAAACAAGTGAA--A-GAGCTAAAGTTACTTGACTTGCAAGCCTACAT 1379 Query 1152 AAG-GGGAAGTTCCTCTTTCATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGA 1210 || ||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1380 -AGATGGACGTTCCACTTTTATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGA 1438 Query 1211 AGGAACATCCTTCAAAGCGTATGATGACTGTTGGTAAAAGCTT-TTTC--ACTCGTGAGC 1267 |||||||||||||||| |||||||| |||||||||||||| || ||| ||||| | | Sbjct 1439 AGGAACATCCTTCAAAACGTATGATCACTGTTGGTAAAAGATTCTTTAGTACTCG-G--C 1495 Query 1268 CAGATGAA-GACTTTCGCTTCGGGGTTGTAGCTGCGAAAGGGTATCGCCACACTCTAAAG 1326 ||| || |||||| | | ||| |||| |||||||||||||| || ||||||||| ||| Sbjct 1496 TAGA-GATTGACTTTGGATACGGAGTTGGAGCTGCGAAAGGGTTTCACCACACTCTCAAG 1554 Query 1327 CCCACAGCACAAGGTTTGTCTTTGTGTTTGGACTACTCGGTT-TTGGCATTCCGCAATGC 1385 ||||||| ||||||||| || || |||||| ||| ||| || ||||| |||||||| || Sbjct 1555 CCCACAGTACAAGGTTTATCATTATGTTTGAACTCCTCT-TTGTTGGCGTTCCGCAAAGC 1613 Query 1386 AATGTCGGTCATTGACTACCTGAAGTTGTACTTTGGCTGGTCCGATATGCGTCAGTTTAG 1445 ||| || ||||| || |||||||||||||||||||| ||| |||| |||||||||| Sbjct 1614 AATTTCAGTCATCGAATACCTGAAGTTGTACTTTGGGTGGAGAAATATACGTCAGTTTAA 1673 Query 1446 GAATTGTAGGCGTGATG---TGGAA-AAGGAACTGACTGGTTTGAAAGTCACTGTTAACC 1501 ||||||||||| ||||| ||| | ||| || ||| ||||||||||||||||||| | | Sbjct 1674 GAATTGTAGGCCTGATGACGTGGTACAAG-AATTGATTGGTTTGAAAGTCACTGTTGATC 1732 Query 1502 ATCGGAAGAACAAGCAGAAACTCACCATTGTAGGGTTGAGTGAGTACAACACAAAAGATA 1561 |||| |||| ||| |||||| ||| |||| | ||||||||| || || |||||||||||| Sbjct 1733 ATCGAAAGACCAAACAGAAATTCATCATTATGGGGTTGAGTAAGGACGACACAAAAGATA 1792 Query 1562 TCACATTCGATCTTATTGATCATGCGGGAGACGAGCCTCCAAGGAAAGTATCCATTGTTA 1621 ||| ||||||| ||||||||||||| ||| || |||||||||||||| ||||||||||| Sbjct 1793 TCAAATTCGATTTTATTGATCATGCTGGAAACCAGCCTCCAAGGAAAATATCCATTGTTG 1852 Query 1622 AGTATTTCATGGAAAAGTATGGAAAAGACATCCGTT-ACAAGGATATTCCTTGCCT-AAG 1679 ||||||||| |||||||||||||| |||||| | | ||||||||||||||||| | || Sbjct 1853 AGTATTTCAAGGAAAAGTATGGAAGAGACATT-GATCACAAGGATATTCCTTGCTTGAA- 1910 Query 1680 TTTGGGGAAAAAAGGTCGGCAAAATTATGTACCCATGGAGTTTTGTAACTTGGTCGAGGG 1739 |||||||||||| |||||| |||||| ||||||||||||||| |||||||| |||||||| Sbjct 1911 TTTGGGGAAAAAGGGTCGGGAAAATTTTGTACCCATGGAGTTCTGTAACTTAGTCGAGGG 1970 Query 1740 GCAGATTTATCCAAAAGAAAAATTG-A-AGGGTAATTCAGCTTCCCGGTTAAAACA-CTT 1796 |||||||| ||||||||| |||||| | || | | |||||| | ||||||| | ||| Sbjct 1971 GCAGATTTTTCCAAAAGAGAAATTGTATAGAG-A-TTCAGCCGCGTGGTTAAAGGAGCTT 2028 Query 1797 GTCCCTTGTCAATCCACAACGAAGGAA-GGAGAATATAGAA-AATATGATAAAG-CTTAG 1853 || || |||| |||||||| ||| | |||||||||| || || ||||||||| || || Sbjct 2029 -TCACTAGTCACTCCACAACAAAG-ACTGGAGAATATA-AATAAGATGATAAAGTCT-AG 2084 Query 1854 GGATGGACCAAGCGGTGGAGATATCATTGGGAATTTTGGACTGAAAGTGGCTACAAACAT 1913 |||||||| || ||||||||||||||||| || || ||| ||| ||||| | ||||||| Sbjct 2085 TGATGGACCTAGAGGTGGAGATATCATTGGAAACTTCGGATTGAGAGTGGATCCAAACAT 2144 Query 1914 GACAACGGTGGAAGGTCGTGTACTCAAGGCTCCTACACTGATGTTGACTGATCAGAAAGG 1973 ||||||||||||||||||||||||| ||||||||||||||| |||||||||| || ||| Sbjct 2145 GACAACGGTGGAAGGTCGTGTACTCGAGGCTCCTACACTGAAATTGACTGATCGGAGAGG 2204 Query 1974 AAATCCTGTC-ACTGAGGAACCCC-G--CAAGAACAATCAATGGAACCTTACAATAAAGC 2029 |||||| || | |||| ||| | | | ||| |||||||||||||||||| | |||| Sbjct 2205 CAATCCTATCCA-TGAGAAACTCATGAGCGAGAGCAATCAATGGAACCTTACGACAAAGG 2263 Query 2030 GAGTTACAAAGGGTTCAA-AAGTCAAGCATTGGGCTGTTCTTGATTTCACCGCGTCTAAG 2088 |||| ||||||||||||| || |||||||||||||||||||||| ||||| || || || Sbjct 2264 GAGTCACAAAGGGTTCAATAA-TCAAGCATTGGGCTGTTCTTGACTTCACTGCATCCGAG 2322 Query 2089 AAGCC-GCACAATTACAAGATGCCTGATAACTTTGTTGAGGAACTCACTGCG--CGTTGT 2145 | | | | || | |||||||||| | ||||||| | |||||| | || |||||| Sbjct 2323 A-GTTTGAAAAA--A-AAGATGCCTGGTTACTTTGTAAATAAACTCA-T-CGAACGTTGT 2376 Query 2146 TCCAGACTTGGGATG-ACGTTGGAGAATCCTATCGTTCGCAAAACATTAAGTATGGATAC 2204 ||||||||||| | | ||||| |||||||||| ||||||||| |||||||| || Sbjct 2377 AAGGGACTTGGGATGCA-GATGGAGGCTCCTATCGTTTGCAAAACATCGAGTATGGAAAC 2435 Query 2205 GCTTTCTAATGGTAATGATCTTGAGGAATTGCTTCGATCCGTGATTGATGAGGCTT-TAC 2263 |||| | ||||||||| ||||||||||||||||||||||||||| |||||||||| | | Sbjct 2436 ACTTTATGATGGTAATGCTCTTGAGGAATTGCTTCGATCCGTGATAGATGAGGCTTCT-C 2494 Query 2264 TTAACTATCG-GG--CTCGTCCAACTCTTGTTCTGTGTGCTATGTCTGGGAAAGT-CGAT 2319 |||| || | || || |||||||||||||||||||||||||| ||||||| | |||| Sbjct 2495 ATAACCATGGTGGGGCTTGTCCAACTCTTGTTCTGTGTGCTATGACTGGGAA-GCACGAT 2553 Query 2320 GGCTACAAGACTCTGAAATGGCTAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTC 2379 || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 2554 GGATACAAGACTCTGAAATGGATAGCCGAGACCAAACTTGGTCTAGTGACTCAGTGTTTC 2613 Query 2380 TTGACCGGT-TCTGCGAATAGGGGAG-----GT----GATCAGTACTTGGCAAATCTCGC 2429 |||||| | ||||| | || |||| || ||||||||||||||||||||||| Sbjct 2614 TTGACCA-TATCTGCCATTAAAGGAGAAACCGTTTCTGATCAGTACTTGGCAAATCTCGC 2672 Query 2430 CCTCAAGATAAACGCAAAGGTTGGTGGAACGAACGTGGAGCTGGTGGACAATTATTT-CT 2488 |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| || Sbjct 2673 CCTCAAGATAAACGCAAAGGTTGGTGGAACGAACGTGGAGTTGGTGGATAAT-ATTTTCT 2731 Query 2489 CTTTCTTCAATGAAGAAGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTG 2548 |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2732 CTTTCTTCAAAAAAGAAGATAAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTG 2791 Query 2549 CTCACGACAAGATGAGTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAG 2608 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2792 CTCACGACAATATGAGTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAG 2851 Query 2609 CTAACCGCTACGCAGCTAGAGTCAAAGCTCAGACTCACCGTAAAGAAGAGATACAAGGGT 2668 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2852 CTAACCGCTACGCAGCTAGAGTCAAAGCTCAGAGTCACCGTAAAGAAGAGATACAAGGGT 2911 Query 2669 TTGGTGAAACTTGCTTAGAGCTTGTC-AATGCTCATTCTAATGCCACCAAGAAACGACCT 2727 ||||||||||||||| |||||| || || ||||||||| | ||| || ||||||||||| Sbjct 2912 TTGGTGAAACTTGCTGGGAGCTTATCGAA-GCTCATTCTCAGGCCCCCGAGAAACGACCT 2970 Query 2728 AACAAGATTGTGATATTCCGTGATGGTGTCAGTGATGGTCAGTTCGATATGGTTCTCAAT 2787 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2971 AACAAGATTGTGATATTCCGTGATGGTGTCAGCGATGGTCAGTTCGATATGGTTCTCAAT 3030 Query 2788 GTGGAGTTACAGAATGTTAAGGACACTTTTAAAAAGATTGAATATAATCCGTTGATAACG 2847 |||||||||||||||||||||||| |||| ||| ||| ||||||||| |||||| Sbjct 3031 GTGGAGTTACAGAATGTTAAGGACGTTTTTGCCAAGGTTGGCTATAATCCGCAGATAACT 3090 Query 2848 GTAATTGTGGCACAGAAGCGTCATCAAACCCGTTTCTTCCCTGCCACAA---GCAATGAT 2904 ||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||| Sbjct 3091 GTAATTGTGGCACAGAAACGTCATCAAACCCGTTTCTTCCCCGCCACAACTAGCAAAGAT 3150 Query 2905 --AAGG---A----CAATGTGCTTTCAGGTACGGTCGTTGATACAAAGATCATTCACCCA 2955 |||| | |||||||| ||||||||||||||||||||| | |||||||||||| Sbjct 3151 GGAAGGGCTAAGGGCAATGTGCCTTCAGGTACGGTCGTTGATACCACGATCATTCACCCG 3210 Query 2956 TTTGAGTATGATTTCTATCTCTGCAGTCACCACGGAGGGATTGGGACAAGCAAACCAACT 3015 ||||||||||||||||| ||||| ||||| || |||| ||| || ||||||||||||||| Sbjct 3211 TTTGAGTATGATTTCTACCTCTGTAGTCAACATGGAGCGATAGGTACAAGCAAACCAACT 3270 Query 3016 CATTACTATGTTCTGTACG-ACGAAATCGGGTTCAAGTCGGATCAGATTCAGAAGCTCAT 3074 ||||| |||||||| | || |||||||||||||||| ||| ||||||||||||| ||||| Sbjct 3271 CATTATTATGTTCTTT-CGGACGAAATCGGGTTCAACTCGAATCAGATTCAGAAACTCAT 3329 Query 3075 ATTTGACGTGTGCTTCACGTTTACTCGCTGCACCAAACCTGTCGCTCTGGTTCCTCCAGT 3134 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 3330 CTTTGACTTGTGCTTCACGTTTACTCGCTGCACCAAACCGGTCGCTCTGGTTCCTCCGGT 3389 Query 3135 TTCTTATGCTGACAAGGCTGCTTCTAGAGGAAGGTTGTACTACGAGGCAAGCTTTATGGA 3194 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | Sbjct 3390 TTCTTATGCTGACAAGGCTGCTTCTAGAGGAAGGGTGTACTACGAGGCAAGCTTAATGAA 3449 Query 3195 GAAGAACTCTAAGCAGTCGCGTGGAGCGTCTTCATCTTCTGCTGCTTCGGTTGCCTCTTC 3254 |||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||| Sbjct 3450 GAAGAATTCTAAGCAGTCGCGTGGAGCGTCTTCGTCTTCTGC--CT-CGGTTGCCTCTTC 3506 Query 3255 ATCCTCTTCTCTCACAGTGGAGGACAAAGAGATCTTCAAAGTTCACACAGAG-ATTGAGA 3313 |||||||||| ||||| |||||||||||||||||||||| |||||| ||| | || |||| Sbjct 3507 ATCCTCTTCTGTCACAATGGAGGACAAAGAGATCTTCAAGGTTCACGCAG-GCATCGAGA 3565 Query 3314 ACAATATGTTCTTCGTCTGA 3333 || ||||||||| |||||| Sbjct 3566 ACTTTATGTTCTTTGTCTGA 3585 Score = 294 bits (159), Expect = 3e-78 Identities = 239/276 (87%), Gaps = 11/276 (4%) Strand=Plus/Plus Query 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70 ||||||| | | | |||||||||||||||| ||| |||||||||| |||| ||||||||| Sbjct 236 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCATGGCAGAGGCGGCGGCGGAGATCGTGGTC 292 Query 71 GTGGTTACAGCGGTCGTGGTCGTGGCTTCGATCAAGACAGAGATGGTGGTTTGGTAAATC 130 |||||||||||||||||||||||||||| | |||||| || |||||||||| |||||||| Sbjct 293 GTGGTTACAGCGGTCGTGGTCGTGGCTTTGTTCAAGATAGGGATGGTGGTTGGGTAAATC 352 Query 131 GAGGGCAGAGTTCCGGTGGTCAGGTTCACGGTGGTCGTGGGACGCAATTGCAACAACCTC 190 |||||| ||||| |||||||| |||| | ||||||||||||||| ||||||||||||| Sbjct 353 CAGGGCAAAGTTCAGGTGGTCATGTTC--G-TGGTCGTGGGACGCAGTTGCAACAACCTC 409 Query 191 GGCCACAGGCGGTTTCTCAGTCGTCTTCGCAGGTTCAAGTGACTCAAGGCGTTGTAGCC- 249 |||||||| ||| ||| |||||| ||||| | |||||||| ||||||||||| | || Sbjct 410 CGCCACAGGAAGTTCCTCCGTCGTCGTCGCAAGCTCAAGTGAGTCAAGGCGTTGCA-CCA 468 Query 250 GGAGGCGTGGGT-AGAGGCGGCGTCGGAGACCGTGG 284 |||| ||||||| | |||||||||||||||| |||| Sbjct 469 GGAGACGTGGGTCA-AGGCGGCGTCGGAGAC-GTGG 502 Score = 180 bits (97), Expect = 9e-44 Identities = 147/171 (86%), Gaps = 4/171 (2%) Strand=Plus/Plus Query 249 CGGAGGCGTGGGTAGAGGCGGCGTCGGAGACCGTGGTCAGAGTCAGTGGGGACC-TCCGC 307 ||||| |||||||||||||||||||||||||||||| |||||||||| ||||| || | Sbjct 684 CGGAGACGTGGGTAGAGGCGGCGTCGGAGACCGTGGACAGAGTCAGTCGGGACTATC-GT 742 Query 308 CTGGTCACGGTGGTCGTGGGACGCCGTCGCAACAACCTC-GACCACAAGCGGTTCCTCCG 366 | |||||| |||||||||||||| || ||||||||||| | ||||| |||||| ||| | Sbjct 743 CGGGTCACTTTGGTCGTGGGACGCAGTTGCAACAACCTCAG-CCACAGGCGGTTTCTCAG 801 Query 367 TCGACGTCGCAGGCACGAGTGAGTCAAGCCTTTGCAACCGGAGGCGTGGGT 417 ||| | ||||||| | |||||||||| |||||||||| |||||||||||| Sbjct 802 TCGTCTTCGCAGGGTCAAGTGAGTCAATCCTTTGCAACAGGAGGCGTGGGT 852 Score = 145 bits (78), Expect = 3e-33 Identities = 86/90 (96%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 1 ATGGAGCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGA 60 ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1 ATGGATCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGCAGAGGCGGCGGCGGA 60 Query 61 TATCGTGGTCGTGGTTACAGCGGTCGTGGT 90 ||||||||||||||||||||||||||||| Sbjct 61 GATCGTGGTCGTGGTTACAGCGGTCGTGGT 90 Score = 134 bits (72), Expect = 7e-30 Identities = 107/124 (86%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 149 GTCAGGTTCACGGTGGTCGTGGGACGCAATTGCAACAACCTCGGCCACAGGCGGTTTCTC 208 ||| || |||| ||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 741 GTC-GGGTCACTTTGGTCGTGGGACGCAGTTGCAACAACCTCAGCCACAGGCGGTTTCTC 799 Query 209 AGTCGTCTTCGCAGGTTCAAGTGACTCAAGGCGTTGTAGCCGGAGGCGTGGGTAGAGGCG 268 ||||||||||||||| |||||||| |||| | ||| | | |||||||||||| ||||| Sbjct 800 AGTCGTCTTCGCAGGGTCAAGTGAGTCAATCCTTTGCAACAGGAGGCGTGGGTTTAGGCG 859 Query 269 GCGT 272 ||| Sbjct 860 -CGT 862 Score = 106 bits (57), Expect = 2e-21 Identities = 73/80 (91%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70 ||||||| | | | |||||||||||||||||||| |||||||||| |||| ||||||||| Sbjct 179 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCGTGGCAGAGGCGGCGGCGGAGATCGTGGTC 235 Query 71 GTGGTTACAGCGGTCGTGGT 90 |||||||||||||||||||| Sbjct 236 GTGGTTACAGCGGTCGTGGT 255 Score = 100 bits (54), Expect = 7e-20 Identities = 72/80 (90%), Gaps = 3/80 (4%) Strand=Plus/Plus Query 11 GTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGCGTCGGATATCGTGGTC 70 ||||||| | | | |||||||||||||||| ||| |||||||||| |||| ||||||||| Sbjct 122 GTGGTTA-C-A-GCGGTCGTGGTGATGGCCATGGCAGAGGCGGCGGCGGAGATCGTGGTC 178 Query 71 GTGGTTACAGCGGTCGTGGT 90 |||||||||||||||||||| Sbjct 179 GTGGTTACAGCGGTCGTGGT 198 > AT1G31280.1 | Symbols: AGO2 | Argonaute family protein | chr1:11181711-11185344 FORWARD LENGTH=3343 Length=3343 Score = 2348 bits (1271), Expect = 0.0 Identities = 2210/2648 (83%), Gaps = 126/2648 (5%) Strand=Plus/Plus Query 746 CTTCTGATAAGAAAGAACCAATGAAGCGTCCTGATAGAGG-TG-GTAGTAAGCTTGTGCA 803 ||||||||| |||||||||||||||||| ||||||||||| | || || || ||||| Sbjct 530 CTTCTGATAGGAAAGAACCAATGAAGCGACCTGATAGAGGCGGAGTTGT-GGC-TGTGCG 587 Query 804 ACGCGTAAATCTCTCTGTCAATCATT-TCAATGTGAGTTTCCCTTCTGAAAGTGAAAGTG 862 || || ||||| | ||| ||||||| | || |||| |||| | |||||||| || Sbjct 588 GCGTGTTAATCTATATGTGAATCATTAT-AAAGTGAATTTCAATCCTGAAAGT----GT- 641 Query 863 TCATAAGGCACTACGATGTTGATATCAAAGGAGAAAATCCTTTAAAAAAGATATCAAGAT 922 | ||||| || || |||||||| ||||||||||||| |||| || ||| | || || | Sbjct 642 T-ATAAGACATTATGATGTTGAAATCAAAGGAGAAATTCCTACCAAGAAGGTTTCGAGGT 700 Query 923 ATGAGCTAGCTATGGTCAAAGAGAAGGTGTTCACCGACAATCCCGATAAGTTTCCCTTCG 982 ||||||||||||||| | || ||||||||||| |||||||||||| |||||||||| | Sbjct 701 TTGAGCTAGCTATGGTTAGGGACAAGGTGTTCACTGACAATCCCGATGAGTTTCCCTTAG 760 Query 983 CTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGCGCAGCTGAATTGTCTACAGGTT 1042 ||||||||||||||||||||||||||||||||||||| || | ||| || |||| || | Sbjct 761 CTATGACAGCTTATGATGGTCAGAAGAACATTTTCAGTGCGGTTGAGTTACCTACGGGGT 820 Query 1043 CATATAAGGTGGAGT-TCCCTGAAACTGATGAGATGAGAGCTCGAAGCTATACATTCACC 1101 |||| |||||||||| | ||| ||||||| |||||||||| |||||||||||| ||||| Sbjct 821 CATACAAGGTGGAGTAT-CCTAAAACTGAAGAGATGAGAGGTCGAAGCTATACGTTCACT 879 Query 1102 ATCAAACAGGTGAATGATGAGCTTAAGCTACGTGACTTGGAAGACTACAT-A-AGGGGAA 1159 |||||||||||||||| | ||| |||||| |||||||| |||| ||||| | | ||| | Sbjct 880 ATCAAACAGGTGAATG-T--GCTGAAGCTAGGTGACTTGAAAGAGTACATGACA-GGG-A 934 Query 1160 GTTCCTCTTTCATTCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAACATC 1219 | || ||||||| |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 935 GATCGTCTTTCAATCCGCGTGATGTGTTGCAAGGAATGGATGTTGTGATGAAGGAGCATC 994 Query 1220 CTTCAAAGCGTATGATGACTGTTGGTAAAAGCTTTTTCACTC--G----TGAGCCAGATG 1273 |||| ||| ||||||| ||||||||||||||||||||||||| | ||||||||||| Sbjct 995 CTTCCAAGTGTATGATCACTGTTGGTAAAAGCTTTTTCACTCGTGAAACTGAGCCAGATG 1054 Query 1274 AAGACTTTCGCTTCGGGGTTGTAGCTGCGAAAGGGTATCGCCACACTCTAAAGCCCACAG 1333 |||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1055 AAGATTTTCGTTTCGGGGTTATAGCTGCGAAAGGGTATCGCCACACTCTGAAGCCCACAG 1114 Query 1334 CACAAGGTTTGTCTTTGTGTTTGGACTACTCGGTTTTGGCATTCCGCAATGCAATGTCGG 1393 ||||||||||||||||||||||||| |||||||| ||||| |||||||| |||||||||| Sbjct 1115 CACAAGGTTTGTCTTTGTGTTTGGATTACTCGGTGTTGGCGTTCCGCAAAGCAATGTCGG 1174 Query 1394 TCATTGACTACCTGAAGTTGTACTTTGGCTGGTCCGATATGCGTCAGTTTAGGAATTGTA 1453 ||||||| |||||||||||||||||| |||||| |||||||||||||||| | | | Sbjct 1175 TCATTGAATACCTGAAGTTGTACTTTAACTGGTCTGATATGCGTCAGTTTA-G----G-A 1228 Query 1454 GGCGTGATGTGGAAAAGGAACTGACTGGTTTGAAAGTCACTGTTAACCATCGGAAGAACA 1513 |||||||||||||| ||||| ||| |||||||||||||||||| || ||||||||||||| Sbjct 1229 GGCGTGATGTGGAAGAGGAATTGATTGGTTTGAAAGTCACTGTCAATCATCGGAAGAACA 1288 Query 1514 AGCAGAAACTCACCATTGTAGGGTTGAGTGA-GTACAACACAAAAGATATCACATTCGAT 1572 ||||||||||||||||||||||| ||||| | | | ||||||||||| |||| ||| ||| Sbjct 1289 AGCAGAAACTCACCATTGTAGGGCTGAGT-ATGCAAAACACAAAAGACATCAAATTTGAT 1347 Query 1573 CTTATTGATCATGCGGGAGACGAGCCTCCAAGGAAAGTA--TCCATTGTTAAGTATTTCA 1630 ||||||||||| | |||| ||||||| |||||| ||| | ||||||||| ||||||||| Sbjct 1348 CTTATTGATCAAGAGGGAAACGAGCCGCCAAGG-AAG-ACGTCCATTGTTGAGTATTTCA 1405 Query 1631 TGGA-AAAGTATGGAAAAGACATCCGTT-ACAAGGATATTCCTTGCCTAAG-TTTGGGGA 1687 ||| ||||||||||| | |||| ||| |||||||||| ||||| || | ||| |||| Sbjct 1406 -GGATAAAGTATGGAAGACACAT-TGTTCACAAGGATATACCTTG-CTTGGATTT-GGGA 1461 Query 1688 AAAAA-GGTCGGCAAAATTATGTACCCATGGAGTTTTGTAACTTGGTCGAGGGGCAGATT 1746 ||||| ||| ||||||||| ||| |||||||| || ||| ||||||| ||||| ||||| Sbjct 1462 AAAAACGGTAGGCAAAATTTTGTGCCCATGGAATTCTGTGACTTGGTTGAGGGACAGATA 1521 Query 1747 TATCCAAAAGAAAAATT-GA-AGGGTAATTCAGCTTCCCGGTTAAAACACTTGTCCCTTG 1804 |||||||| || || || || | | ||||||||| || ||||| | ||||| || | Sbjct 1522 TATCCAAAGGATAACTTGGATAAAG--ATTCAGCTTTGTGGCTAAAAAAGTTGTCACTGG 1579 Query 1805 TCAATCCACAACGAAGGAAGGA-GAATATAGAAAATATGATAAA-GCTTAGGGATGGACC 1862 |||||||||||| |||| | || ||||||||| || |||||||| || | | ||||||| Sbjct 1580 TCAATCCACAACAAAGGCA-GAGGAATATAGATAAGATGATAAAGGC-TCGTAATGGACC 1637 Query 1863 AAGCGGTGGAGATATCATTGGGAATTTTGGACTGAAAGTGGCTACAAACATGACAACGGT 1922 |||||||| || |||||||| || |||||| ||||||||| ||||||||||||| |||| Sbjct 1638 GAGCGGTGGTGAAATCATTGGAAACTTTGGATTGAAAGTGGATACAAACATGACACCGGT 1697 Query 1923 GGAAGGTCGTGTACTCAAGGCTCCTA-CACTGATGTTGACTGATCAGAAAGGA-AATCCT 1980 |||||||||||||||||||||||| | || ||| |||| | || || | ||| | | | Sbjct 1698 GGAAGGTCGTGTACTCAAGGCTCC-ATCATTGAAGTTGGCAGA-GAG-AGGGAGAGT--T 1752 Query 1981 GTCAC-TGAGGAA--C--CCCG-CA-AGAACAATCAATGGAACCTTA-CAATAAAGCGAG 2032 || | ||||||| | |||| | ||||||| ||||||||||||| || ||| ||| Sbjct 1753 GT-GCGTGAGGAACCCAACCCGAGACAGAACAACCAATGGAACCTTATGAA-GAAGGGAG 1810 Query 2033 TTACAAAGGGTTCAAAAGTCAAGCATTGGGCTGTTCTTGATTTCACCGCGTCTAAGAAGC 2092 | |||| ||| || | |||||||||||||||||| ||||| ||||| || || | | Sbjct 1811 TCACAAGGGGATCTATAGTCAAGCATTGGGCTGTACTTGACTTCACTGCATC--CG-A-- 1865 Query 2093 CGCACAATT-ACAAGATGCCTGATAACTTTGTTGAGGAA-CTCACTGCGCGTTGTTCCAG 2150 | | | || ||||||||||| || ||||||| || || || | || ||||||| || Sbjct 1866 -G-AGATTTAACAAGATGCCTAATGACTTTGTGGA-TAACCTTATTGATCGTTGTTGGAG 1922 Query 2151 ACTTGGGATGAC-GTTGGAGAATCCTATCGTTCGCAAAACATTAAGTATGGATACGCTTT 2209 |||||||||| | | ||||| |||||||||| |||||||| || ||||| || |||| Sbjct 1923 ACTTGGGATG-CAGATGGAGGCTCCTATCGTTTACAAAACATCGAGAATGGAAACACTTT 1981 Query 2210 CTAATGGTAATGATCTTGAGGAATTGCTTCGATCCGTGATTGATGAGGCTT-TACTTAA- 2267 |||||||||||| | ||||||||||||||||||||||||| ||||| |||| | | ||| Sbjct 1982 CTAATGGTAATGCTATTGAGGAATTGCTTCGATCCGTGATAGATGAAGCTTCT-CGTAAG 2040 Query 2268 C-T-ATCGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTGGGAAAGTCGATGGCTAC 2325 | | | ||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 2041 CATGGTGGGGCTCGTCCAACTCTTGTTCTGTGTGCTATGTCTCGGAAAGACGATGGCTAT 2100 Query 2326 AAGACTCTGAAATGGCTAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACC 2385 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2101 AAGACTCTGAAATGGATAGCCGAGACCAAACTTGGTCTGGTGACTCAGTGTTTCTTGACT 2160 Query 2386 GGTTCTGCGAATAGGGGAGGTGATCAGTACTTGGCAAATCTCGCCCTCAAGATAAACGCA 2445 ||| |||| | || ||||||||||||||| ||||||||| ||||||||||| |||||| Sbjct 2161 GGTCCTGCCACTAAAGGAGGTGATCAGTACCGGGCAAATCTTGCCCTCAAGATGAACGCA 2220 Query 2446 AAGGTTGGTGGAACG-AACGTGGAGCTGGTGGACAATTA-TTTCTCTTTCTTCAATGAAG 2503 ||||||||||||| | || || ||||| ||| | || ||||||||||||||| ||| Sbjct 2221 AAGGTTGGTGGAA-GCAATGTCGAGCTTATGG---A-TACTTTCTCTTTCTTCAAAAAAG 2275 Query 2504 AAGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCACGACAAGATGA 2563 | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2276 AGGATGAGGTCATGTTCATTGGTGCTGATGTCAATCATCCCGCTGCTCGGGACAAGATGA 2335 Query 2564 GTCCATCCATTGTTGCTGTTGTAGGCACTCTTAACTGGCCTGAAGCTAACCGCTACGCAG 2623 | || ||||||||||||||||| || |||||||||||||||||||| || ||||| |||| Sbjct 2336 GCCCGTCCATTGTTGCTGTTGTGGGAACTCTTAACTGGCCTGAAGCAAATCGCTATGCAG 2395 Query 2624 CTAGAGTCAAAGCTCAGACTCACCGTAAAGAAGAGATACAAGGGTTTGGTGAAACTTGCT 2683 ||||||||| || ||| ||||||| ||||| || |||||||| ||||| || |||| | Sbjct 2396 CTAGAGTCATTGCCCAGCCTCACCGCAAAGAGGAAATACAAGGATTTGGCGACGCTTGTT 2455 Query 2684 TAGAGCTTGTCAATGCTCAT-TCTAATGCCACCAAG-AAACGACCTAACAAGATTGTGAT 2741 | ||||||||||| |||||| | | | ||||| | | ||||| ||||||||||||||||| Sbjct 2456 TGGAGCTTGTCAAAGCTCATGT-TCAGGCCAC-AGGGAAACGGCCTAACAAGATTGTGAT 2513 Query 2742 ATTCCGTGATGGTGTCAGTGATGGTCAGTTCGATATGGTTCTCAATGTGGAGTTACA-GA 2800 |||||||||||||||||| |||| |||||||||||||||||||||||||||||| | || Sbjct 2514 ATTCCGTGATGGTGTCAGCGATGCTCAGTTCGATATGGTTCTCAATGTGGAGTTGCTTGA 2573 Query 2801 ATGTTAAGG-ACACTTTTAAAAAGATTGAATATAATCCGTTGATAACGGTAATTGTGGCA 2859 ||||||| | |||||| | |||| || || ||||| |||||||||||| || || Sbjct 2574 -TGTTAAGCTA-ACTTTTGAGAAGAATGGTTACAATCCAAAGATAACGGTAATCGTAGCC 2631 Query 2860 CAGAAGCGTCATCAAACCCGTTTCTTCCCTGCCACAAGCAATGAT--AAG-GA------C 2910 ||||| ||||||||||||||||||||||| ||||||| |||||| ||| || | Sbjct 2632 CAGAAACGTCATCAAACCCGTTTCTTCCCAGCCACAAATAATGATGGAAGTGATAAGGGC 2691 Query 2911 AATGTGCTTTCAGGTACGGTCGTTGATAC-AAAGATCATTCACCCATTTGAGTATGATTT 2969 ||||||| |||||||||||| |||||||| |||| | |||||||| | |||||||||||| Sbjct 2692 AATGTGCCTTCAGGTACGGTTGTTGATACTAAAGTT-ATTCACCCGTATGAGTATGATTT 2750 Query 2970 CTATCTCTGCAGTCACCACGGAGGGATTGGGACAAGCAAACCAACTCATTACTATGTTCT 3029 ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| Sbjct 2751 CTACCTCTGCAGTCACCACGGAGGGATAGGGACAAGCAAACCGACTCATTACTACACTCT 2810 Query 3030 GTACGACGAAATCGGGTTCAAGTCGGATCAGATTCAGAAGCTCATATTTGACG-TGTGCT 3088 | |||||| | || |||| ||||||||| | ||||||||||| || || | |||||| Sbjct 2811 TTGGGACGAACTTGGATTCACTTCGGATCAGGTGCAGAAGCTCATCTTCGA-GATGTGCT 2869 Query 3089 TCACGTTT-ACTCGCTGCACCAAACCTGTCGCTCTGGTTCCTCCAGTTTCTTATGCTGAC 3147 |||| ||| ||||||||||||||||| ||| |||| ||||| || || | |||||||||| Sbjct 2870 TCAC-TTTCACTCGCTGCACCAAACCCGTCTCTCTTGTTCCGCCGGTGTATTATGCTGAC 2928 Query 3148 AAGGCTGCTTCTAGAGGAAGGTTGTACTACGAGGCAAGCTTTA-TGGAGAAGAACTCTAA 3206 | || ||||| |||||||||| ||||| |||||||||||| | || ||||||||| ||| Sbjct 2929 ATGGTTGCTTTTAGAGGAAGGATGTACCACGAGGCAAGCTCTCGTG-AGAAGAACTTTAA 2987 Query 3207 GCAGTCGCGTGGAGCGTCTTCATCTTCTGCTGCTTCGGTTGCCTCTTCATCCTCTTCTCT 3266 |||| |||| |||||||| | || ||||||||||| |||||||||||| |||||||| Sbjct 2988 GCAGCCGCGGGGAGCGTCAAC--CT-CTGCTGCTTCGCTTGCCTCTTCATTATCTTCTCT 3044 Query 3267 CACAGTGGAGGACAAAGAGATCTTCAAAGTT-CACACAGAGATTGAGAACAATATGTTCT 3325 ||| | |||||||||| ||| ||||| | | || ||||| ||||||| |||||||| Sbjct 3045 TACAATTGAGGACAAAGCGATTTTCAA-GCTGCATGCAGAGCTTGAGAATGTTATGTTCT 3103 Query 3326 TCGTCTGA 3333 |||||||| Sbjct 3104 TCGTCTGA 3111 Score = 84.2 bits (45), Expect = 7e-15 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 1 ATGGAGCGAGGTGGTTACCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGCGGC 54 |||||| |||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 67 ATGGAGAGAGGTGGTTATCGAGGAGGTCGTGGTGATGGCCGTGGTAGAGGTGGC 120 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 165851913558 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5