BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913382
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35250.1 | Symbols: | Thioesterase superfamily protein | ch... 553 8e-157
AT1G35290.1 | Symbols: | Thioesterase superfamily protein | ch... 534 3e-151
> AT1G35250.1 | Symbols: | Thioesterase superfamily protein |
chr1:12932941-12934479 REVERSE LENGTH=686
Length=686
Score = 553 bits (299), Expect = 8e-157
Identities = 410/462 (89%), Gaps = 13/462 (3%)
Strand=Plus/Plus
Query 99 CTTCAAGCCTCTCGCATGCCTCGAACTAAAAAGAGGCAAAGGAA-AGAGTAGTTTCCCTG 157
||||||||| |||||||| |||||||| | | || ||| ||||| | || | |||| ||
Sbjct 113 CTTCAAGCCCCTCGCATGTCTCGAACTCAGAGGAAGCACAGGAATTG-GTGGGTTCCATG 171
Query 158 AGATTGAACTTAAAGTTCGCGATTATGAATTGGATCCGTTTGGTGTTGTGAACAATGCTG 217
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 172 AGATTGAACTTAAAGTTCGTGATTATGAATTGGATCAGTTTGGTGTTGTGAACAATGCTG 231
Query 218 TTTATGCAAACTACTGCCAACACGGTCGACACGAGTTCATGGAGAGTATCGGTATCAACT 277
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 232 TTTACGCAAACTACTGCCAACACGGTCGACACGAGTTTATGGATAGTATCGGTATCAACT 291
Query 278 GTGATGAAGTATCCCGTTCTGGTGAAGCCTTGGCAATTTCTGAGTTTACAATAAAGTTCC 337
|| ||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||
Sbjct 292 GTAATGAAGTATCCCGTTCTGGTGGAGCCTTGGCAATTCCTGAGTTAACAATAAAGTTCC 351
Query 338 TTGCACCTTTACGACAGAGTGGATGCAAATTTGTAATGAAATCAAGGATATCGGG-AGTA 396
||||||||||||| || |||||| | ||||| ||||| | ||||||||||| | ||
Sbjct 352 TTGCACCTTTACGT-AG--TGGATGTAGGTTTGTGGTGAAAACGAGGATATCGGGGA-TA 407
Query 397 T-TTGTGGCACGCATTTACTTTGAACAGTTCATCTTCAAACTTCCAAATCTAGAGCCTAT 455
| || ||| |||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 408 TCTT-TGGTGCGCATTTACTTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTAT 466
Query 456 TTTGGAGGCAAAAGGAACCGG-TGTGTGGCTTGACAACAAGTACCGACCTGCTCGTGTCC 514
|||||||||||||||||| || |||||||||||||||||||||||| ||| |||||||||
Sbjct 467 TTTGGAGGCAAAAGGAAC-GGCTGTGTGGCTTGACAACAAGTACCGGCCTACTCGTGTCC 525
Query 515 CATCTCATATACGCTC-TCATTTCGTTCACTTCCAACGTCAA 555
|||||||| ||||||| | |||| | ||||||||| |||||
Sbjct 526 CATCTCATGTACGCTCAT-ATTTTGGTCACTTCCAGTGTCAA 566
> AT1G35290.1 | Symbols: | Thioesterase superfamily protein |
chr1:12947544-12948841 REVERSE LENGTH=849
Length=849
Score = 534 bits (289), Expect = 3e-151
Identities = 474/562 (84%), Gaps = 17/562 (3%)
Strand=Plus/Plus
Query 1 ATGTTTCAAGCTACTGGCAGGGCAGCTCCGGCAATGCATGTAATGTTTCCATGTTCGTCA 60
||| || ||||||| |||| | |||||||| ||||| || ||||||| |||| ||
Sbjct 64 ATGCTTAAAGCTACCGGCACAGTGGCTCCGGCTATGCACGTGGTGTTTCCCTGTTTTTCG 123
Query 61 AGGAGACCAG-TTATCAT-CCTTCTCCGGAAC-CTAACGACCTTCAAGCCTCTCGCATGC 117
|| |||| | ||||| | || |||||||| | | || ||||||||| |||||| ||||
Sbjct 124 AGTCGACC-GCTTATCCTACC-TCTCCGGAGCAC-AAAGACCTTCAAACCTCTCTCATGT 180
Query 118 CTCGAACTA-AAAAGAGGCAAAGGAAAGAGTAGTTTCCCTGAGATTGAACTTAAAGTTCG 176
|| ||| | || |||||||||||| || | | ||| |||||||||||||||||||||
Sbjct 181 TTCAAAC-AGCAAGGAGGCAAAGGAATGAATGGAGTCCATGAGATTGAACTTAAAGTTCG 239
Query 177 CGATTATGAATTGGATCC-GTTTGGTGTTGTGAACAATGCTGTTTATGCAAACTACTGCC 235
||||||||||| || || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 240 TGATTATGAATTAGA-CCAATTTGGTGTTGTGAACAACGCTGTTTATGCAAACTACTGCC 298
Query 236 AACACGGTCGACACGAGTTCATGGAGAGTATCGGTATCAACTGTGATGAAGTATCCCGTT 295
||||||||| ||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 299 AACACGGTCAACACGAGTTTATGGAGACTATCGGTATCAACTGTGATGAAGTGTCCCGTT 358
Query 296 CTGGTGAAGCCTTGGCAATTTCTGAGTTTACAATAAAGTTCCTTGCACCTTTACGACAGA 355
|||||||||| |||||| ||||||| || ||||||||||| |||||||||||||| ||
Sbjct 359 CTGGTGAAGCATTGGCAGTTTCTGAATTGACAATAAAGTTTCTTGCACCTTTACGT-AG- 416
Query 356 GTGGATGCAAATTTGTAATGAAATCAAGGATATCGGG-AGTATTTGTGGCACGCATTTAC 414
||||||||| ||||| ||||| | ||||||||||| | || | || | |||||||||
Sbjct 417 -TGGATGCAAGTTTGTGGTGAAAACGAGGATATCGGGGAC-ATCTATGACGCGCATTTAC 474
Query 415 TTTGAACAGTTCATCTTCAAACTTCCAAATCTAGAGCCTATTTTGGAGGCAAAAGGAACC 474
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 475 TTTGAACAGTTCATCTTTAAACTTCCAAATCAAGAGCCTATTTTGGAGGCAAAAGGAAT- 533
Query 475 GG-TGTGTGGCTTGACAACAAGTACCGACCTGCTCGTGTCCCATCTCATATACGCTCTCA 533
|| ||||||||||||||| | |||||| |||| | || |||| ||| | ||||||||| |
Sbjct 534 GGCTGTGTGGCTTGACAAGAGGTACCGTCCTGTTTGTATCCCGTCTTACATACGCTCTAA 593
Query 534 TTTCGTTCACTTCCAACGTCAA 555
||||| ||||||||||||||||
Sbjct 594 TTTCGGTCACTTCCAACGTCAA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27377610115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5