BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg913415
Length=417
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35400.1 | Symbols: | Protein of unknown function (DUF1184)... 363 1e-99
AT1G35410.1 | Symbols: | Protein of unknown function (DUF1184)... 309 1e-83
AT1G35365.1 | Symbols: | Protein of unknown function (DUF1184)... 148 3e-35
> AT1G35400.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:13018289-13019198 FORWARD LENGTH=621
Length=621
Score = 363 bits (196), Expect = 1e-99
Identities = 227/242 (94%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 177 TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 293
Query 237 ATTTTCAGAGGCAAATGGGTTTGTGAGGGATGAGATCAAGTCTAACATTTTTCACTTGTG 296
||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 294 GTTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG 353
Query 297 GAAGTCTCTCTTTGAAACAACACCGGAAGTGAT-AAACCCTAATAAGCCTATACTATTTG 355
|||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||
Sbjct 354 GAAGTCTCTCTTTGAAGCAACACCGGAAGTGATGAAACC-TAATAAGCTTATACTATTTG 412
Query 356 AGCTGTTTAGGCCTGTCCGGGACGAAGATCTCCGTCGTCGTCTTGCTTCTTTACTCATAT 415
|| |||||| |||| ||| || |||||||||| |||||| ||||||||||||||||||||
Sbjct 413 AGATGTTTATGCCTATCCAGGTCGAAGATCTCTGTCGTCATCTTGCTTCTTTACTCATAT 472
Query 416 GA 417
||
Sbjct 473 GA 474
> AT1G35410.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:13024161-13024941 FORWARD LENGTH=450
Length=450
Score = 309 bits (167), Expect = 1e-83
Identities = 219/243 (90%), Gaps = 7/243 (3%)
Strand=Plus/Plus
Query 177 TTTTGAATACTACAACCAAGAGATGAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 236
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 213 TTTTGAATACTACAACCAAGAGCTTAAGAAGCTAGAAGAGAAGTTGAGGTCTGCCAAGGA 272
Query 237 ATTTTCAGAGGCAAATGGGTTTGTGAGGGATGAGATCAAGTCTAACATTTTTCACTTGTG 296
|||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||
Sbjct 273 ATTTTCAGAGGCAAATGGGTTTGTGAGGGAAGAGATAAAGTCTAACATTCTTCACTTGTG 332
Query 297 GAAGTCTCTCTTTGAAACAACACCGGAAGTGATAAACCCTAATAAGCCTATACTAT-TTG 355
|||||||||||||||| ||||||| ||||||| |||| |||||||| ||||| | | |||
Sbjct 333 GAAGTCTCTCTTTGAAGCAACACCAGAAGTGAGAAACTCTAATAAGACTATAGT-TCTTG 391
Query 356 AGCTGTTTAGGCCTGTCCGGGA-CGAAGATCTCCGTCGTCGTCTTGCTTCTTTACTCATA 414
|||||||||| ||| || | | ||||| | | | | |||||||||||||||||||||||
Sbjct 392 AGCTGTTTAGTCCTATC-GATAACGAAGTT-TGC-T-GTCGTCTTGCTTCTTTACTCATA 447
Query 415 TGA 417
|||
Sbjct 448 TGA 450
> AT1G35365.1 | Symbols: | Protein of unknown function (DUF1184)
| chr1:12991392-12992145 FORWARD LENGTH=540
Length=540
Score = 148 bits (80), Expect = 3e-35
Identities = 90/95 (95%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 82 GAGAAGCAGAAAGAAGAGGCTATACGACTCGGAGTTGAGCTCTCGCTCTTTGTGGCAGAA 141
|||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct 133 GAGAAGCAGAAAGAGGAGGCTATACGACTCGGAGTTGAGCTCTCACTCTTTATGGCTGAA 192
Query 142 GCAATGTTCCTATTATCTGATGACCTACGTTCTAT 176
||||||||| |||||||||||||||||||||||||
Sbjct 193 GCAATGTTCATATTATCTGATGACCTACGTTCTAT 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19755225357
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5