BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg913404

Length=438
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G02650.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   167    9e-41
  AT3G61260.1 | Symbols:  | Remorin family protein | chr3:2267523...   134    9e-31
  AT3G26612.1 | Symbols:  | other RNA | chr3:9781983-9783412 FORW...  97.1    1e-19


> AT3G02650.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr3:568047-570103 FORWARD LENGTH=2057
Length=2057

 Score =  167 bits (90),  Expect = 9e-41
 Identities = 108/117 (92%), Gaps = 0/117 (0%)
 Strand=Plus/Plus

Query  137  ATACACGTAGAATGGATGCTTATGGTTTGTGGGATTTGGTTAAGGAGATTGGTGAGAAGG  196
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct  699  ATACACGTAGAATGGATGCTTATGGTTTGTGGGATTTGGTTAAGGAGATAGGTGAGAAAG  758

Query  197  AGAATAGTAGTGTTTTGAACTTGGAGATATTGAAAGAATTGATTGCCTTGTGTGGGA  253
            ||| | || |||||||||| |||||||||||||| ||| |||||||||||| |||||
Sbjct  759  AGAGTTGTGGTGTTTTGAATTTGGAGATATTGAATGAACTGATTGCCTTGTTTGGGA  815


> AT3G61260.1 | Symbols:  | Remorin family protein | chr3:22675238-22676788 
REVERSE LENGTH=891
Length=891

 Score =  134 bits (72),  Expect = 9e-31
 Identities = 87/94 (93%), Gaps = 1/94 (1%)
 Strand=Plus/Plus

Query  346  GAGCGACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAAGTTGCAGCC  405
            |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct  532  GAGCAACTAGAGAAGAAGAAAGCAGAGTATGCAGAGAGGATGAAGAATAAGGTTGCAGCG  591

Query  406  ATTCACAAGGAAGCTGAACAGAGAAGA-CATTGA  438
            |||||||||||||| ||| |||||||| || |||
Sbjct  592  ATTCACAAGGAAGCAGAAGAGAGAAGAGCAATGA  625


> AT3G26612.1 | Symbols:  | other RNA | chr3:9781983-9783412 FORWARD 
LENGTH=919
Length=919

 Score = 97.1 bits (52),  Expect = 1e-19
 Identities = 58/61 (95%), Gaps = 0/61 (0%)
 Strand=Plus/Plus

Query  193  AAGGAGAATAGTAGTGTTTTGAACTTGGAGATATTGAAAGAATTGATTGCCTTGTGTGGG  252
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct  735  AAGGAGAATAGTAGTGTTTTGAACTTGGAGATATTGAATGATTTGATTGCCTTGTTTGGG  794

Query  253  A  253
            |
Sbjct  795  A  795



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20810848086


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5