BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913378
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35310.1 | Symbols: MLP168 | MLP-like protein 168 | chr1:129... 442 1e-123
AT1G35260.1 | Symbols: MLP165 | MLP-like protein 165 | chr1:129... 436 5e-122
> AT1G35310.1 | Symbols: MLP168 | MLP-like protein 168 | chr1:12956159-12957090
REVERSE LENGTH=791
Length=791
Score = 442 bits (239), Expect = 1e-123
Identities = 318/355 (90%), Gaps = 10/355 (3%)
Strand=Plus/Plus
Query 2 TACAGGGATGTGATCTGCTCGAAGGCGAGTGGGGCAAAGTTGGAAGCATACTCTTGTGGA 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 173 TACAGGGATGTGATCTGCTCGAAGGCGAGTGGGGCGAAGTTGGAAGCATACTCTTGTGGA 232
Query 62 AATTAACTTTTGATGGAGAGCCGAGAGTGTCGAAGGATAGGATCGAGGGGATTGATGTGG 121
|||||||| ||||||||||||| | |||||| ||||||| ||| |||| ||||||| ||
Sbjct 233 AATTAACTGTTGATGGAGAGCCAAAAGTGTCAAAGGATATGATTGAGGCGATTGATATGA 292
Query 122 AGAAT-AATGTGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGAAAGAGTACAAGAGC 180
|| || ||| ||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 293 AG-ATGAATATGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGGAAGAGTACAATATT 351
Query 181 TTCTTGAAAACGATGAAAGTGAGCCCTAAGCAAGGAGGGACTGGAAGTGTGGTGAAGTGG 240
|||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 352 TTCTCGAAAACGATGAAAGTAAGCCCTAAGCAAGGAGGGTCTGGAAGTGTGGTGAAGTGG 411
Query 241 AACATGAAGTATGAGAGGATTGATGAGAAGGTGGTTCACCCAGAGAGGCTGCT-CAAGTT 299
||| ||||||||||||| |||||||||||||||| ||||| ||||||||| || || |||
Sbjct 412 AACTTGAAGTATGAGAGAATTGATGAGAAGGTGGCTCACCTAGAGAGGCTCCTTCA-GTT 470
Query 300 CTTTGTTGAA-GTGATTA-C-AGAAGTTGACCAATACCTCTTGTCTGAGGATTAG 351
||| || ||| ||| ||| | ||| ||||||||||||| |||||||||| ||||
Sbjct 471 CTTCGTCGAATGTG-TTAACGAGA--TTGACCAATACCTATTGTCTGAGGGTTAG 522
> AT1G35260.1 | Symbols: MLP165 | MLP-like protein 165 | chr1:12936849-12937787
REVERSE LENGTH=767
Length=767
Score = 436 bits (236), Expect = 5e-122
Identities = 314/351 (89%), Gaps = 7/351 (2%)
Strand=Plus/Plus
Query 5 AGGGATGTGATCTGCTCGAAGGCGAGTGGGGCAAAGTTGGAAGCATACTCTTGTGGAAAT 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 208 AGGGATGTGATCTGCTCGAAGGCGAGTGGGGAAAAGTTGGAAGCATACTCTTGTGGAAAT 267
Query 65 TAACTTTTGATGGAGAGCCGA-GAGTGTCGAAGGATAGGATCGAGGGGATTGATGTGGAG 123
|| ||||||||||||||| | ||||||| ||||||| |||||||| || |||| ||||
Sbjct 268 TAGTTTTTGATGGAGAGCC-ACGAGTGTCAAAGGATATGATCGAGGTAATAGATGAGGAG 326
Query 124 AATAATGTGATCCAGTGGAGGGTGTTAGAGGGACCTCTGAAGAAAGAGTACAAGAGCTTC 183
|| |||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 327 AAGAATGTGATTCAGTTGAGGGTGTTAGAGGGACCTCTGAAGAAAGAATACAAGAGCTTC 386
Query 184 TTGAAAACGATGAAAGTGA-G--CCCTAAGCAAGGAGGGACTGGAAGTGTGGTGAAGTGG 240
|||||||||||||||||| | ||||||||| |||||| | ||||||||||||||||||
Sbjct 387 CTGAAAACGATGAAAGTGATGAGCCCTAAGCATGGAGGGCCCGGAAGTGTGGTGAAGTGG 446
Query 241 AACATGAAGTATGAGAGGATTGATGAGAAGGTGGTTCACCCAGAGAGGCTGCTCAAGTTC 300
|||||||| ||||||||||||||| |||| |||| ||||||| | ||||| ||| |||||
Sbjct 447 AACATGAAATATGAGAGGATTGATCAGAACGTGGATCACCCAAACAGGCTTCTCCAGTTC 506
Query 301 TTTGTTGAAGTGATTACAGA-AGTTGACCAATACCTCTTGTCTGAGGATTA 350
|| || ||||||| || ||| | |||||||||||||||||||| |||||||
Sbjct 507 TTCGTCGAAGTGACTAAAGAGA-TTGACCAATACCTCTTGTCTAAGGATTA 556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16437553923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5