BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913391
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family pr... 643 0.0
AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774 RE... 490 6e-138
> AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:26564188-26566853 FORWARD LENGTH=2378
Length=2378
Score = 643 bits (348), Expect = 0.0
Identities = 393/415 (95%), Gaps = 2/415 (0%)
Strand=Plus/Plus
Query 184 AGAGCCACACTCGACGATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATAT 243
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1303 AGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATAC 1362
Query 244 GATGTTGATTTGGTAGAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAA 302
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1363 GATGTTGATTTGGTAGAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAA 1421
Query 303 CACCGCCGTAGTCGAAGCTGACGGAAAATCTCTGTCGCTTATGCTCGTCGGGAAATTAAT 362
||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1422 CACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAAT 1481
Query 363 CGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAA 422
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1482 CGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAA 1541
Query 423 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGT 482
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 1542 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGT 1601
Query 483 CAACGTATATCTCAAGGCGCATCCATGGGTATCGGAAGCGGAGAGGGAGAAGATCTGCGG 542
| ||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 1602 CGACGTATATCTCAAGGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGG 1661
Query 543 CGTGATGGATTGTCAGAAACTGACGTTGGAAACGTGCACACACGCCGCGCAAAAC 597
||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1662 CGTGATGGATTGTCAGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAAC 1716
Score = 274 bits (148), Expect = 7e-73
Identities = 174/186 (94%), Gaps = 3/186 (2%)
Strand=Plus/Plus
Query 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 60
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137
Query 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTTCATCTCC 120
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197
Query 121 TCAAC---GAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 177
||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257
Query 178 ATTTGC 183
||||||
Sbjct 1258 ATTTGC 1263
> AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774
REVERSE LENGTH=2719
Length=2719
Score = 490 bits (265), Expect = 6e-138
Identities = 300/317 (95%), Gaps = 2/317 (1%)
Strand=Plus/Minus
Query 184 AGAGCCACACTCGACGATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATAT 243
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1079 AGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATAC 1020
Query 244 GATGTTGATTTGGTAGAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAA 302
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1019 GATGTTGATTTGGTAGAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAA 961
Query 303 CACCGCCGTAGTCGAAGCTGACGGAAAATCTCTGTCGCTTATGCTCGTCGGGAAATTAAT 362
||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||||
Sbjct 960 CACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAAT 901
Query 363 CGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAA 422
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 900 CGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAA 841
Query 423 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGT 482
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 840 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGT 781
Query 483 CAACGTATATCTCAAGG 499
| |||||||||||||||
Sbjct 780 CGACGTATATCTCAAGG 764
Score = 274 bits (148), Expect = 7e-73
Identities = 174/186 (94%), Gaps = 3/186 (2%)
Strand=Plus/Minus
Query 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 60
|||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1304 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1245
Query 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTTCATCTCC 120
||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 1244 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1185
Query 121 TCAAC---GAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 177
||||| |||||||||||||||||| ||||||||||| ||||||||||||||| |||||
Sbjct 1184 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1125
Query 178 ATTTGC 183
||||||
Sbjct 1124 ATTTGC 1119
Score = 159 bits (86), Expect = 2e-38
Identities = 96/101 (95%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 497 AGGCGCATCCATGGGTATCGGAAGCGGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTC 556
||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||
Sbjct 684 AGGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTC 625
Query 557 AGAAACTGACGTTGGAAACGTGCACACACGCCGCGCAAAAC 597
||||||||||||||||| |||||||||||||||||||||||
Sbjct 624 AGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAAC 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28884634525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5