BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913385
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35330.1 | Symbols: | RING/U-box superfamily protein | chr1... 1336 0.0
> AT1G35330.1 | Symbols: | RING/U-box superfamily protein | chr1:12965046-12966113
FORWARD LENGTH=984
Length=984
Score = 1336 bits (723), Expect = 0.0
Identities = 902/989 (91%), Gaps = 9/989 (1%)
Strand=Plus/Plus
Query 1 ATGACAATCGGAAAGAGTCCGATCTTGGGACGTCATCATGTTGTCTTCCTATTGTTGCTT 60
||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 1 ATGACAATCGGGAAGAGTCCGATCTTGCTACATCATCATGTTATCTTCCTATTGTTGCTT 60
Query 61 GTTCTCCAAGTCACCGGCCAGCAGAAGCCTGGAACCATTGGTCCACCGTATAGTGCCCAA 120
||||||||||||| |||||||| ||||| |||||| || ||||||||||| |||||||
Sbjct 61 GTTCTCCAAGTCAGTGGCCAGCATCAGCCTAGAACCACTGCTCCACCGTATATTGCCCAA 120
Query 121 AGACCGAAA-CAAATACCCGCGGTAATCATTGGGATGCTTATGTTCACGCTTTTATTCAG 179
||||| ||| ||| ||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 121 AGACC-AAATCAAGTACCCGCAGTAATCATTGCGATGCTTATGTTCACGCTCTTATTCAG 179
Query 180 CTTGTTTGCTTGCTGCGTTTGCTT-TAAATACACAAGCACTTCTCCTCATGGAACTAGCT 238
| |||| ||||| || ||||| || ||||||||||| ||| |||||||||||||| ||||
Sbjct 180 CATGTTGGCTTGTTGTGTTTG-TTATAAATACACAAACACATCTCCTCATGGAACCAGCT 238
Query 239 CTGATACCGAAGAAGGAGGTCATGGAGAAGTAGCGTTTACGAGGAGAACAAGCCGTGGAC 298
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 CTGATACCGAAGAGGGAGGTCATGGAGAAGTAGCGTTTACAAGGAGAACAAGCCGTGGAC 298
Query 299 TTGGAAAGGATGTGATAACGTCTTTTCCTTCCTTTCTTTACTCACAAGTTAAAGGGCTAA 358
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 299 TTGGAAAGGATGTGATAAATTCGTTTCCTTCCTTTCTTTACTCACAAGTTAAAGGGCTAA 358
Query 359 AGATAGGCAAAGGCGGCGTGGAATGTGCCATCTGCCTGAACGAGTTTGAGGACGAAGAAA 418
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||||
Sbjct 359 AGATAGGCAAAGGCGGTGTGGAATGTGCGATCTGCCTGAATGAGTTTGAGGACGAGGAAA 418
Query 419 CATTGCGTTTGATGCCTCCTTGTAGCCATGTATTTCATGCTAGTTGCATAGATGTCTGGC 478
| ||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 419 CGCTGCGTTTAATGCCTCCTTGTAGCCATGCATTTCATGCTAGTTGCATTGATGTCTGGC 478
Query 479 TCTCTTCTCGCTCCACATGTCCTGTTTGCCGTGCTAGTCTCCTTCCCAAACCAGGCAGTG 538
| |||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||| |
Sbjct 479 TGTCTTCTCGGTCCACATGTCCAGTTTGCCGTGCAAGTCTCCCTCCCAAACCAGGCAGCG 538
Query 539 ATCAAATCTCTTTGTATCCATTTATACGCCCACATGATAATCAAGATATGGATGATCTTG 598
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 539 ATCAAAACTCTTTGTATCCATTTATACGCCCACATGATAATCAAGATATGGAT---CTTG 595
Query 599 AAACTGGAAACGCGCGAAGAAGTGTATTGGAATCTCCAGATCAACATTTGTTAGATAGAT 658
||| || || ||||||||||||||||||||| ||||||||| || |||| |||||||||
Sbjct 596 AAAATGTAACCGCGCGAAGAAGTGTATTGGAGTCTCCAGATGTACGTTTGCTAGATAGAT 655
Query 659 TGACATGGAGCAATAACACCAGGGCAAACAGACCGCCTCGATCGAGGTCTACAGGGTTGT 718
|| ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||| |
Sbjct 656 TGTCATGGAGCAATAACACCGGGGCAAATACACCGCCTCGATCGAGGTCTACAGGGTTAT 715
Query 719 CAAACTGGAGAATAACGGAGATTTTGTTCCCAAGATCCCATTCAACGGGACATTCTCTAG 778
|||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct 716 CAAACTGGAGAATAACGGAGCTTTTGTTCCCAAGATCCCATTCGACTGGACATTCTCTAG 775
Query 779 TACCAATTGGAGAGAACCTTGACAGATTTACATTGCAGTTACCGGAAGAGGTACGGAGGC 838
||||| || ||| |||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 776 TACCACGTGTAGAAAACCTTGACAGATTCACATTGCAGTTACCGGAAGAAGTACGAAGGC 835
Query 839 AATTGAGCCACACGACGACGTTACCAAAAGCTAGGAGTTCAAG-GCAAGGGTATAGGAGC 897
|| ||||||||| || |||||||||| |||||||||||||||| | |||| ||||||||
Sbjct 836 AACTGAGCCACATGAAGACGTTACCACAAGCTAGGAGTTCAAGAG-AAGGCTATAGGAGT 894
Query 898 GGTAGCGTTGGGAGCGAGAGAAGAGCAAAAGGCAAGGAAAGAGAGTTTGGTGAAGGGTCA 957
||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 895 GGTAGCGTTGGAAGCGAGAGAAGAGGAAAAGGCAAGGAAAAAGAGTTTGGTGAAGGGTCA 954
Query 958 TTTGATCGCCTTAAGCCAGAGATGGTCTA 986
||||||||||||||| |||||||||||||
Sbjct 955 TTTGATCGCCTTAAGGCAGAGATGGTCTA 983
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5