BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913375
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35250.1 | Symbols: | Thioesterase superfamily protein | ch... 815 0.0
AT1G35290.1 | Symbols: | Thioesterase superfamily protein | ch... 597 3e-170
AT1G68260.1 | Symbols: | Thioesterase superfamily protein | ch... 496 1e-139
AT1G68280.1 | Symbols: | Thioesterase superfamily protein | ch... 448 4e-125
> AT1G35250.1 | Symbols: | Thioesterase superfamily protein |
chr1:12932941-12934479 REVERSE LENGTH=686
Length=686
Score = 815 bits (441), Expect = 0.0
Identities = 527/569 (93%), Gaps = 4/569 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCAAGCTACCGGCATGGCGGCTCCAG-TTATGCATGTGGTGTTTCCCCGTTCTTG 59
||||||||||||||| ||| || |||| ||| ||||||||| || |||||||||||||||
Sbjct 15 ATGTTTCAAGCTACCAGCACGGGGGCT-CAGATTATGCATGCGGCGTTTCCCCGTTCTTG 73
Query 60 GAGGCGACGGCATATCCTGCCTCTCCGGAGCGCAAAAACCTTTAAACCCCTTGCATGTCT 119
||||||| ||||| |||||||||||||||| ||||||| ||| || ||||| ||||||||
Sbjct 74 GAGGCGAGGGCATGTCCTGCCTCTCCGGAGTGCAAAAATCTTCAAGCCCCTCGCATGTCT 133
Query 120 TGAATTGAGAGGAAGCAAAGGAATAAGTGGGTTCCATGAGATTGAACTTAAAGTTCGTGA 179
||| | |||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 134 CGAACTCAGAGGAAGCACAGGAATTGGTGGGTTCCATGAGATTGAACTTAAAGTTCGTGA 193
Query 180 TTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACA 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 194 TTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGCCAACA 253
Query 240 CGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTATACCGTTCTGG 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 254 CGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTATCCCGTTCTGG 313
Query 300 TGGAGCCTTGGCAATTCCTGAGTTGACAATAAAGTTCCTCGCACATTTACGTAGTGGATG 359
|||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 314 TGGAGCCTTGGCAATTCCTGAGTTAACAATAAAGTTCCTTGCACCTTTACGTAGTGGATG 373
Query 360 CAGGTTTGTGGTGAAAACGAGGATATCTGGGCTATCTGTGGTGCGCATTTACTTTGAACA 419
|||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 374 TAGGTTTGTGGTGAAAACGAGGATATCGGGGATATCTTTGGTGCGCATTTACTTTGAACA 433
Query 420 ATTCATCTTTAACCTTCCAAATCAAGAGCCTATTTTGGAGGCTAAAGGAACAGCTGTGTG 479
||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 434 GTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAACGGCTGTGTG 493
Query 480 GCTTGACAACAAGTACCGCCCTGCTCGTGTCCCATCTCAAGTACGCTCATATTTTGGTCA 539
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||
Sbjct 494 GCTTGACAACAAGTACCGGCCTACTCGTGTCCCATCTCATGTACGCTCATATTTTGGTCA 553
Query 540 CTTTCAACGCCAACACGTTG-TCGATTGA 567
||| || | |||||| ||| ||||||||
Sbjct 554 CTTCCAGTGTCAACAC-TTGGTCGATTGA 581
> AT1G35290.1 | Symbols: | Thioesterase superfamily protein |
chr1:12947544-12948841 REVERSE LENGTH=849
Length=849
Score = 597 bits (323), Expect = 3e-170
Identities = 491/571 (86%), Gaps = 16/571 (3%)
Strand=Plus/Plus
Query 1 ATGTTTCAAGCTACCGGCATGGCGGCTCCAGTTATGCATGTGGTGTTTCCCCGTTCTTGG 60
||| || |||||||||||| | |||||| | |||||| |||||||||||| ||| || |
Sbjct 64 ATGCTTAAAGCTACCGGCACAGTGGCTCCGGCTATGCACGTGGTGTTTCCCTGTTTTTCG 123
Query 61 AGGCGACGGCATATCCTGCCTCTCCGGAGCGCAAAAACCTTTAAACCCCT-TGCATGTCT 119
|| |||| || |||||| |||||||||||| |||| ||||| ||||| || | ||||| |
Sbjct 124 AGTCGACCGCTTATCCTACCTCTCCGGAGCACAAAGACCTTCAAACCTCTCT-CATGT-T 181
Query 120 T-GAATTG-AGAGGAAGCAAAGGAAT-AAGTGG-GTTCCATGAGATTGAACTTAAAGTTC 175
| || | | |||| |||||||||| || ||| | ||||||||||||||||||||||||
Sbjct 182 TCAAACAGCA-AGGAGGCAAAGGAATGAA-TGGAG-TCCATGAGATTGAACTTAAAGTTC 238
Query 176 GTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTC 235
||||||||||||| || || ||||||||||||||||| |||||||| ||||||||||| |
Sbjct 239 GTGATTATGAATTAGACCAATTTGGTGTTGTGAACAACGCTGTTTATGCAAACTACTGCC 298
Query 236 AACACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTATACCGTT 295
||||||||| ||||||||||||||| | |||||||||||||||| ||||||| | |||||
Sbjct 299 AACACGGTCAACACGAGTTTATGGAGACTATCGGTATCAACTGTGATGAAGTGTCCCGTT 358
Query 296 CTGGTGGAGCCTTGGCAATTCCTGAGTTGACAATAAAGTTCCTCGCACATTTACGTAGTG 355
|||||| ||| |||||| || |||| |||||||||||||| || |||| |||||||||||
Sbjct 359 CTGGTGAAGCATTGGCAGTTTCTGAATTGACAATAAAGTTTCTTGCACCTTTACGTAGTG 418
Query 356 GATGCAGGTTTGTGGTGAAAACGAGGATATCTGGG-CTATCTGTGGTGCGCATTTACTTT 414
|||||| |||||||||||||||||||||||| ||| | |||| || |||||||||||||
Sbjct 419 GATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGAC-ATCTATGACGCGCATTTACTTT 477
Query 415 GAACAATTCATCTTTAACCTTCCAAATCAAGAGCCTATTTTGGAGGCTAAAGGAACAGCT 474
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 478 GAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAATGGCT 537
Query 475 GTGTGGCTTGACAACAAGTACCGCCCTGCTCGTGTCCCATCTCA-AGTACGCTCATATTT 533
|||||||||||||| | |||||| |||| | || |||| ||| | | ||||||| || ||
Sbjct 538 GTGTGGCTTGACAAGAGGTACCGTCCTGTTTGTATCCCGTCTTACA-TACGCTC-TAATT 595
Query 534 T-GGTCACTTTCAACGCCAACACGTTGTCGA 563
| |||||||| ||||| ||||||||||||||
Sbjct 596 TCGGTCACTTCCAACGTCAACACGTTGTCGA 626
> AT1G68260.1 | Symbols: | Thioesterase superfamily protein |
chr1:25585776-25587658 REVERSE LENGTH=830
Length=830
Score = 496 bits (268), Expect = 1e-139
Identities = 470/565 (83%), Gaps = 23/565 (4%)
Strand=Plus/Plus
Query 5 TTCAAGCTACCGGCATGGCGGCTCCAGTTATGCAT---GTGGTGTTTCCCCGTTCTTGGA 61
|||| | |||||||| |||| |||| | ||||| | || ||||||| | ||| ||||
Sbjct 65 TTCAGGTTACCGGCACGGCGACTCCGGCTATGCCTGCGGTAGTGTTTCTCAATTCATGGA 124
Query 62 GGCGACGGCATA-TCCTGCCTCTCCGGAGCGCAAAAACCTTTAAACCCCTTGCATGTCTT 120
| |||| | || | | ||||||||||||| ||||||||| || || || |||| ||||
Sbjct 125 GACGACCACTTAGT-ATTCCTCTCCGGAGCGTAAAAACCTTCAAGCCTCTAGCAT-TCTT 182
Query 121 -GAAT-TGAGAGGAAGCAAAGGAATAAGTGGGTTCCATGAGATTGAACTTAAAGTTCGTG 178
| || | | |||| |||||||||| |||| |||||||||| ||||||| ||||||||||
Sbjct 183 CG-ATCTCAAAGGAGGCAAAGGAATGAGTGAGTTCCATGAGGTTGAACTCAAAGTTCGTG 241
Query 179 ATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAAC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAAC 301
Query 239 ACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTAT-ACCGTTCT 297
|||||||||| |||||| | || ||||||||||||||||| | |||||| || |||||
Sbjct 302 ACGGTCGACATGAGTTTCTAGAGAGTATCGGTATCAACTGCGACGAAGTAGCAC-GTTCT 360
Query 298 GGTGGA-GCCTTGGCAATTCCTGAGTTGACAATAAAGTTCCTCGCACATTTACGTAGTGG 356
|| ||| ||||| |||||| | ||||||||||| |||||||| ||| ||||||||| ||
Sbjct 361 GG-GGAAGCCTTAGCAATTTCAGAGTTGACAATGAAGTTCCTTTCACCTTTACGTAGCGG 419
Query 357 ATG-CAGGTTTGTGGTGAAAACGAGGATATCTGGG-CTATCTG-TGGTGCGCATTTACTT 413
| | || || ||||||||| |||||||||| ||| | ||||| || ||| ||||||||
Sbjct 420 A-GACAAATTCGTGGTGAAAGCGAGGATATCGGGGAC-ATCTGCTGC-GCGTATTTACTT 476
Query 414 TGAACAATTCATCTTTAACCTTCCAAATCAAGAGCCTATTTTGGAGGCTAAAGGAACAGC 473
|| || ||||||||||| |||||||||||||||||||| |||||||| ||||||| |||
Sbjct 477 CGATCATTTCATCTTTAAACTTCCAAATCAAGAGCCTATATTGGAGGCAAAAGGAATAGC 536
Query 474 TGTGTGGCTTGACAACAAGTACCGCCCTGCTCGTGTCCCATCT-CAAGTACGCTC-ATAT 531
||||||||| |||||||||||||| |||| ||| |||||||| | | |||| || | ||
Sbjct 537 TGTGTGGCTCGACAACAAGTACCGTCCTGTTCGCATCCCATCTTCTA-TACGTTCTAAAT 595
Query 532 TTTGGTCACTTTCAACGCCAACACG 556
|| | |||||| | ||||||| |||
Sbjct 596 TT-GTTCACTTCCTACGCCAAGACG 619
> AT1G68280.1 | Symbols: | Thioesterase superfamily protein |
chr1:25592467-25593595 REVERSE LENGTH=567
Length=567
Score = 448 bits (242), Expect = 4e-125
Identities = 458/559 (82%), Gaps = 28/559 (5%)
Strand=Plus/Plus
Query 12 TACCGGCATGGCGGCTCCAGTTATG-CATGTGGTGTTTCC-CCGTTCTTGGAGGCGA-CG 68
|||||||| ||||||||| | |||| | |||||||||||| | ||| ||||| | | ||
Sbjct 12 TACCGGCACGGCGGCTCCGGCTATGTC-TGTGGTGTTTCCGAC-TTCATGGAGACAACCG 69
Query 69 GCATATCCTGCCTCTCCGGAGCGCAAAAACCTTTAAACCCCTTGCATGTCTTGAAT-TGA 127
| ||| || ||||||||||||||||| ||||| || || | ||| ||||| || | |
Sbjct 70 G-TTATGCTTCCTCTCCGGAGCGCAAAGACCTTCAAGCCTCACACATTTCTTG-ATCTTA 127
Query 128 GAGGAAGCAAAGGAATAAGTGGGTTCCATGAGATTGAACTTAAAGTTCGTGATTATGAAT 187
|||| |||||| ||| |||| |||||||||| |||| ||||||||||||||||||||||
Sbjct 128 AAGGAGGCAAAGAAATGAGTGAGTTCCATGAGGTTGAGCTTAAAGTTCGTGATTATGAAT 187
Query 188 TGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGTCAACACGG--TCG 245
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 188 TGGATCAGTTTGGTGTTGTGAACAATGCTGTTTACGCAAACTACTGCCAACACGGCAT-G 246
Query 246 ACACGAGTTTATGGATAGTATCGGTATCAACTGTAATGAAGTATACC-GTTCTGGTGGAG 304
||||| ||| | || ||||| |||||||||||| ||||||| | || ||||||||| ||
Sbjct 247 -CACGAATTTCTAGAGAGTATTGGTATCAACTGTGATGAAGT-TGCCCGTTCTGGTGAAG 304
Query 305 CCTTGGCAAT-TCCTGAGTTGACAATAAAGTTCCTCGCACATTTACGTAGTGGATG-CAG 362
|||| ||||| || ||||||||||| || ||||| |||| ||||||||| ||| | ||
Sbjct 305 CCTTAGCAATATCA-GAGTTGACAATGAATTTCCTTGCACCTTTACGTAGCGGA-GACAA 362
Query 363 GTTTGTGGTGAAAACGAGGATATCTGGG-CTATCTG-TGGTGCGCATTTACTTTGAACAA 420
|||||| |||||| || |||||| | | ||||| || ||| |||||||| || ||
Sbjct 363 GTTTGTAGTGAAAGTGAACATATCTAGAAC-ATCTGCTGC-GCGTATTTACTTCGATCA- 419
Query 421 TTC-ATCTTTAACCTTCCAAATCAAGAGCCTATTTTGGAGGCTAAAGGAACAGCTGTGTG 479
||| ||||| || ||||||||||||||| ||| |||||||| |||| ||||| ||| ||
Sbjct 420 TTCCATCTTGAAACTTCCAAATCAAGAGGTTATATTGGAGGCGAAAGCAACAGTTGTATG 479
Query 480 GCTTGACAACAAGTACCGCCCTGCTCGTGTCCCATCT-CAAGTACGCTC-ATATTTTGGT 537
||||||||||||| |||| |||| |||| |||||||| | | ||||||| | |||| | |
Sbjct 480 GCTTGACAACAAGCACCGTCCTGTTCGTATCCCATCTTCGA-TACGCTCTAAATTT-GTT 537
Query 538 CACTTTCAACGCCAACACG 556
||||| | ||||||| |||
Sbjct 538 CACTTCCTACGCCAAAACG 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5