BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913393
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35365.1 | Symbols: | Protein of unknown function (DUF1184)... 427 5e-119
AT3G27900.1 | Symbols: | Protein of unknown function (DUF1184)... 318 3e-86
AT1G35410.1 | Symbols: | Protein of unknown function (DUF1184)... 113 2e-24
AT1G35400.1 | Symbols: | Protein of unknown function (DUF1184)... 113 2e-24
> AT1G35365.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:12991392-12992145 FORWARD LENGTH=540
Length=540
Score = 427 bits (231), Expect = 5e-119
Identities = 333/382 (87%), Gaps = 7/382 (2%)
Strand=Plus/Plus
Query 1 ATGGAATCAATGTCAATTACTCACCGTGTTGTCCG-ACACGACAAGAGATTACCACAGTC 59
|||||||||||||||| ||| |||| |||||||| | || |||||||||||||||||||
Sbjct 1 ATGGAATCAATGTCAACGACTGACCGCGTTGTCCGTA-ACAACAAGAGATTACCACAGTC 59
Query 60 TAGATATTCTCCTTACATTTTAGGGTCAGTGACCA-CTACTATTCCTTACACTAAAGAGA 118
|||||||||||||||||||||| |||||| || | ||||||||| | ||| |||| |||
Sbjct 60 TAGATATTCTCCTTACATTTTAAGGTCAGA-ACTATCTACTATTCATAACAGTAAAAAGA 118
Query 119 CTGATCTTACCATTGAGAGGCAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGC 178
|| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
Sbjct 119 CTAATCTTACCATTGAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCAC 178
Query 179 TCTTTGTGGCTGAAGCAATGTTCATATTATCCGATGACCTACGTTCTATGTTACTCTTCT 238
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 179 TCTTTATGGCTGAAGCAATGTTCATATTATCTGATGACCTACGTTCTATGTTACTCCTCT 238
Query 239 TTCCTTTGGTAGTGAAGTATGCCGGGTACAAAAATACTAATGACGGTCCCGTGAGAGAAA 298
||||||| ||||||||||||| || | ||| |||||||||| ||||| |||||||||
Sbjct 239 GTCCTTTGATAGTGAAGTATGCAGGTTTTAAATATACTAATGATGGTCCTGTGAGAGAAG 298
Query 299 GCTCTTTTGGTGATGTAGTAAAATTACAGACTGATTTTGAACACTACAACCAAGAGCTGA 358
|||||| ||||| || || ||| | |||||||||||||||| ||||||||| |||
Sbjct 299 GCTCTTGTGGTGGCGTCGTGAAAC--CTT-CTGATTTTGAACACTATAACCAAGAGATGA 355
Query 359 AGAAGCTAGAGGAGACATTGAG 380
||||||| ||||||| |||||
Sbjct 356 AGAAGCTGGAGGAGATGTTGAG 377
> AT3G27900.1 | Symbols: | Protein of unknown function (DUF1184)
| chr3:10352905-10353639 REVERSE LENGTH=735
Length=735
Score = 318 bits (172), Expect = 3e-86
Identities = 257/297 (87%), Gaps = 10/297 (3%)
Strand=Plus/Plus
Query 291 GAGAGAAAGCTCTT-TTGGTGATGTAGTAAAATTACAGACTGATTTTGAACACTACAACC 349
|||||||||||||| || |||| ||||| ||| || | ||||||||||||||| ||||
Sbjct 444 GAGAGAAAGCTCTTCTT-GTGAGGTAGTGAAA--AC-GTCTGATTTTGAACACTGTAACC 499
Query 350 AAGAGCTGAAGAAGCTAGAGGAGACATTGAGCTCTGCCAAAGATGTTTCAGAGGCGAACG 409
||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 500 AAGAGCTGAAGAAGCTAGAGGAGACGTTGAGGTCTGCCAAAGATGTTTCAGAAGCGAATG 559
Query 410 GATTTGCGAGAGAAGCGATAAAGTCTAACATTCTTCATATGTGGGAGTCTCTCTTTGAAA 469
|||| |||||||||| ||||||||||||||| ||| | ||||| |||||||||||||||
Sbjct 560 GATTCGCGAGAGAAGTGATAAAGTCTAACATACTTTGTTTGTGGAAGTCTCTCTTTGAAA 619
Query 470 CA-C-CATCC-AAGTTGATACACCCTAAGGTTAGAA-TGCTTGAGATGTTTAGGCCTCTG 525
|| | || || ||| ||||| ||| |||| ||||| | ||||| ||||||| ||||||
Sbjct 620 CATCACAACCCAAGGTGATAAACCTTAAGAATAGAACT-CTTGATATGTTTAAGCCTCTC 678
Query 526 TTGAACCAATCAAGGGAGAATATTTGCTCTCGTCTTATTGCTTCTTTACACATATGA 582
||||||||| ||||||||| || ||||||| ||||||||||||| ||||||||||||
Sbjct 679 TTGAACCAAGCAAGGGAGATTACTTGCTCTAGTCTTATTGCTTCATTACACATATGA 735
Score = 148 bits (80), Expect = 4e-35
Identities = 113/129 (88%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 133 GAGAGGCAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAA 192
|||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 115 GAGATGCAGAAAGATGAGGCTATACGATTGGGAGTTGAGCTCTCGCTCTTTGTGGCTGAA 174
Query 193 GCAATGTTCATATTATCCGATGACCTACGTTCTATGTTACTCTTCTTTCCTTTGG-TAGT 251
||||| || ||||||| || ||||||||||||||||||| |||| || ||||| || |
Sbjct 175 ACAATGGTCTTATTATCTGACAACCTACGTTCTATGTTACTGTTCTGTC-TTTGGGTATT 233
Query 252 GAAGTATGC 260
|| | ||||
Sbjct 234 GACGAATGC 242
> AT1G35410.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:13024161-13024941 FORWARD LENGTH=450
Length=450
Score = 113 bits (61), Expect = 2e-24
Identities = 75/82 (91%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 139 CAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAGCAATG 198
|||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 55 CAGAAAGAAGAGGCTATACGACCCGGAGTTAAGCTCTCGCTCTTTGTGGCTGAAGCAATG 114
Query 199 TTCATATTATCCGATGACCTAC 220
||| | ||||| ||| ||||||
Sbjct 115 TTCCTCTTATCTGATAACCTAC 136
> AT1G35400.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:13018289-13019198 FORWARD LENGTH=621
Length=621
Score = 113 bits (61), Expect = 2e-24
Identities = 75/82 (91%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 139 CAGAAAGATGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCTGAAGCAATG 198
|||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 76 CAGAAAGAAGAGGCTATACGACCCGGAGTTAAGCTCTCGCTCTTTGTGGCTGAAGCAATG 135
Query 199 TTCATATTATCCGATGACCTAC 220
||| | ||||| ||| ||||||
Sbjct 136 TTCCTCTTATCTGATAACCTAC 157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5