BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg913391 Length=600 Score E Sequences producing significant alignments: (Bits) Value AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family pr... 643 0.0 AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774 RE... 490 6e-138 > AT5G66560.1 | Symbols: | Phototropic-responsive NPH3 family protein | chr5:26564188-26566853 FORWARD LENGTH=2378 Length=2378 Score = 643 bits (348), Expect = 0.0 Identities = 393/415 (95%), Gaps = 2/415 (0%) Strand=Plus/Plus Query 184 AGAGCCACACTCGACGATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATAT 243 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1303 AGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATAC 1362 Query 244 GATGTTGATTTGGTAGAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAA 302 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 1363 GATGTTGATTTGGTAGAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAA 1421 Query 303 CACCGCCGTAGTCGAAGCTGACGGAAAATCTCTGTCGCTTATGCTCGTCGGGAAATTAAT 362 ||||||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||| Sbjct 1422 CACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAAT 1481 Query 363 CGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAA 422 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 1482 CGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAA 1541 Query 423 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGT 482 |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 1542 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGT 1601 Query 483 CAACGTATATCTCAAGGCGCATCCATGGGTATCGGAAGCGGAGAGGGAGAAGATCTGCGG 542 | ||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||| Sbjct 1602 CGACGTATATCTCAAGGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGG 1661 Query 543 CGTGATGGATTGTCAGAAACTGACGTTGGAAACGTGCACACACGCCGCGCAAAAC 597 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1662 CGTGATGGATTGTCAGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAAC 1716 Score = 274 bits (148), Expect = 7e-73 Identities = 174/186 (94%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 60 |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1078 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1137 Query 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTTCATCTCC 120 ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| Sbjct 1138 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1197 Query 121 TCAAC---GAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 177 ||||| |||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 1198 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1257 Query 178 ATTTGC 183 |||||| Sbjct 1258 ATTTGC 1263 > AT5G66558.1 | Symbols: | other RNA | chr5:26563964-26566774 REVERSE LENGTH=2719 Length=2719 Score = 490 bits (265), Expect = 6e-138 Identities = 300/317 (95%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 184 AGAGCCACACTCGACGATTTGCTCGTCCCTAGCTACTCATACCTTAACGAGACTTTATAT 243 |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1079 AGAGCCACGCTCGACGATTTGCTCGTCCCTAGCTACTCATACCTCAACGAGACTTTATAC 1020 Query 244 GATGTTGATTTGGTAGAGAGAATCTTA-GCTCACTTTCTCGACACCTTGGAACAATCAAA 302 ||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 1019 GATGTTGATTTGGTAGAGAGAATCTTAGGC-CACTTTCTCGACACCTTGGAACAATCCAA 961 Query 303 CACCGCCGTAGTCGAAGCTGACGGAAAATCTCTGTCGCTTATGCTCGTCGGGAAATTAAT 362 ||||||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||| Sbjct 960 CACCGCCATAGTCGAAGTTGACGGAAAATCTCCGTCGCTGATGCTCGTCGGGAAATTAAT 901 Query 363 CGACGGATTTCTCGCTGAGATCGCATCCGACGCTAATCTCAAATCGGATAAATTCTACAA 422 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 900 CGACGGATTTCTCGCGGAGATCGCATCGGACGCTAATCTCAAATCGGATAAGTTCTACAA 841 Query 423 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTACGATGACGGACTCTATAGAGCCGT 482 |||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 840 TCTAGCCATCTCACTCCCAGATCAAGCTCGTCTCTATGATGACGGACTTTACAGAGCCGT 781 Query 483 CAACGTATATCTCAAGG 499 | ||||||||||||||| Sbjct 780 CGACGTATATCTCAAGG 764 Score = 274 bits (148), Expect = 7e-73 Identities = 174/186 (94%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 1 ATTCTACGCTCTAACCGGAAACCGCCATCGTCATCTTCTACTGCAGTTTCAGAGAATGAA 60 |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1304 ATTCTACGTTCTAACCGGAAACCGCCATCGTCATCTTCAACCGCAGTTTCAGAGAATGAA 1245 Query 61 CAGAGAGAACTACTGGAGACTATAACCTCTAATCTTCCATTAGATAAAAGCTTCATCTCC 120 ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||| Sbjct 1244 CAGAGAGAACTACTGGAAACAATAACCTCTAATCTTCCATTAGATAAAAGCTCCATCTCC 1185 Query 121 TCAAC---GAGATTCCTCTTCGGCTTGTTACGAACCGCCATCATCCTCAACGCCTCCGAG 177 ||||| |||||||||||||||||| ||||||||||| ||||||||||||||| ||||| Sbjct 1184 TCAACAACGAGATTCCTCTTCGGCTTATTACGAACCGCAATCATCCTCAACGCCGCCGAG 1125 Query 178 ATTTGC 183 |||||| Sbjct 1124 ATTTGC 1119 Score = 159 bits (86), Expect = 2e-38 Identities = 96/101 (95%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 497 AGGCGCATCCATGGGTATCGGAAGCGGAGAGGGAGAAGATCTGCGGCGTGATGGATTGTC 556 ||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||| Sbjct 684 AGGCGCATCCATGGGTATCGGAAGCAGAGAGAGAGAAAATATGCGGCGTGATGGATTGTC 625 Query 557 AGAAACTGACGTTGGAAACGTGCACACACGCCGCGCAAAAC 597 ||||||||||||||||| ||||||||||||||||||||||| Sbjct 624 AGAAACTGACGTTGGAAGCGTGCACACACGCCGCGCAAAAC 584 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28884634525 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5